Array 1 60-1107 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRMF01000009.1 Pseudomonas aeruginosa isolate 213, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 60 28 100.0 32 ............................ TTCGGTTGCATCAGCCGCGTGCGCCGGTTCGA 120 28 100.0 32 ............................ TGAATGGGGATGCTAACAGCCAGTATCATACC 180 28 100.0 32 ............................ CTGAATGGTACGAATACACTGTTACCCTGAAT 240 28 100.0 32 ............................ ATCGAACCGCGGCGACCGTAGGCCATCGATCG 300 28 100.0 32 ............................ CTCGCCGGGGGGCAGGGATGCAGGGGGTAAAT 360 28 100.0 32 ............................ GTCTGTTCGTCTCCGAGCAAAGCGCAAACGTG 420 28 100.0 32 ............................ CGGTAGAGACGTCGGTGAGCGCTGCGATCTGC 480 28 96.4 32 ..C......................... TCGACGTTGCCGACCCGCGGCCGCGCCCGGTT 540 28 100.0 32 ............................ TCGGCCAAGGCTCCGGCATCGAGCACGATGCC 600 28 100.0 32 ............................ TTGATGATGCCGTCCTGCTGTTTGCCGGCGAT 660 28 100.0 32 ............................ ATTCCGGCAGAGGTTCGCGAAGCGGACATTGA 720 28 100.0 32 ............................ TGTGCCGGGCAGGCTGGCCAGCGCCTCATTGA 780 28 100.0 32 ............................ GTCGGCCTGGAGTTTCGTCGGGCGTACATCAG 840 28 96.4 32 .................T.......... CAAGCGGACGGTGACACGGACTATCAGACCGG 900 28 100.0 32 ............................ TCCGGCACGCTGTGCTGAGCCTGAGCTACAGG 960 28 100.0 32 ............................ ATCTCAGCGCCGCCTGTTCTGCCGGCCGCATC 1020 28 100.0 32 ............................ TACGGGCAGTCACGGCGAAAGGCACTCAGCGA 1080 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCTTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAATAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 60-868 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRMF01000028.1 Pseudomonas aeruginosa isolate 213, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 60 28 100.0 32 ............................ TTCCACGCGGGTGACTATGCGCTTACTGGCCA 120 28 100.0 32 ............................ GCCTGATCGACGCCAACGACCTGCCCGAGTAT 180 28 100.0 32 ............................ TTTCCCTGACGAGGCCGACCGATTCGGCTGGC 240 28 100.0 32 ............................ GCCCCAGATCAGCGTTGCGCCGCACGCGATGA 300 28 100.0 33 ............................ TTCGACACTGCTAGAGCAATGTCCGGGCATCCC 361 28 100.0 32 ............................ ACTCAGAAACCGGAGCGAAACCCATTGGACTC 421 28 100.0 32 ............................ TGTATATGCCCGTGATAGTAGCGGGTCCAAAG 481 28 100.0 32 ............................ CTGATCCGGGCGACGGTGGAGACGGTGGGGAT 541 28 100.0 32 ............................ TGGCACTCTGATCAGCGCGCAGCTCGAACTGG 601 28 100.0 32 ............................ GTATCCGCCCGGCCAATTCCGCATCAACGGTA 661 28 100.0 32 ............................ GCGACTGGGACGTTGTGCTGCTGCAACTGACC 721 28 96.4 32 ..................C......... AGAAAAAGCCCAGCCTTCGAGCTGGGCTTTTT 781 28 100.0 32 ............................ TCGAAGGGGGGAAAAATCCGCGAATGAGAGGG 841 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.7 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCCGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10322-9394 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRMF01000028.1 Pseudomonas aeruginosa isolate 213, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10321 28 100.0 32 ............................ TACTGGAGGTGTCGGAGTTCGAGCCGAGCCAG 10261 28 100.0 32 ............................ TGATCGGAGCCCTCATTGCACACGCTCCAGCC 10201 28 100.0 33 ............................ AACCAGGGCGGATAAAATCTGCCCTTCTGGATT 10140 28 100.0 32 ............................ GGTAGACGCTGCCAGGTTAGCGGCCCGGCAGT 10080 28 100.0 32 ............................ AGCTCGGCCAGCGCAGCCCGGCGCGCTTCGCC 10020 28 100.0 32 ............................ AGACGATCCGCGCATTGACGACGGGCGGGCCG 9960 28 100.0 32 ............................ AGCCGATGGCCCGCAGTAGTACCCCGATTAGT 9900 28 100.0 32 ............................ GTACCGGGGTGCTGCCAACCATACGAGGCGTT 9840 28 100.0 32 ............................ ATGACCTGGGCCCGGACCACCTCCAGCCCCTC 9780 28 100.0 32 ............................ CACATGTGCGCTTCGGCGATGGTGTCGGCCAG 9720 28 100.0 32 ............................ AGCCGATGGCCCGCAGTAGTACCCCGATCAGT 9660 28 100.0 32 ............................ TGATCCATCACCGCCTTGACACCAACAAAGGC 9600 28 100.0 33 ............................ AGGGATCGCCGTCGAACGGCGACTTGCCCGGAA 9539 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 9480 27 92.9 32 .....................A..-... TGTCGCGAAGTTCATAAGCGGGCTTCGGGCGA 9421 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 16 28 98.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCACCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //