Array 1 5339-7460 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNVH010000011.1 Lactobacillus delbrueckii subsp. lactis strain FAM 19699 FAM19699-i1-1_scf11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 5339 35 75.0 39 .C.T.....C...G.G.-...G...T.T........ GCATAGTGCGGATTGTAAGTAGCGACAAGCTTTGTTGCA C [5352] 5414 35 80.6 35 C..-.T.C......T...................AT GTGCAAAGCAGAATGAGTCTCCGTAAGGAATAAAA C,G [5443,5446] 5486 36 94.4 36 ....C..C............................ GAAAATAAAAAAAGTTGCAAGCGAAAGCTTGCTAGA 5558 36 100.0 36 .................................... AGAAAGAGGTAATAAAAATGATTTCCGAAAAAACTA 5630 36 100.0 43 .................................... AATACGACAACACTTATAACTATTGCGGTTATCTTGATAACTA 5709 36 100.0 37 .................................... TATGATGAAGATTTTAGAAAAGAGATGGAAAATTTCA 5782 36 100.0 37 .................................... CCGAACAAACTAGAAAAGCTATGTCAATAGATATCAT 5855 36 100.0 39 .................................... CAGTACTACTGGACGGTGGAAGACGGCCAGGTAGTTGAA 5930 36 100.0 37 .................................... TCTTCTCTGTGATTGGCTTTATTGCCGGCCGCTTTCC 6003 36 100.0 41 .................................... GGAGCTTCTGGCCGAAGACGAATTTTGGGATGAGTACTCCA 6080 36 100.0 42 .................................... GAGATCAAGAAGTTTATCACCATGAAAGAGTTCACTTACAGA 6158 36 100.0 37 .................................... CTAAGTTAAACAAAACATGGAGACGAAGAAAAGGAGA 6231 36 100.0 40 .................................... ACTGAAAAAGTTGTCGGATCTGTACAAGATCCCGACTGAC 6307 36 100.0 35 .................................... CTAACTACATGAAAAAACAATTAAAGGAGGCCACC 6378 36 100.0 38 .................................... TAGCTCGCAAACTGAAGTTTTAAAAGAAAATAAAGGAG 6452 36 100.0 43 .................................... ACGGCTACCCTGTAGCTTTTAATGGCGTTTCAATTACGGCAAA 6531 36 100.0 36 .................................... TTGAATTTCCAAAATCAGCTATTAAGAACGGCCCGG 6603 36 100.0 39 .................................... CGCCGGCCGGGTCCGTGAACCCGTCCCAAATAAAGCTGC 6678 36 100.0 35 .................................... CATGATGAAAGAGGATAACAATAAAAAGAGCTTGG 6749 36 100.0 38 .................................... CATTTAAAGATTAAGGTTGTAACGACATAAAACTTATG 6823 36 100.0 42 .................................... TTAAAAAAGGAGCTGGTCATATGCTAAAAGAAGAAATTGACA 6901 36 100.0 39 .................................... ACCGTTAAGTCTGAAAGATATTTGTCATTTGAAATTCTT 6976 36 100.0 37 .................................... TGTAACTATTAGGGAGTGTTTGTTTGACACTGATTCA 7049 36 100.0 40 .................................... TACCCATGCCCATTGTCACGTTGTTTTAAAACTCTCCCTT 7125 36 100.0 45 .................................... TTTGGAAAAAGTGCTATATTTAGGAGGTAAAAAATGGATTTAAAA 7206 36 100.0 39 .................................... GCAAAAAGAAAATTTTATTGCTCACATGGAGGACGTTGT 7281 36 100.0 37 .................................... CCAAAAAAATAGATCAATAGTTAATAGTTTAGTGAGG 7354 36 100.0 35 .................................... TTTGACAAAATTATTAAGGATGCAACTGAAAGCCG 7425 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================= ================== 29 36 98.3 38 GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Left flank : TGGCAAAAATCCGCACGCTGAAGCGTTTGATCGCCCGGCAGACTTGAACTAGATAAAGTAGCGATAATTGGATTAAACGGTTGGCCAGGATCTTATGGTTCAGCAAGTCATACAAGCCTTGGACCAGCTGCCCTTGAAAGTATGGTCCAGCGCAGCGACCATGCCGATATTGTAGATCAAGCCTGAAATAGTAACGACCACAAGAATTGGCGCTTCTTACCAGAAGTAGCTGCTCATTTTCTTGGGGTCGCGGGTATTTTCTGCTTCATCTCGCTGCCTCCTCTGACTGCAATTTTGCCCGCTTCTCTGCATCCGCTATCAGCATTTCCACCTTCATCATAGCACCGATTCTTCTTCAGTCTAGTCCATTTTGGACGGAATGAAGGAGGTTTTTTATACGAAAAAACGGCCAGCAACTGGCCGTTTGGCTTATGTCTCCTTTTAACGGAGATTGTGCATTGAAAATAGATTGATTAATAATATAGCTCTTTTCTTTAAAT # Right flank : CAGATCCTGTTTAAAACGTTATTACGTCGCGCATCCCCAAGCATTTGTCTCGTCTAAATCCTGGTCAACGCCCATCAAACAGCATCCCTCTTTGTCCTATTTTTGGACAAAAAAGGCACCTCTGCTAATTGAGAACATATAAATTATACCACACCAGATGCTACACCACGATCACCTTAGGTACTGACACTGCCTTCATTGGTGCGTCTGGACCCAAAATGTTAATCTGCTTGTTATTCACCTCATCTGGCAACAGATATAGAGTTATCATTCCATCATCTGGAACTTCTTTTTTCAAAATCCCAATCAAATGGTCTTTCGTAGTATCTGACTCCACCTCCCGTTCATACAGGCTGTACTGCTTCATGTCAAATCCCAACTCAACCAGCCGTTTCCTGTATTCCGCGGCTTTCTTTCGCTCTTCTTTGGTATTTCTAGGCAGATCAAAGCTTAAAAGAAGTACCATCATTTTCCTCCTTGAATGAAAGTCGGCAACTTCA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 19721-22463 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNVH010000005.1 Lactobacillus delbrueckii subsp. lactis strain FAM 19699 FAM19699-i1-1_scf5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 19721 33 100.0 33 ................................. TCGCCATGTAAAGCGTGATTAGCACCAAGATCA 19787 33 100.0 34 ................................. AACCAATCTGGCGAAGTCACTAGTGCAGTGGTAT 19854 33 100.0 34 ................................. AGTTTTGACACGTCGTCTTGTGCCTTTTCGCCCA 19921 33 100.0 34 ................................. ACCAGATTGGTTGAAAACTCGGTTGATGCTTGAA 19988 33 100.0 35 ................................. GTCGCCCACTTGGGTCACTTGGACAAGCACCATGT 20056 33 100.0 35 ................................. GTTGAAGCAAACAATATCAATGCACAAAAGACCAG 20124 33 100.0 35 ................................. AAGCGATCTTGTCCGGTTGGTCAAAGGCAAGACAG 20192 33 100.0 35 ................................. ATCTAACCCAAAAGAAGGAGCGTCAGAAGAGATAA 20260 33 100.0 36 ................................. GACCAGGCTGTCCCAACATTTATCCGGCAAAAACGT 20329 33 100.0 37 ................................. TAGTTAATAGATGGCATCAGCGTGATGATCGCTTGCC 20399 33 100.0 37 ................................. ACAGTATCAAGGTCGTGGTTGGACACACACGTTTGCA 20469 33 100.0 36 ................................. TTATTGACAGTCAAGCAAAAGGTAAGAACGTTGCAA 20538 33 100.0 35 ................................. TCAAACAGGTATTAGGTGATAAGCCAGCAGATAAG 20606 33 100.0 34 ................................. AACGGAAGCAACCCGATACTGCCAGTAACGTCTT 20673 33 100.0 36 ................................. ATGACGGGCATCGGCTTAATTTCATGGGCTTTTGAT 20742 33 100.0 37 ................................. CAAGTTTGGGTTGCCGAACCAATTTAGCGTGTACGGA 20812 33 100.0 33 ................................. TGCAATGTAGGATTAAGCACTTGATCGCACAAG 20878 33 100.0 37 ................................. TCAAGGCCTTTGAGCCAGTCTCCCCAGTCAAAGCCGC 20948 33 100.0 35 ................................. TTATTGTGCGTGTACAAAGCCGCAAAGCCAGCGGC 21016 33 100.0 34 ................................. CAGATAGCCCGGCCTTGTCGAACGTCTCAGCCTG 21083 33 100.0 36 ................................. AGCGCATCGGTCATAGCTGATGCCAGGTCAGTCAAG 21152 33 100.0 35 ................................. AACGCTCCTACGGCGTAATCGGCGACCCGGAAAAG 21220 33 100.0 34 ................................. GGTGATAACCTCTGCGGCGTATTCCCGCTTTTGG 21287 33 100.0 35 ................................. TTCTGGCCACCTTGGCCAGCATGGATAACGGCGGT 21355 33 100.0 33 ................................. CCTGCAACTAAATCCTGTGTAAAAGCCGTGCTG 21421 33 100.0 33 ................................. CCTGCAACTAAATCCTGTGTAAAAGCCGTGCTG 21487 33 100.0 37 ................................. TGGCGACTATGATATGCACGACTACCGGATGCTCTAC 21557 33 100.0 35 ................................. AACTTGATGGCAAGACTTATCCGGTCTACGCTAAC 21625 33 100.0 34 ................................. TCAATCCATGCACTGAGAGTAACCGTTTGCCCAT 21692 33 100.0 33 ................................. ACTGACTGGTGAAGACGTCAACCGCTTGCGTAG 21758 33 100.0 35 ................................. TTCTCCCAATCGCGAAAGTTTGGCTATGACATCAT 21826 33 100.0 34 ................................. GCGATCGGTGGCACTCTAGTGGCGGCTGCTTTGG 21893 33 100.0 35 ................................. CCGCATAACTGGCAGACAGGTTATTTTATTGACAC 21961 33 100.0 35 ................................. AGTCGATCACTGAAGGCGACGTATCCGTATCCTTT 22029 33 100.0 34 ................................. AACTCCATTGCTGGCGGAGCTATGGTCGGCAACT 22096 33 100.0 35 ................................. ACAGGCATGGCTACGCAGTTCAAGACCATGGGTGA 22164 33 100.0 34 ................................. TTGCCCTTGATCGTCATGACCTTGGCCGTCTTCC 22231 33 100.0 34 ................................. ACTGCCGACCGCTGCCACGTAAACTGCGTCTTGA 22298 33 93.9 33 ..............................G.G GCTGAAGGGAAAGTAGCAGCAGAAAGAAGAAGC 22364 33 100.0 34 ................................. ATTTGCTGGTACAAAAGTAACAGAGTTACAACAA 22431 33 84.8 0 ..........A...AA....T......C..... | ========== ====== ====== ====== ================================= ===================================== ================== 41 33 99.5 35 GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Left flank : CGGATACCCTCCGTTTTTATGGAAGTAAGTGATTGTAGATGATGATGGTAATTGTCAGTTATGACGTGAATACTGAAACTGCTTCGGGAAAGAAGAGACTAAGAAATGTTTCCAAAATATGTAACGACTATGGCCAAAGAGTTCAAAATTCAGTATTTGAGTGTCTTGTAGATTCTACAAAGCTTGAGGAAATGAAGGAACGCTTACTAAAGGTATATGATGAAGAGTGCGACAGCTTGTACTTCTTCAATGTAGGCAAAAAATATGAGAACAAAGTTCAGTCTTATGGGTGTAAACAAGTATTAGACTTGGGAAAGCCAGTTGTCTTCTAATTATCTAGACAGTGCGAGTGTGAAGCTAACAGAATTAGGCAGAGGATTCGCACTGTTTTTGACTATTTTTTTGTAGTCTTGAATATAAAATTGCAGTTTTTTAATGCTTTTTATATTTTGTATGCCCAATATTTAGCTGTGAAAATGCTTTTTTTACTAAATGTTGCG # Right flank : TATCGCTTAGATATGTGGATGCTTGATGGTCAAATTCCACTAAAAGCACTCCCTAGCGGGGTGCTTTTTAATATTTCGCTAAATCAAACGCTTCACCAAGCAAGCAGGAAAAGATTATAGTAAAATATACTGGTTATAAAAAAGCTGAGCCAAGCTCAGCATCCCCAAAACAAAACTTAGTTGAGGAGAACAAACACATGCAAGATATTTATATTGTTGCGGCCAAGCGAACTCCATTTGGCCGTTACCACAAGCAATTGGCTGACTTTTCCGCCATCGACCTGGGCCAAATCGCCCTGCACGGCGCATTAAAAGAAGCCGGCCTTGACGCCGAAGCCCTGGATGCCCTCTTCATGGGCAATGTCCTGTCTGCCGGCTTAGGCCAAAACATGGCCCGGCAAGTTGCCCTAAATGCCGGGATGCGGCAGGACTCAGTCGCCGTGTCCATCAACGAAGTCTGCGGCTCCAGCCTCAAGGCTGCCCGCCTGGCTGAAGCTCAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.40,-9.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //