Array 1 1052-2833 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYYA01000019.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CVM N38929 N38929_contig_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1052 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 1113 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 1174 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 1235 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 1296 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 1358 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 1419 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 1480 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 1541 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 1602 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 1663 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 1724 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1785 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1846 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 1907 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 1968 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 2029 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 2090 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 2152 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 2255 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 2316 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 2377 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 2438 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 2499 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 2560 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 2621 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 2682 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 2743 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 2804 29 96.6 0 A............................ | A [2830] ========== ====== ====== ====== ============================= ========================================================================== ================== 29 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16591-15098 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYYA01000036.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CVM N38929 N38929_contig_36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16590 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 16529 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 16468 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 16407 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 16346 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 16285 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 16224 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 16163 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 16102 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 16041 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 15980 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 15919 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 15858 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 15797 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 15736 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 15675 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 15613 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 15552 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 15491 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 15430 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 15369 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 15308 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 15247 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 15186 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 15125 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //