Array 1 42134-51036 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSXG01000001.1 Rathayibacter toxicus strain FH142 FH142_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 42134 29 100.0 32 ............................. GTTCCCTCCTGGCCCTCCGGCTAGGCCGTGGT 42195 29 96.6 33 ............................T GAAATTCGTGGTCGTAGAAAAGTCAAGTCCTCA 42257 29 96.6 35 ............................A ATGTACGAGTCGTCCGCCAAGGTTAAACCATGGGA 42321 29 96.6 32 ............................T GTCCCGCGCGGACTGGCGTGGAGCGAAATGGA 42382 29 96.6 33 ............................T GATTTCGTGTTTGGGTGTGTAGAAGTCGGTTGG 42444 29 96.6 33 ............................T GTCTGAGCTAGATAGCCATGAGTAGTGGCATGC 42506 29 96.6 32 ............................T CGGTAGCCAGACCTCGACGCTGTGGCTGGACA 42567 29 96.6 33 ............................A TTGTCAAGACGATTATTCGACTTGTCGTCATCA 42629 29 100.0 32 ............................. AATCGTTGAACACGCCGAACAACTCATTGAAG 42690 29 100.0 32 ............................. CCGCCCATTATCGCCACGAATGGCATCTAAAG 42751 29 100.0 32 ............................. ACTGGATGGCCTTGTTAAGGGCGGCATTTTAG 42812 29 96.6 33 ............................G ATAGTGTTATCTTTCGGTTCAACAATAGCAAAA 42874 29 96.6 32 ............................T GCTGCACGGCGCGGACAATCTGATCCTTTTGA 42935 29 100.0 32 ............................. TATTCTTCATACGTCGCACGAGATGAAGACTT 42996 29 96.6 32 ............................T CTGTGACGTCAGTTTTCTGGGGTTGGGGTCGA 43057 29 96.6 32 ............................A TCTGGTGAGAATCGCTACTGTAGACAGTGCGC 43118 29 96.6 32 ............................T GGCAGCCCTATCGAGCTTTCTGAGGACCTCGA 43179 29 96.6 32 ............................T CAACTTTTTGGAGGCGTATCATCCGTGGGATA 43240 29 100.0 32 ............................. AGCTAAAGTGAAATAACCGTTATCAGCGTTAC 43301 29 96.6 32 ............................G TCATCCAGCTGTGTATCTGTCCACTGCCGCCA 43362 29 100.0 33 ............................. TTAAAAGGGTTTTGCTTCCTTTTATTGATTTTG 43424 29 96.6 32 ............................A TCGGTATCGGCGCTTTCGTGAGCCTGCAAGGC 43485 29 96.6 33 ............................T TCTTCAGCGAAGAGAGGTTCACCTTCGCATGAG 43547 29 96.6 32 ............................A AGTATGCTCCTCCGTCAAATCGGCCTCAGCGC 43608 29 100.0 32 ............................. CTCGACGGTCTTGCCGACGGCATTACGAGTAT 43669 29 100.0 32 ............................. ACAATAGCCACACTCACCGGCTCGGCCAATGC 43730 29 100.0 32 ............................. AAAACCGAGTGCATCAACGGTCACCCGTTCGA 43791 29 96.6 32 ............................T TAGCCCTTCTTTCTAAGATACGGAGTGTCGAC 43852 29 96.6 32 ............................G GCGGCTTTCGGAACCGAGATCGATTTCAGTGA 43913 29 96.6 32 ............................T GTTAAACGTGATCCAGGCCCCGCAGATGATAA 43974 29 96.6 32 ............................T GCGAGTCGAGGCACCGGCTCACCTGTCGACCC 44035 29 96.6 33 ............................G GATTCGACGGCTTCATCCGACAGAACGTCAGGA 44097 29 96.6 32 ............................A ATTTAATCCCGCGGGCGCGGATACTTTTACTA 44158 29 100.0 32 ............................. AAGAACGTCATCCCCGGCTTTAGCGTCAACCG 44219 29 96.6 32 ............................T TCGCCTCGGCTGGCCATGTATGAGGTGAGTAG 44280 29 100.0 32 ............................. GATCGGCCCCGCTTTTTTAGGCCAACCTTTTT 44341 29 96.6 32 ............................T ACCCGCCCCGAGGAAGAGGTTAAGCGGTCTGA 44402 29 96.6 33 ............................G TCGACAATGTCGGCGTTGGTGGTCATGGTGGTC 44464 29 100.0 32 ............................. CCCTTCCCGTCACGCTGCACCCTCGTGTTTTC 44525 29 100.0 32 ............................. TCTGCGGTAGTCATCTCACCAAACGTATCCAA 44586 29 96.6 32 ............................T TGCACATCGCCCGTCGCGCCGAGGTTACCGGA 44647 29 96.6 32 ............................T ACTGATGTGGTCGCGATTGAGCTGAAGATCGA 44708 29 100.0 33 ............................. GAAGCACAACTCCGCCAGCAAGACACTTATGTT 44770 29 100.0 32 ............................. TTTTCCGGCAATCTCCGCGATATTGGTCTGGA 44831 29 100.0 32 ............................. GACAAGGCGGTCCACCGGAATAACTTGTTTAG 44892 29 96.6 32 ............................T TCCAGCGCCTTCTGAAGCTTTTTGCTGGCGAG 44953 29 96.6 32 ............................G ACGGGATGTAGTAGTAGTCCCGTCCCCCTACC 45014 29 96.6 32 ............................G CCCATCTAGAATGGGATATAAAGGGTCTCGTT 45075 29 96.6 33 ............................G AGGATGGTGGCCCGCAGGATGCTCGCGATTCTG 45137 29 96.6 32 ............................G GAATACCGACATAACCTGCGCATAAGAAGATG 45198 29 96.6 33 ............................T CCGTCAGGCGAAGCGTCGCCCGCTGTCGTCTTA 45260 29 96.6 32 ............................T AGCCGCGAGAACCTCGGCCGGTGCGCCCGCAC 45321 29 96.6 32 ............................T ACGCAGCACCCTATCCTTCAAAATCACCATTT 45382 29 100.0 32 ............................. AATACACCCGAATACAAAACAGTTAAACCGGC 45443 29 96.6 32 ............................T AGCCGTGCGTATTGGCCGGGGGTGGTTCGCCG 45504 29 96.6 32 ............................T AAATATCGAGACCCGCGAACTTATCCTTCGAC 45565 29 96.6 32 ............................G AGTGTCGGCCACTTCGCCGGGGAATTTTGGGA 45626 29 96.6 32 ............................T TCACGCGGAGAATAATCTGACTAACACTTTCG 45687 29 96.6 32 ............................T AGCGTCACCAGAATCGCGACCATCCTGCGGGC 45748 29 96.6 33 ............................A CCAGGGCCTAGCCGGAGGGCCAGGAGGAAACGG 45810 29 96.6 32 ............................T ATTTTGGGAAAAACTTTCAAAACTTTTGTAAA 45871 29 96.6 32 ............................G CCCCCTTGGCCATCCCTTTTAATCAGCTTGCG 45932 29 100.0 33 ............................. TTTAGCGGCAATCTGCGCGATATTGGTCTGGAA 45994 29 100.0 33 ............................. GTTACGCTCATCAGCCATACCACCGAGCTCAGC 46056 29 100.0 32 ............................. TTAAAGGTGCCGTTACGCCCAATAAGGACGTG 46117 29 100.0 32 ............................. ATACGCCTAAAAGACAGAACCCGACCGAAATT 46178 29 96.6 32 ............................T TGTATTAGCCTCATCATAAGGATGACCCATTT 46239 29 100.0 33 ............................. AATCGGCCCCCGTGGATACTGGGGCTTATCGTG 46301 29 96.6 32 ............................G GCGACAGGGGCGCGCGCGACATCCCCGAATTT 46362 29 100.0 32 ............................. TTAAATCGGTTCTTGTTGACATGAGTTCTCAA 46423 29 96.6 32 ............................G CTCGTGGATGTGGTGTATGATATCGATTTTTT 46484 29 96.6 32 ............................T AGGGGTAGCGACAAAGGTTATTCAGTCGCTCG 46545 29 100.0 32 ............................. GATTGTTCGACGGAACATCATCCCAGTGGCAA 46606 29 96.6 32 ............................T GCGGGCGACTGATGAAATAGTCATGCAAAGAA 46667 29 96.6 32 ............................G GAACACAACGCGGGGAGGCATCCTAAAGGTAG 46728 29 100.0 32 ............................. AGTCTCGTCACAACCCGCCGCAATCACCGACG 46789 29 100.0 32 ............................. GCTGCGGTCGTTGCGGCGCGGCATTATCCCGA 46850 29 100.0 32 ............................. GGATTTTTCGCGGTACGTGTACAGTCGTCGGT 46911 29 100.0 32 ............................. ATCAGCCAACTATCAGAAACCCCCCCAAACGG 46972 29 96.6 32 ............................G TAGTGCCGCGAGAAGCGGTGACCCGGGCGGGA 47033 29 96.6 33 ............................G TAAAGCCCGAACAAGACTCGGGATCACCCCGAA 47095 29 100.0 32 ............................. CCGCTGACGACGGGTAGCTGGCCTTCTATCCT 47156 29 96.6 32 ............................T GCCGCGCCGCAACGACCGCGGCGTTAGGTTCT 47217 29 96.6 32 ............................T ACCTGCTCAAGATAGCAGACCAGGTGGCCGCA 47278 29 96.6 32 ............................T ATTGTAGATGTTCTTACAAAAATCCTGAAAAA 47339 29 96.6 32 ............................A TTCGTGGGTTCGCGCCCGTTTCGGGCTGCCCG 47400 29 96.6 32 ............................G TCTTCGATAAGATCTTCCGCATACTCGACGAT 47461 29 100.0 32 ............................. TCCACGGCCACTAAAACCTTCGATTTTTCTAC 47522 29 100.0 32 ............................. CGCAAGCGCTTCCACCATCAGATCGGCTACCT 47583 29 96.6 32 ............................G TGCGCTTAGCGTGGATTTGCGGGAAGCATTCC 47644 29 96.6 32 ............................T TTTGGCGAGAAGGCTCCAGACGATTTGGCCGG 47705 29 96.6 32 ............................T TTGGTCCGCTATTCTCCTCACTGATGTGACAC 47766 29 100.0 32 ............................. ACTAGGTGAAGTACCGATTCGAGACACCAGCA 47827 29 100.0 33 ............................. AAGGTGAGGGCTCGATTTTTCTACGACAACGAA 47889 29 100.0 33 ............................. GACCGAGTATCCCATTAGAGACCAGTGCCAGTG 47951 29 100.0 32 ............................. ATCGACAGGTGCCTTTATGGAACCTTCCCCTA 48012 29 96.6 33 ............................A CGCTTTAGTGGTGGTGGATCCTAAGAACGCATC 48074 29 100.0 32 ............................. CTCGCGACTGCCCGCTATTATCAGTGCGGCCG 48135 29 100.0 32 ............................. CTGCGGATCTTCCCTGCGTGCCCTGTCAAAAA 48196 29 96.6 32 ............................T TCGCCGGGTGGTGAAGTCTTTGAAGGCATTAG 48257 29 100.0 32 ............................. GGTTAGCCAGATTATTCTCCGAGTGAATTCGC 48318 29 100.0 32 ............................. ACGCACTTCGTGTGCACCGCATAGTGGCCTGG 48379 29 96.6 32 ..G.......................... CCTTAATATAGGCCCCGTCGGTCGGTCGGTGC 48440 29 96.6 32 ............................T AGTTGGCTTACGTAAAATGGTAGAACAGAGAC 48501 29 100.0 32 ............................. TCTAGGGGCAATCAGCTTCCCGGGCGTATTTT 48562 29 96.6 32 ............................T CGGTTCTTGTTGAGATGTCTTCTCAACAGTGG 48623 29 96.6 32 ............................T GCCGGGCTTGTTGAGCATAGGGACCAGAAAGA 48684 29 100.0 32 ............................. AAAACCTCGGCGCGCCAGGAAACGGCATCTCC 48745 29 96.6 32 ............................A CCGCTTCGCAGTACAAGACAAATTCACAGACT 48806 29 100.0 32 ............................. GAATCTAACGTTACCAGGATCTCAAAGACCGC 48867 29 100.0 32 ............................. AGTTCGGGGTCTATCTCAGGCTTTGCGCACTC 48928 29 96.6 32 ............................G CAAAACACCAATTTTAGGCGTCACATATGTCT 48989 29 100.0 32 ............................. GGCTTGATGTCCTTTTCTTCCTGAAGGATTTT 49050 29 96.6 32 C............................ CCTGCGGCCCGGCCGGTTCCCATCCTTTATAG 49111 29 96.6 32 ............................T CCTTTCGAACCTCGCTCGTGAGGCGAAGAATA 49172 29 96.6 32 ............................G TTAAAGCTTTTTGCACAATGTCATCCCGGCGA 49233 29 96.6 32 ............................T AGGGAGCCTAGCGTATTGTGTAGTACCATAAA 49294 29 96.6 33 ............................A AAGGGCGACCGGATTATGGTTTTAGATAGCAAC 49356 29 96.6 32 ............................T CCTGCCGCGGGGGTTGCGCCGACTACAGTGCA 49417 29 96.6 32 ............................G TCCAATCCGCGTCCCCAGCTTTATCCCTATAG 49478 29 96.6 33 ............................T CGGAGATGAAAGCGTGCGTCTCTCGGATGGCTG 49540 29 96.6 32 ............................G TTCACCGAGTGGTTCGGGATAATGCCTCGCCG 49601 29 96.6 32 ............................T CTTTCGTGGAGGTTGCCGACGCTTCCGTTGAG 49662 29 96.6 32 ............................T TGTCACACATTCCGGGGGCGCGGTTCCAGATT 49723 29 96.6 32 ............................G TAATCTGGCCGCCGCCTACGGAAGCGCTCCAG 49784 29 100.0 33 ............................. ATTTTCCGCGCCACCAAATGGGTTACGTATTTA 49846 29 96.6 32 ............................G CCTTAGCTTTTGCCAGGGCTGCGTATGCGTCC 49907 29 96.6 33 ............................G GGGCATGCCACTATTCTTGACTATCCAGCTCAG 49969 29 96.6 32 ............................T CGTTTCCCGGCCCCCGTATATAAAGATATTTT 50030 29 100.0 33 ............................. GTGAGCATAACTGAAGCGCAGGCGTTCTCGTCG 50092 29 100.0 32 ............................. ATTGGCTGCGACAACAATCGAGTCAATCTCAG 50153 29 96.6 32 T............................ AACAAACGCGGCAGTAGCGACAGCAGACAAAC 50214 29 96.6 32 ............................T AGCCGTCAGGGCTCTTAGCGACACCCAACAAA 50275 29 96.6 32 ............................T ATTTCGGCGTTTCTTCAAACACTTATGGCACT 50336 29 96.6 32 ............................T ATCTCATACGACCTCACAATACTCGTATGGGA 50397 29 100.0 32 ............................. AATCTTGTCAACATCATACGAGGCCGCAAAGG 50458 29 100.0 32 ............................. CTTCCCACTAACCTCACCCGCGATAGTGCCGG 50519 29 96.6 32 ............................G GTGATCCATCACTATCAGAAGACAGCTGTGCG 50580 29 100.0 32 ............................. TAAGTTCGGGGTGGGAGCCTATAAGAACTTCC 50641 29 100.0 33 ............................. TGGTAATCTGGCGCGGGCTATAGGGAGGTCCGC 50703 29 96.6 32 .C........................... GCTCGACCGCGCTTCTTTAGACCCACCTTTTT 50764 29 96.6 32 .............G............... ATCGAGAGCCGCGAACGCGTCCTTCGACAAAA 50825 29 100.0 32 ............................. TACGTCGCTAACCGGCGACAACTTCCTTACGG 50886 29 96.6 32 ............................T CTTGCCGAAGAGTGGGTGTTGTCTAGCTTGGC 50947 29 93.1 32 .............G..............G CTCCGCAAGCAGGTCGCCGCCGACGACAAGGA 51008 29 72.4 0 ..CG.....A...G.........CAC..T | ========== ====== ====== ====== ============================= =================================== ================== 146 29 97.6 32 GTATTCCCCGCGCAAGCGGGGATGGTCCC # Left flank : GGGACGGTGCGGAGCGGACCGTGGCTTCGGGACGAAGCTATGGGGAAATCGACGACGAGGAGCCCCCGGAGGACCTCCTATGATTGTGCTTGTCCTCACCGCTTGCCCTTCTGGACTTCGGGGCCATCTTTCGCGGTGGCTTCTCGAGATTAGCCCTGGAGTATTCGTTGGTCACATCTCCGCACGGGTGCGCGACTTACTCTGGGAGCGGGTTCTGGAGCTGGCGAAGGACGGGCGCGCCATCCTCATTCACTCGACGAAGGGCGAGCAACGCCTGGCTTTTAAGGTTCACCGGCATGACTGGCAACCGACCGACTTCGACGGAGTGCAGCTCATGCTCCGGCCAGCGAAGCCCTCTGAGCAGCCCACCCCAGCCTTACGGAAAGGGTGGAGCAACGCCAGCCGGTACCGGGCCGCAGCACGCCAAAAACGCGATGGCTAAACGATCCAAACTACGTCAGAATGGGGGTCCGTCGACGAAAAATCCCTGGTCAGGAAGA # Right flank : TCAGTTCGGCCACTGCCGATAACATCGCACACCTCGGGCACCGAACTAGGGCGAGCGGCACCTCTCAAGCGATGTTGCCGGTCGTCGCGGGGGTGTCCACCGCGATCACCCTCGATATGAGCGCGATCGTGTCTTCACATACCTGCGCGACGGCCATCGACGGATCCGTTCGCCTGCGTCGCATATCACCCTCCTAACTTGGGAGGCAACGTCATTGGCGCACTCGTCGAAGCTGAAACCTTTGTGACACATGGCGCTGTTGGCGTCAGCGCTGCCGTAAACACGCTAATCGCCCGCGGATTCCACTCCTCAGACCGCCCTCATCGGCGCGGGCTCGGCGCGCCTTGTCATCGTGATCGTTCTCGGCGCGACAACTGTAAAAGCAATTGTTCCTCGCAGCCGGCGGAGGCATGATTTCCTTCACGAGCGTAGTTGTTGCGGCGCCCGTGGTGCTGCCAATTGTCCTTTGGTCAGTCATTGCAATTTTGCGAAGCAGCGTC # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCAAGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCAAGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //