Array 1 36-603 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAEE01001013.1 Chromobacterium haemolyticum strain C-61, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 36 28 100.0 32 ............................ AGCGGGCGATGCGGCGGCGTGCTTCTTCCAAC 96 28 100.0 32 ............................ GAGGAGCAGACCATGAACAACAGCATCAACGG 156 28 100.0 32 ............................ ACCGTGGAGCTGATGCCGTCGCGCAACAGCAG 216 28 100.0 32 ............................ AAGCGGCAGGCAGCACGCGGCATGTGGATACT 276 28 100.0 32 ............................ TTCCGCTGCGTTATCGCGGTACTCGTCGATTT 336 28 100.0 32 ............................ GCTTGCCCTCGGTGGTTGCCGCCAGCGTCTTG 396 28 100.0 32 ............................ ACCGGCGTGAACTACAAGCTGAACTCCCGCTT 456 28 100.0 32 ............................ TCGGCCGTGGTCAGCCAGTTCCAGGCGAACAC 516 28 100.0 32 ............................ ACAAATATAGCCCCTTCGCTACGGAGGAGCAG 576 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 100.0 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : AAAAATCAGGCGCCAGCCAACTGCGCGAAGAGAGCG # Right flank : GATGCCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [25.0-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9559-10354 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAEE01000777.1 Chromobacterium haemolyticum strain C-61, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 9559 28 96.4 32 .................T.......... TGCGGCACCGGGTGCCTGAGCTGGTGCGAGTG 9619 28 96.4 32 .................T.......... TGATGAATTAGGGCCATACTGATCATCTCGAC 9679 28 96.4 32 .................T.......... ACGGACGCAGCCTGCTGCGCATCATACTGGGG 9739 28 96.4 32 .................T.......... CAAGCAAGCGCTTCTTCCCACACCATCCTTAC 9799 28 96.4 32 .................T.......... GAAATGGACTGGGCCGAGAACTGCGAAGAGCT 9859 28 100.0 32 ............................ GCAGAAGAAAACTTCAGCGCTTCGGCGGCGGC 9919 28 100.0 32 ............................ AAGTTCGGCGCGATGCTGAACCGAATTATCGG 9979 28 100.0 32 ............................ AATTGTGACCGCCCAGGCGGCGCCGATGCCTG 10039 28 100.0 32 ............................ TCAACCAGTCCACGCTTACCACGCTAGCCGCC 10099 28 100.0 32 ............................ ATTGATATCGAAGCGCGGCGCCGCGACGGCCC 10159 28 96.4 32 ..............A............. GTACAGATAGCAGCCGTCAAAGTTCTTGTACC 10219 28 96.4 20 ..............A............. TGCCGCTGCGGCTGCTTCAG Deletion [10267] 10267 28 96.4 32 ..............A............. AGGCGGGCGGCTGATTGATCGGAGCGCCGGGA 10327 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 14 28 97.9 31 GTTCTCTGCCGGATGGGCAGCTTAGAAA # Left flank : ACGCCGCCTTGCAGCGGCTGATGGCCGGCGACTGGCTCAGCGGCATGCGCGACCACATCGCGCTGGCCGCCATCCAGCCGGTGCCGCCGCAGGCGGAGGCCTGGCAGGTGCGGCGCAAGCAGGCCAAAACCAATCCGGACAAGGAACGCCGCCGGCTGGTGCGGCGGCTGGGCATCAGCGCGGAAGAGGCCGCGCGGCGCTTCCCGGACAGCGCCGCCCGCCGGCTGGCTCTGCCCTTCCTCACCCTCAACAGCGCCAGCACCGGCCAGCGCTATCAGCTGCACATCGAACAGCGCCCGGCCCCGGCCACCCACGGCGGCCGCTTCAACGCCTTCGGCCTCAGCCCCGACGCCACCGTGCCGTGGTTCTAACCCTTTTTTTCACACCCCACCGTCAAGCCTGTTAAATCAAGGGCTTGGCGCGGGGTGTGAGAAAAGGGTTTTTATTGGGGAAAGCGATGCTTTCCCCCGCTGGCGCGGGTTTGCGGGGGAAAGGCTCTA # Right flank : ATCTCAAGAGGTGAGTGGGGCCTGCCGGCTCTAGTTCACTGCCGGACAGGTAGTTCTCCACAACAAAATCAATGCTATATTAGGCATCTAAATTGACATTGACTAGGGAGAAATTATGGACTTGGTACTTGCCGATGTGGCCGTCAGCGTCACCGAGCTCAAGCGCAATTTTGCCGGCATCATGCGCGAGGCCGCAGGGCATCCGGTGGTGATCCTGAATCACAACCGCCCAGAGGCCTATCTTGTCCCTGCCGCCCAGTACGAACGCATGATGAACCTACTTGAAGACATCGAGGACGCAAAGTTGGTGCTGGAACGTCGGCAGCAGCCCACCGTCAAGGTGGACCTGGATGAGCTATGAAATTGTTTTCCGGGTGGATGCGGAGAAGGAATGGCGAAAGTTGGACCCATCAATCCGACAGCAGTTTGCCAAGAAACTGAGAGAACGAGCCGAGCATCCGCACAACCCTGCCGCCAAGCTGCATGGCCTGGAAGACTGC # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.06, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCTGCCGGATGGGCAGCTTAGAAA # Alternate repeat : GTTCTCTGCCGGATGGGTAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCTGCCGGATGGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 146-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAEE01000169.1 Chromobacterium haemolyticum strain C-61, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 145 28 100.0 33 ............................ TCCGCGCGCCATGCATCCCCCCGTTTTCTATAT 84 28 100.0 32 ............................ GGTTGAGTTCGACACCGGCCACGACTCGATGC 24 24 82.1 0 A.......................---- | ========== ====== ====== ====== ============================ ================================= ================== 3 28 94.0 33 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : CTCCAGCTCATTGGCGCTGAACAAGGGCGTGCCGCCCCCGCCGCAAAAGCCCACCATCACCCCGGCCTTGGCCAGCTCCCGCATCGCCGCCTGCGTCACCGAAGTGCCGGTGCCCAGCAGGATGCAGCTGGTGTTGGCGATGGGGATATTCCAATACAACGAAGCCTTGCCGGCATCGGTGACGTACTCCACCCGCCCGCCGTTGACCAGCACCCGGCAGTGCTGCAGGTAATAAAGATTGGCGCGCTTGGAATGCAGAATGGTCTTGAGATCGGACGGGGAAAAATCGGACATGACGATACCTTCGGGATGGAACTCGATGGCATATTTTGCCATGGGCATGAACGGCATGGCAGCCTGCGCGACAAACCCTTTTTTTCCGCCCCCTGTGGCTGACATTTAAAAACAATGACTTAGCGATGGCATGGAAATTTGGGTCAAAGCCGGAAGAATCGCTGCAAATGCCCACGCCATAAGGACTGTGGGCGGTGTAGACTCTA # Right flank : A # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //