Array 1 799-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014003.1 Synechococcus sp. PCC 73109 plasmid unnamed5 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 798 37 94.6 35 ..............G................G..... TCTAAATCACTGGTTCCCCCCACTGCCTCGTACTG 726 37 94.6 34 ..............G................G..... CTTTCTAATTGAGGAAAAACAATGGCGCAAATGA 655 37 100.0 36 ..................................... CCAAGTCAACACACAAAACCAGGGAATATGGAGTTA 582 37 100.0 34 ..................................... AAGACAGATAGTTTCCCCCTGGTAATTGGCCGAT 511 37 100.0 35 ..................................... AGTCACAGAGCGGGTTTCTGCTTCACCACTTGCTT 439 37 100.0 33 ..................................... TTTTTCTCTTTGGCCGGGTGGCACTTTTCGTAA 369 37 100.0 38 ..................................... AATTGCCCCGCGTCAAAACTCAATCGCATCGCATTGTG 294 37 100.0 39 ..................................... CCACAGCAATAACTTCTGTGCTCGCGCCCCCCCCGCCGT 218 37 100.0 35 ..................................... AAACCGCACTCTTGTCCCCGGATGACTCGCCATAA 146 37 100.0 35 ..................................... CGTTGGGTCAATCAGAAGCCTGATAGAAAGCTTGG 74 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 11 37 99.0 36 GTTTCAGTCCCGTGATCGGGATTTAGTGGTTAGAAAG # Left flank : GACTCCTCAGTGGCGTCACCTCCCCAGACTGTGGCGAGTTCGGCGAGATTGACGGTTTTCGCCCGGAATAATGCTATCAGGAACATCGCAACGAAGGAGAGTCTGGCTCCATGCCATCCAATATGGGGTCGCAATTGGTCGCGAATTTCGCTAATCTGACTCATGAGGGTTTGCTTGGTTATCTTCTAATTCCTATCAAACCCTCTCCCTCTATCCTTTTCAAGTTTTTGTCCTGTACTGAGAACTAACCAAGGCAAAACAGAAAACAGTTTAACCTTTGTCCTCCAACTTCCCGATGCAGTAAACCATAGTCATCATCGACATCAATGTCCAAGTACCATCAAAGCCTACGTTAATTCGATGACGGAATTCAGCCTCAGACTCATTGGCGTTATATGCCTTAATGAGTTCCATGTAGTCACGGTAAACCCAGTAACTCCAAAAGATAGTAGAGGCCAGGAAGAATAAGGTAAAGAAACGAAACAAGTTTTAAGAAATAT # Right flank : GTTCTAGTTTTTCTCCCAGGCAATCTGTTTTCGCGCTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGTGATCGGGATTTAGTGGTTAGAAAG # Alternate repeat : GTTTCAGTCCCGTGGTCGGGATTTAGTGGTTGGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 2 162690-163676 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014003.1 Synechococcus sp. PCC 73109 plasmid unnamed5 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 162690 37 100.0 37 ..................................... GAAATTTATATGTCAGTCAAGGGGAAAAGCAAACCTT 162764 37 100.0 36 ..................................... CATAGCTGAGGTTTGGCTCTCGTTGCCCTGATTCAG 162837 37 100.0 37 ..................................... GCTCTAACTGATCCATTGATCCAAAAAAACGAAAAAT 162911 37 100.0 35 ..................................... CTGTGGTGCGCAACTAGCCTTAGATGATCGTTCGG 162983 37 100.0 33 ..................................... AGCAGCAACGATGCCTACATCCGTCCCACCCGT 163053 37 100.0 36 ..................................... TCAGCCCAACGGGGGCCGGGTGGGGGACAGCGATTA 163126 37 100.0 35 ..................................... GCATCAAGCATTAGGAGAACTGAATTATAATCCTG 163198 37 100.0 35 ..................................... ATAACGAAGGCGATGATCCTGACGAGGGTGGTCAA 163270 37 100.0 36 ..................................... TACTAATGCGCTTTTAACTAATCCTGCTTTGGCTGC 163343 37 100.0 38 ..................................... TGTTGCGGTCGGCCATGTTGACTTTATCGACCAAACCA 163418 37 100.0 35 ..................................... AATCCGAATAGAAGTAGGTTCTTCATTCTCTTCAG 163490 37 100.0 34 ..................................... CCATATAATTAACGCAAGAAGTCAGAAGCACTAA 163561 37 100.0 42 ..................................... ATGATTGCTTCGGCCATATCCGCGCCCCAACTTTGGACTAAG 163640 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 14 37 100.0 36 CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC # Left flank : CACTCTTTTTTACCTGATCATTTACGACTTACCTTCTACAAAGGCAGGGGATAAGCGCCGCAAGCGTTTGTTTGATTTATTATCGGGTTATGGCACTTGGAAGCAATTTAGTGTTTTTGAATGTTTTCTGACGACGAAGCAATTTGCAAAACTACAAACTGCGATAGAAAAACTGATCAAACCGGATGAAGATGCTGTTTGTATTTATATTCTCGATGCCACGGCTGTTAAAAAGGCGATCGCCTACGGTACATCTACGCCAGAAAAACCGGGTAGCATCATCCTTTAGATTTGACCTAAAATCAAATTGGCAAACCCATAGCGTGACCAAAAATCCTAGGGACTTTGCCAAAACCTCTAGAACCTTGAAAACTCAATACTTTTCAATACTTAAAGGTCAACAATTTATAGAGCGATCATGGGTAAAATTGGACTCATGGAGCGACATCTGCCAAATGAGCTTTGCAAAGCTAGGTATCGTAAGAGTCCTGGCTCGCGGA # Right flank : ATCGGCCAATTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA //