Array 1 51131-51464 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZTK01000001.1 Salmonella enterica subsp. enterica serovar Tennessee strain 50260 50260_c1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51131 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 51192 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 51253 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 51314 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 51375 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 51436 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : CCTGCCGTCGCCGTCGCCATATCCGGCGCTGTGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 224-1166 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZTK01000025.1 Salmonella enterica subsp. enterica serovar Tennessee strain 50260 50260_c25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 224 29 100.0 32 ............................. GGCCACTTATCAGCAAACCGGGCATCCAGAAC 285 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 346 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 407 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 468 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 529 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 590 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 651 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 712 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 773 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 834 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 895 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 956 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 1017 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 1078 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 1139 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGAAGCGGCGTTGTCAGCGTAAACTGGCCGGCCAGCAGAGCCTCCTGAAGCTGGCTAAACTGGATTTGCAACGGCACATTGAATATATCAAATGTCGGCGAACCAGACGGTAAGGCATGATCGATCGCCTGCTGGATATAGTTCATCACGTTGCTCGTTGGGCGGCGGATCAGCAGATCGCCAAATGTCGCATGTAAGTCGCCGTCGCCATATCCGGCGCTGTG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17790-21663 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZTK01000025.1 Salmonella enterica subsp. enterica serovar Tennessee strain 50260 50260_c25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17790 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 17851 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 17912 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 17973 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 18034 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 18095 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 18156 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 18217 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 18278 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 18339 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 18400 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 18461 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 18522 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 18583 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 18644 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 18705 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 18766 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 18827 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 18888 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 18949 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 19010 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 19071 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 19132 29 100.0 32 ............................. TTATCACCTGAATGAGTTATATAGCGTTTTCC 19193 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 19254 29 100.0 32 ............................. TTAAGAGGAGATTATTTGTGGCTAAAAATTAC 19315 29 100.0 32 ............................. CCCCCACCAACCCCGCACCGCGCTGGCTAAAA 19376 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 19437 29 100.0 32 ............................. AACTGGTGATGTGTGAGCCAAAATTACGTGAC 19498 29 100.0 32 ............................. AGGCGATCGACGCGGAACTGGTGCGCGGTGAA 19559 29 100.0 32 ............................. TGGATGTGTACGCCGCCTCGCCGGATGAGGCG 19620 29 100.0 32 ............................. ATCGGCATTTCTCCAATCATGCAGCATGCGCA 19681 29 100.0 32 ............................. TTGTTGATTTTGTCGAAGGTCTTGAGCAGTGG 19742 29 100.0 32 ............................. ACAGGTAGATCATTTATTAATCAGAATTAACA 19803 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 19864 29 100.0 32 ............................. GTCTGTCTTTATTCCGTGATAGCGCCACTCAA 19925 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 19986 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 20047 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 20108 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 20169 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 20230 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 20291 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 20352 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 20413 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 20474 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 20535 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 20596 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 20657 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 20718 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 20779 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 20840 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 20901 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 20962 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 21023 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 21084 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 21145 29 100.0 32 ............................. CATCCCCGCGCAGCGCTAACGTCCAGGCATAT 21206 29 100.0 32 ............................. GATGCCCGGGGAAAACTAGATACCACCGCAAA 21267 29 100.0 32 ............................. CCATTTTTGCCGCCATATGCAGCTCGACGACA 21328 29 100.0 32 ............................. GGCGAACCCGCAACGGCACCGCAGCCAATGAC 21389 29 100.0 32 ............................. GGAGTAAAGGGGAATTTTTGGACATGTCGCCA 21450 29 100.0 32 ............................. ATCAGCTGCTCGCTGTAGGACATTTCTGTGAT 21511 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 21573 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 21634 29 96.6 0 ............T................ | A [21661] ========== ====== ====== ====== ============================= ================================= ================== 64 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //