Array 1 104892-106019 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMDG01000016.1 Escherichia coli strain MOD1-EC6077 MOD1-EC6077_16_length_106217_cov_22.9369, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 104892 29 100.0 32 ............................. CTGGCAATGGATCGTATGAATCTTGCGATAGA 104953 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 105014 29 100.0 32 ............................. AAAATAAATGATAATCAGACGGTTAGCAACGT 105075 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 105136 29 100.0 32 ............................. ACAATCAGGGAACGATTGTTGACACTGTAAAA 105197 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 105258 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 105319 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 105380 29 100.0 32 ............................. TGGCAGGCCGGTAATATGAAAACGACAGAGCA 105441 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 105502 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 105564 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC 105625 29 100.0 32 ............................. AGATCGACATGAGCCGCCGCGCGACGAATAAC 105686 29 100.0 32 ............................. TACCGATAATCGGTACAAGATAGTATTTACAT 105747 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 105808 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 105869 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 105930 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 105991 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGGTCTTTTTATGATTCTTAATTCGTGAAGAAATGTTAATCTATTAGTGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 60194-59494 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMDG01000028.1 Escherichia coli strain MOD1-EC6077 MOD1-EC6077_28_length_61657_cov_25.8468, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 60193 29 100.0 32 ............................. AATGGCCGGGTGGTGATGGGTTCCCGTTCACT 60132 29 100.0 32 ............................. TGGCTGAGTACTTCGGCAAACGACACGGCGAT 60071 29 100.0 32 ............................. TGTTTTCCTGCAATAAAACGACGCTCGTTACG 60010 29 100.0 32 ............................. CTTTCCATGTACTCATCCTTACGATATCCAAC 59949 29 100.0 32 ............................. CTTATAACCGGCGGCAAAAATCGTCGCGTTGG 59888 29 100.0 32 ............................. AGATTGGTTTTCCAGTCTTTGGCGGTTGGCAA 59827 29 89.7 32 .T..........C.T.............. CTGTGCCGGTAGCCCCCTCCCTGTTCAGCCTC 59766 29 93.1 32 .T..........C................ TGTTTTAGAGATGTGTATTCAAAATCAGATAG 59705 29 100.0 32 ............................. AAATTGATCCCAGGGTGATTATCAAGGGGATC 59644 29 93.1 32 .T..........C................ ATTTCTTTAATTATTTAGCTGATGCTTTTAAA 59583 29 93.1 32 .T..........C................ GGTAAAAACACGGTCTGAACCGACATTCATGT 59522 29 96.6 0 .T........................... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.1 32 GAGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTGTATGTAGGTGTTGTATCCGCAAGAATCCGTGAAATGATCTGGGAACAAATATCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //