Array 1 18010-18698 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQZZ01000001.1 Clostridioides difficile strain 17-226-09131 MRSN510011_contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 18010 29 100.0 36 ............................. ATTCCTAGCACAAGCAATATGATTGGAATGTATTTA 18075 29 100.0 36 ............................. ATATATTCATGCTCCACAAACTGGTGACGTAGTAAA 18140 29 100.0 37 ............................. AATGATAAAGCTGGTCGTATTTCATTTTGGAATGATG 18206 29 100.0 36 ............................. TACGAATGTTCTATAAATATAGAATTATTTGTCTGT 18271 29 100.0 38 ............................. CAAGTAATTTAAGATGGGATAATATAGACTTTGATAAT 18338 29 100.0 37 ............................. GTTACCTGCATCATCTTGTACCTGTCTTGCTCGAGCA 18404 29 100.0 36 ............................. TGAAATGTGAATTATTTTCAAATGTATGTTTTACTT 18469 29 100.0 40 ............................. ATCATATTAAAATGATAATTTTAAATACTTATTTATTCTT 18538 29 100.0 36 ............................. CAAAACAATTAGTAGCACTACTTAAAACAACAGCAC 18603 29 100.0 38 ............................. CCGTCTTTTGTTGCTTTACATAAATTTATATTACTTAT 18670 29 89.7 0 .................CA........G. | ========== ====== ====== ====== ============================= ======================================== ================== 11 29 99.1 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GATAACCATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGGGAATACAAAAGTTTTTAATTAAACTATGCTTGTTCAGATAGATATTTATTTAAGAAAAAAGACCATTAAAAGCAATATACAAAAATGATATATTAGATTGATTAAACAAGCATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCCAATGTAGATAGATTACGTTTTTTTGCTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGAAATTTTGCAGTGAGCGATATTTGTGAAAAAATTTGGCGTAACAGTTGAAATATAAGGCGTTGAGAGTGCATGATAAGCGTTATCAATTGCGCTATTGCTCGTTTACTGCAAATTTAAGAGAGTTGTATACGTGTAAGTATTGAAAATACTAAGTTTATTTTGGG # Right flank : TTTTTATAATTTTCTTTTAATGTGTTATCTTATGATTATCTAGTTATATTAGCATACAAAAATATAATAAAATTACACTATATTATAAAAACCAAAAGGTAGTATAGAAATCCTATTACCTTTTTATTATTAATTTTATCAGTGTTTTATTATAAATAGCTTACATAATTACACATTTTTTCTGATTAAATAATATGATGCTATTGTTATAATAGATACTAATGCTAATGATGTTATTGCAGTATCTAATCTTCTTATTAATAAACTCATTTCTATATATTCAAGTTCTATTAAATACTGATAAAATATTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTCCATACTTTAACTCTAATTTATCTAAAGATTTTTTATTACAATAATTAACTTTATGTTTAATTAAATATCTTATTGTAGCACCTATTACAATTTTCACTCTAACAAGTATAAATATAATATTCCATCCAAAAGTTAAGAGGGGATATCTTTTTTATG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 61829-64165 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQZZ01000002.1 Clostridioides difficile strain 17-226-09131 MRSN510011_contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 61829 29 100.0 36 ............................. ACTCCTGTGCCTGCACTATTAGAATTATAAGTACTT 61894 29 100.0 36 ............................. CTCTACCATAAATAGATTGTAGTTCTTCTTGCTTTT 61959 29 100.0 37 ............................. TCAATAGGACCATATCTAATAGAATATTTGCTTTTCA 62025 29 100.0 37 ............................. AAGTGCAAGAGCTAGTTATGCAGATACAGCAGCACAG 62091 29 100.0 36 ............................. TTGGACTTAAACCGCTTAAAGAACTAGCAGGTATAA 62156 29 100.0 37 ............................. TTGTGTAACTTAATATCAATAATAGCGATAGTATTGA 62222 29 100.0 38 ............................. TGATTTTTCTATAGAATTTGAAAAGAAAATGGATAAAC 62289 29 100.0 37 ............................. ATGTACAAAAACAAAGCTCCCTGGCTAAATGAAGTGA 62355 29 100.0 38 ............................. TTTGACAAGGGTGGTATGTAGATGTTAACACCTGATGA 62422 29 100.0 36 ............................. TTATGACCTAATCGCTAAGAATGTACTTTTTTTAGC 62487 29 100.0 38 ............................. TAAAACAATTGAATAAATATAATAAGATGCAACACAAA 62554 29 100.0 37 ............................. TATCTTTCTTGGCTTTTACCAATCAAGTCTATGTCTG 62620 29 100.0 37 ............................. TTAATGTTTGGAAGACATTACTCGGGATTAATACCAA 62686 29 100.0 36 ............................. TTTGCATGGTACTAGACACACATATATGCAGTTGGC 62751 29 100.0 38 ............................. TTAGCTAAAGATATTGCTAATGGTGTATAAAAATTAAA 62818 29 100.0 36 ............................. TAAAACTACGATACCTAATAATACTTCAATTAAAGC 62883 29 100.0 37 ............................. ATTTTTTATTTAAACTTAGTAACTAAAAATCTATTTA 62949 29 100.0 37 ............................. GACAAAAAATGAAAGTTACTATGAGGAATATAATATA 63015 29 100.0 37 ............................. TCTTGCTTACCATGTTTGAAATTTTCAATAATGACCT 63081 29 100.0 38 ............................. TCAAAAGTACCATCTATTTGTATTTCTATATTTTCATC 63148 29 100.0 38 ............................. TTAAAAATACTAAATGCAACTGCTCCTAAAACATATAA 63215 29 100.0 37 ............................. TGGTATTTGCTAATATTGATTAATAGTACTCGAAATT 63281 29 100.0 37 ............................. TAATAAGCTGTAAAATTTGTGTCGTTATCATCATAGC 63347 29 100.0 37 ............................. GTTTTAACATATTCCATAAATGCCTGTCTATACTCCA 63413 29 100.0 39 ............................. TCGCTTCCCGCGCTTTCTGATTCTAAATTTTTATTGCTA 63481 29 100.0 38 ............................. CGGATTTTAACTGGTTTTATGCAACAATATAACGCTAA 63548 29 100.0 36 ............................. CTCCTTAACCTACCGCATAAAAACGAAAACTAGAAC 63613 29 100.0 36 ............................. TATCGAACTGATAGAGCTGTTAAGCCTGGTACTTGG 63678 29 100.0 35 ............................. TCACTTGGTACTGTACATGGATACGCTGTATTCGA 63742 29 100.0 37 ............................. CAAGCATTTTCTAATATACTTGTATCAATACATTCCA 63808 29 100.0 37 ............................. GTTTTTGTATTTATCTCCCCTTTTTTCTTATCCTCTG 63874 29 100.0 36 ............................. TTAGAAATTTTACTTGAAAATATTATACTAAAGGAT 63939 29 100.0 37 ............................. ACTCGACTGAACATAGAAACAGCTTTTACAACTCCAA 64005 29 93.1 37 ...............T.A........... CTTATACTTAGTTAGAACTATATATCGACACAAATAT 64071 29 86.2 37 .C.............TA......A..... TGCAATTTTTATTCGTTGTCCAATCTCTTTGAAATTT 64137 29 96.6 0 ...............T............. | ========== ====== ====== ====== ============================= ======================================= ================== 36 29 99.3 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CTATTATTATATATAACTGACATTTAAGTGACATTTAAGAAAAATATAATGCCTACTTACATAAAATGGAATGTTATTTAAAGAGAACTTTGATTATATTTTCAGAAGCTTTTTTATCCATATCGTTTAAAACAAGAAAATATCTATTCATAGTTATTTTTATATTAGTATGTCCTAATCTTTCAGAGATGATTTTTATATTAGTTCCAGCTAGAAGAAGAATTATTAGAATAGATAATATAGTAAGTATTTACAAATATGTAGGTGTTCTTAAATTGATAAATTATTCCATTTTAATTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGGTGTATGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTTGCAACAAGTATAGGTAAAATACCCCAATAATTTATACAGCATTTTCTCCTTTAAAATATAATTATTTTTTATCATTTGTAGTAAATAATTACCAGATAATATTGACTTTAGTTTTAATGATTAAAATATAAAAGTAGAATAATTATAAAAAGTATTGAAAAATTTATAAATATATATAATAAAACTTAATGACAAGATATTAGATATAAAAAATAATTACCCTATAAATAGATTGAAATTTATGAATATTCATACTATAATTTAAATATAAGGAGATGCCCTTTGAAAATAAAAATTAAAAAATATTTAATGCTATTACAATAGGAACTAGAACTACACTTAATAAATATACAGAAATTAGATTTGGCTCAATATAAAATACAAATATAGAATTTAGGTGTTTTTTATGAAAAAATTTTTATATGCTTTATATAGTTTCATTGTTATTATAGCTAATTTTAGATTAAAAGAAAAAAATTATAACTTTATTTTATTAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 381782-381492 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQZZ01000002.1 Clostridioides difficile strain 17-226-09131 MRSN510011_contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 381781 29 100.0 37 ............................. GAAGCAAAGTTATTTACAAAATGGGTTACAAAAACAC 381715 29 100.0 36 ............................. CATACCAAGTCCAATATCTGCAATATTAGATTTTAA 381650 29 100.0 36 ............................. TTCCAATTTATTGTATCTCGTGAGTTAGGTAACAAA 381585 29 100.0 36 ............................. GATAGCAAAGCTTGCAAAGTAGATATTTGTGTTTTT 381520 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ===================================== ================== 5 29 99.3 36 GTTTTATATCAACTATGTGGTATGTAAAG # Left flank : TATGCTTTTAATAATATTCATAATACAATCACCTATAATTAAATTTTTATTAATTATATTCTAGCATCAAATATTGAATAAGTCATCTTCTTTAAAACATAATAAATAGTATTTTGCTCAAATTTTCAAATGCTTCTCTGTCCATCTCTTCTAAAAACTGAGAGTAGCTATTCATAGTTATTTTTATATCTGCATGACCTAATCTTTCTGAAATAGTTTTTATATTAGTTCCAGAAAGAAACATTAAAGTTGCATTATTATAGAATTTAAACATAATTAAATGTAAAAATTAATTGAAAATATTAATTATATGTTATGATATAATAAAAATATAGAAATTTTGCAGTGAGCGATATTTGTGACAAATTGAGGTTTAGCAGTTGAAATATAAGGTATTGAGAATATATGATAAGTATTATAAATTGCACTATTGCGCGTTCACTGCAATTTTAAGAGCATTGTATATGTGTAAACATTGGAGATGCTAAGTTTATTTTGGG # Right flank : TTTTTATTACATTAAAAGCAATTCTCCTAAAAACACAAATAATTGTCACAACACACAGTCCTCATATTTTACAAATTGATTCTAAAGAAGAAATAATTGTGTTAGATATGGATGAAAGTGATAATGTATATAAAAAATAGTTAGAACTTGGAGAATACGGGGTATTAGGCTGGACCAATGAAGGTTTATATTTACATTAAGAGCACTCTTTTTATAGGAGTGCTTATTTTTTTGAAATTCATTAGCATATAAACTATCAAGAACATTACTCAATATACCTTATTTACTTCACCAATGATTATCTTACATATATTAACAATAAAAAAAGACTCTAAAAAGAGTCTTTCCCGAAAAATCTATATATTATAATATAGTTATATTTTCTGCTTGAGGACCTCTAGCACCTTTAACTATATCAAAGCTTACTTGTTGACCTTCTTCTAATGATTTAAATCCTGAAGTTTGTATAGCTGAGAAATGAGCAAACACATCATCTCTAC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATCAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 257221-255536 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQZZ01000018.1 Clostridioides difficile strain 17-226-09131 MRSN510011_contig00018, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================= ================== 257220 29 100.0 37 ............................. ACACAAAGACTAATGTTGATGTAGAAGTTTTTAGCAA 257154 29 100.0 35 ............................. TTATAATCCAACTAAATTCTTTTAAATAACTACCA 257090 29 100.0 36 ............................. AAAGAACTACCACTGGGATTATAATAATATACACTT 257025 29 100.0 37 ............................. TGTTTATTTGTTGCATCACTATCTTTTGTATCATCAA 256959 29 100.0 37 ............................. AGGTGCTATAGGAAGGTAGTTTTTATGGAATATCAAG 256893 29 100.0 37 ............................. AGCTTTACAATATCAAAGAAAAATTGAAACATCTATG 256827 29 100.0 37 ............................. AAGCATTTTGTTAGTTTATTTCAAACTTTAGAGGACT 256761 29 100.0 55 ............................. CCAACTAGGTGAAAGAAGTGAACTTGAAAGCGAAGTAGTCGGGAATGACTTTTTA 256677 29 100.0 36 ............................. AGTTTATCAAGTAAACTTAACATTTGAGCGTTATAC 256612 29 100.0 34 ............................. GGTCATGTTCTTATCATATTAAAGATGTTCATAA 256549 29 100.0 37 ............................. TCATTCGTACTGTTAGTGGTAGCTGGTCTAGTAGCTG 256483 29 100.0 36 ............................. ACAGATAAGTGTAAGGAACTCCCAACAAACCCAATA 256418 29 100.0 37 ............................. TATTTTTTGAGCTCGTAACCAGCACATTTAACTTCAA 256352 29 100.0 37 ............................. TAATATATGACTTATAACTTTGATTTTTTGATTTTAC 256286 29 100.0 37 ............................. ATCGTAATGTCTTCAATCTCAAAATGTTGATTTTCCA 256220 29 100.0 37 ............................. GTACCCCTTTAACGAAATTAAAATTGAATCTAATAAT 256154 29 100.0 37 ............................. TCTCAACAACTTCTCTAGTTTTATTATAAATACGAAA 256088 29 100.0 36 ............................. TACCATACAACTATACAAATAAAACTCTGAAAAGGC 256023 29 100.0 37 ............................. CCCACAAGGTATTCAAAGAGAAATGAAGTTAGGAACT 255957 29 100.0 37 ............................. AGATTAAGTCAATCAGAAGTTAAAGAGTGTTTGAAAA 255891 29 100.0 37 ............................. AGAGCACGGCAAAATATCTTTCGAATACGAAACAATC 255825 29 100.0 37 ............................. CTATATTCTTTAATGCTAAAGTATTTATAATACTTGT 255759 29 100.0 37 ............................. AGGATAAAGAAAAGACTCACACAAGATACAGTGTCAG 255693 29 86.2 36 .........C............GA...G. AGAATATTAACAATATCAACGAGTATTTAGAAACTT 255628 29 75.9 35 A...........TA...CA....A....A TTGTAGAATCAACAATAGCATATACTAAAACATCC 255564 29 75.9 0 ACC.............A.CA...C..... | ========== ====== ====== ====== ============================= ======================================================= ================== 26 29 97.6 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAGGTCGTTAAATAGAATTAGAAGGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGCAATATTACTGAAGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGCGAGGATTCAATCTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGGATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGGATTGAAGGTGTATGATAATTGTTATCAATTGCACTACTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTGTTTTCAATGTATTCAAATATACCTATTTTGGG # Right flank : AAAATAAACTTACCTATAAACATTATAAAATCAATACAAAAATGAGGTGAAATAAAATTTATGATAAAGAAATTAAACAATAAAGATATAAATAAAATCATGGAAATATGGGAAAAAAGTACAATCAAAGCACATGACTTTATAAGTAAAGAATACTGGCAAAATAACTATAATACTGTTAAAAACGAATATATACCTATATCAGATACATTTGTATATGATGATGGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAGCTTTATAGGAGCTTTATTTATAAAGCCCAAATACCAAAATCTAGGTATCGGAGGTAAACTTTTAGATTATGCAACTAAAAAATATAAAAGTCTAAGCTTAGCAGTATATAAAGATAATAAAAAAGCAGTTGTGTTTTATAATAAAAAAGGTTTTAATATAGTAAAAGAACAAGTAAATGAAGATTCAGGATTTAAAGAGTACATAATGGAATATAGTAAATAATATGATTACAT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 270361-268691 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQZZ01000003.1 Clostridioides difficile strain 17-226-09131 MRSN510011_contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 270360 29 96.6 36 .G........................... AAAGAACTACCACTGGGATTATAATAATATACACTT 270295 29 100.0 36 ............................. ATACTATCACCTACTCTTGTTTTTGCTTCTCTAAAA 270230 29 100.0 36 ............................. GAAGATGAAAACGACAAATTAGAATGGGAACAAAAA 270165 29 100.0 38 ............................. TAGTGACTGGGCTGGTTTTAATGGAGGGGGAAGAGGTC 270098 29 100.0 37 ............................. AGGTTCTTTAAATAAGGAAAAAAGATAAATATATTTA 270032 29 100.0 37 ............................. GACTTCCTATAACGTTTATACTCACATTATAAGACGT 269966 29 100.0 37 ............................. TAGACAAGCAAATTGAAGAAGAACAAAAAGCAGAAGA 269900 29 100.0 37 ............................. TTAAAAAATCGAGAATTTGAATTAGATGATGTAACTA 269834 29 100.0 36 ............................. TTAGTTGCTGCTGTGATAGGTACAGTAACAGCAGCA 269769 29 100.0 37 ............................. CATTGTTCAAATTCAAACTTTCTATGAAGTTATTAAG 269703 29 100.0 37 ............................. ATTGGAAATGAAAAAAAGTCATTTAAAAATAAATTAA 269637 29 100.0 36 ............................. TGAGGGGTGCGTAAGTGATATATTTAAGCAATATTC 269572 29 100.0 37 ............................. GTTTCTAATGCTTTTTGAATTAGATTAGAACCCCATT 269506 29 100.0 36 ............................. GTTTTGTCTGGTGATAAAGAGGCAATGTCACTAGAG 269441 29 100.0 36 ............................. AGGAATTACAGGGTAATAAGATAAATATAACGGAGA 269376 29 100.0 37 ............................. CGTACGGATGTACGACGTAATTAAAATTTAATATAAA 269310 29 100.0 37 ............................. ACCCCTAACTCTACTGTGTAATGACACACAAACTATC 269244 29 100.0 37 ............................. TGTAGTTAATATAAAAATTCTTATTACAATATCATTT 269178 29 100.0 35 ............................. TAACCTTGTATTTGTCTAATACGATACAAAGCAAA 269114 29 100.0 37 ............................. TGTCTTTAGAAACAAAACTAATACTATTATTACTAGA 269048 29 100.0 36 ............................. TTATAGCATCTGTATTTTGAGCAATCTCCATGAATG 268983 29 100.0 38 ............................. TTTCGACCCGGTATATTTATTTTTTCAATCAAACGTTG 268916 29 100.0 37 ............................. TACTTTTTGAGTTCATAATTTGCACACTTAACCTCTA 268850 29 96.6 37 ..........G.................. TCAGGGTATGACTATTTATCTACTAGAGAAATTGACA 268784 29 100.0 36 ............................. TGCTGTGATTTCACTAATAAAACAATTAATAATTGT 268719 29 86.2 0 ................T....T.CA.... | ========== ====== ====== ====== ============================= ====================================== ================== 26 29 99.2 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : AATAATGTAGATAATGTTGAAAATTTAGAATTCAATGAGTTTGAACTTAAAACCGAAGAAGAAGAGAAGCGAGAACAAGAGAAAATAGAACAAGAAAAAAACAGTTATAATAACTACATTCAAAACAGAGTGGTTGACCCACTAGATAGAATAAAGAAACTAAAAGAGTTGCTAGATTCAGGAGCAATTACACAGGAAGAATATAATAAAAAGAAAAAAGAATTATTAGAATAGATAATATAGTAAGCACTTACAAGTATGTAGGTGCTTTTAAATTTACAAAGTATTCCATTTTAATTTTATAGTTTAGATTTTATGATATAATAAAAATATAGAAGTTTTGCAGTGTGCGATATTTGTTACAAAGTAGGGCTTAATACTTGAAATCTAAGATGTTGAGGGTGCGTGATAAGTGTTATCAATTGCACTATTGCCCGCTCACTGCAATTTTAAGAGTATTGTATATATGTAGGTATTGGAAATGCTAAGTTTATTTTGGG # Right flank : TAAATAAACAAAGAAAGCACTTACAAATATGTAGGTGCTTTTATTCTGTTCAAAATTGGTCGGTTGGGTAAAATAATTAGAAAAAATTAGTAAAAACCTATTGACTGTAACTCGTTACAATATTGTTATTAATGTAACGAGTTACAGAAAAGAGGTGAATAAAATAGCAACTAAAAGTAGGGCAGAGTATATGAAAAATCGTCGAAAAGATAAAAGAGGTTTTAGTGTACTTTTAGACAAAGAAAAGTTAGATAAATTTGATGAAGTGTTAGAGGAAAAGAATCTAACCAAGAAAGAATGGCTAGAAGAAAAAATCGACGAGGAACTGCAACAAAAGGAATAAAAAATAAGGGTCACTCCCACCGACCAAAGTTTGAGTAACCCCTATGACGTATACTATCGTATATCAATTATAGTATATGTCATTCCTTAAAAAAAATCAATTATTAAGGAGTGTAATATTATGAAAAATGAATTAATGATGTTTGAAGGAAAAGAGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 162469-163482 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQZZ01000029.1 Clostridioides difficile strain 17-226-09131 MRSN510011_contig00029, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 162469 29 100.0 37 ............................. CTGGGATTATAATAATATACACTTCTTCTAAAGTAAA 162535 29 100.0 36 ............................. CATCATTAACTAATTTTCTATACTTCATTTTATCTA 162600 29 100.0 37 ............................. AAGGAATAGTTTAGAAAGGAGAGTGAGAAAATGGCTT 162666 29 100.0 38 ............................. TTTCTTCATTGCGCATAATTTCATATATAGCTTCTCGA 162733 29 100.0 37 ............................. CTTATATGTCTTTATAGAATTTCTACTTTGTCTATTT 162799 29 100.0 37 ............................. TAAATTTTGTGGTTATATTTTCTTCTTGTCCTGCCAT 162865 29 100.0 36 ............................. AAAAGTGCAACAGCTCCTACAGCAATCATAAAAAAG 162930 29 100.0 37 ............................. TCAAAATTATTTAGTTATACTAAACATTATATTATAT 162996 29 100.0 36 ............................. TTCACACATGCTATGAGCTACTAACTTTTTTAAATC 163061 29 100.0 36 ............................. ATAAAAAAAGAACCTCCTATACTGTTGGTTCTGCTC 163126 29 100.0 37 ............................. GTAGATATAAATAGAATAAGAGCAGGTGACAAGGTAT 163192 29 100.0 36 ............................. CTGCTCTAAGCTGTGCGGCTATTTTTAATCTTTCGT 163257 29 100.0 36 ............................. ACGAAGCAGAGTATTTTAAAAAAAGTATTTTAAGAT 163322 29 100.0 38 ............................. AAAATATATTTGTATCTATACCAAACAGGAACAACTAA 163389 29 100.0 36 ............................. AACAAAAAAGATACATCTGTAACTAATTTTTATACT 163454 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ====================================== ================== 16 29 99.8 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : CTATTAACTTATGAAATATCTGTAAATGAGCATATATTTCATAAGTTAATATTTATTGTTTATATAAAATATTTGGTAAAGATAAGTAAGTTTTATATGTTATAATAATTGTAGCAAGAATAATAATCGAAAGCAGCAAGCATGTCAGCTGGTGTTATATCAGTTTATATTTATGATAAAATAAAAATCTCCCAAACGCCAATAAGGATGATTTAAAAAAATAATATTTTCACTTAAAAATAATCACTCTTTATAGGAGTAAATTATTTTCTTGATTTTATTATACTACAAATTGGTACAGATATTTAAAAATAATATATTCATAATATTATAAATAGTTTTGCAGTGAGCGATATTTTTGATAAAATAGGGCTTAACAGTTGAAACATAAGGCATTGAGGGTATATGATAAATATTATCATTTGCACTACTCGTGGTTCACTGCAAATTTGAGAGAATCGTATAGATGTAAGTGTTGGAAATACTCAATTTATTTTGGG # Right flank : GACAGATATAATGTCAAAATAAGGTTAGGACTTTTAAAAGTATAGCCATATCAGTAAAAATTTAATTATCATTTAAAAAATAAATTTTTATTTAAAGAATACACATAAATATTTCCAGACTCAACTCTCTTAAACTATTTTCATATCTTTTAGTAGATACCTTTGTTGTTTTTTAATCTTTAGCAACTTGTTCTTGAGTGAACCTCTTATTTTTTCTAAGTTATTTCAAGCTTTTCAAAAAATTCTCTATTTATATTCATCACACATATAATACAATTAATTCAGTTTTAATTGCCAATATTTAGTTTTTCTGTATCTGATAAACCAAGAATATAATCAGTATATAAACCAAAAATTTTAGCAAATATTATTAACCCATCGTCTCTTGTTGGTCTTTCACCAGACTCTATTCTATTCATAACACTTGTATTTATATTTGTTTTTTCAAGCAATTCTTTTTGAGAACTATTCATATTTTCCCTAATATATTTAATCCTTTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 108860-110343 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQZZ01000035.1 Clostridioides difficile strain 17-226-09131 MRSN510011_contig00035, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 108860 29 100.0 37 ............................. AGGTGTGGCTCTGTTTCATTGTCTGCTCATAAGAAAG 108926 29 100.0 36 ............................. TATATTAACTGGAACATTTCGTTCTATAAACATTAA 108991 29 100.0 37 ............................. GAAACAAAGAAGGTCGTAATATTGATTTTGCAATAGT 109057 29 100.0 37 ............................. TTGGTTGATGCAATGTCTAATTTTAAAGACAAGTTTC 109123 29 100.0 38 ............................. GAATATCTTCCTTATACTTATAGGAGTTGGAATTATAA 109190 29 100.0 36 ............................. GTATTTTTAACAGAAGATGAGGACTCTGTACATGAA 109255 29 100.0 38 ............................. ATAAATGCAATGAGACAAAATAAAAAGTTGGAAAAAAC 109322 29 100.0 36 ............................. TTCTTCTTTTTAGAATTATAAATATCCATGTTAATA 109387 29 100.0 37 ............................. TGATTTATCAGTTTACTTTAGAAATCGCTCAGATAGT 109453 29 100.0 38 ............................. AAGACTGGAGTTAAATATACAAAAATGTTTATTGGCGT 109520 29 100.0 37 ............................. TTTGACAAGGGTGGTATGTAGATGTTAACATCTAATG 109586 29 100.0 38 ............................. CTCAAACTATACCATTTCCCTTGCCATTTCTTATGATT 109653 29 100.0 37 ............................. ATAACTCATTCCATGTAACTCTTCCTTTAGACGCTTT 109719 29 100.0 37 ............................. GAGCTTTTAAAATGCACTGAATACTCATTTATTACAT 109785 29 100.0 37 ............................. TTGCCTCTAATTCTTTGTCATTTAACTTGCTAAATTT 109851 29 100.0 39 ............................. TTTGTTGACGCTGAACTAATCGAACATGTTGCTTTGAAA 109919 29 100.0 37 ............................. ATTATTTCAGTCATTGCAATTTCATTGAACAATTCTA 109985 29 100.0 37 ............................. GTCTTTTATATCTGTTAGGTTCATCAAAGGCAATTCC 110051 29 100.0 38 ............................. GAACATAAAGATGAAGTAAATTCAGCTAAGTTAGCAGT 110118 29 100.0 37 ............................. CATATTTCGTCGCATATATCTGTATGAGGATGTGCCA 110184 29 100.0 36 ............................. AAGTCACACCGCCCTCCACACGACACTATAATAATA 110249 29 96.6 37 .......................A..... AGTATAATGTTGAAAAGTTAGAGAGTACAATCAAGAA 110315 29 69.0 0 A.....C.........AAT....AG..TA | ========== ====== ====== ====== ============================= ======================================= ================== 23 29 98.5 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : TACAATTTATAGAGTGGAGTTCATACAAAAGATTATCCTCCCAATGTATAGAAGGGAGGTGAGTATGTATGGATAATTTTTTACAAGGTGTACTAGCAAGTTTAGTTGCCAGTTTAATAGTTTACTTAAATAGTAAATTATTTAAAAAAGTAAAAAGCCACTCTGGCAGGAGTGACTTTAGTTTTGAACTAAAAATCAAGTTCAAAAAGAATAAACATTAGTATTTGAACTTCACTCTACGTCTAAATAGATTGTAGTTCTTCTTGTTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATATTTATGATATAATAAAAATGTAAATAGTTTTGCAGTGAGCGATATTTGTTACAAAGTAGGGCTTAACGCTTGAAATATAAGGTGTTGAGGGCATGTGATAAGCTTTATCATTTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGCACATGTGTAAGTATTGAAAATGCCCAGTTTATTTTGGG # Right flank : AAAACATGTATTTATACTTAAATTCTGTACCTATATAAAAAAGTGAACTCTGTCAACAAAGCACTTTTTTATATAGATAAATTATCATTTTGTTTTAAGGTAGAAGATACTAATGATAACTGTTTATCATTAGTATCTGTATGTACATAAAAGTTTAATTTTTTATATAAATTTGCTCTTTAGAAAAATGAGCAGTATCAATAAATATATTGTTTAAATTTTTTCTAGGAACTAGTTGACTAGCTATAAGATTAGCTTCAACTCTTTGATTGTTAGACTATGAAATTAAATTTAAAGGTTCATTCTTGGTCGTATAAATAGCTTTATTATTCGTATGTACTATAACAATTTTTGCCATCTGCTTTTGATAGATAAAGAGCTTTATCAGCTTTAGAAAATAAATCTTTATATAATTTAGTTGAATCATCAGTGAAGGCAATACCAATACTTAATGTTATTTTATGATTGTCCTTTACTTTTATTTTACTTGCATCATTTAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //