Array 1 26590-28237 **** Predicted by CRISPRDetect 2.4 *** >NZ_WOAX01000004.1 Aliivibrio fischeri strain lpeal.1.2 L._peal_1.2.4336_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 26590 28 100.0 32 ............................ GTTAATATCAAAGGCTTTAACACCTTGACTTC 26650 28 100.0 32 ............................ GATAAAAATATCAGTATTATCAATGGTCGGAA 26710 28 100.0 32 ............................ AGTAAAAGTGACTCCATTAATAAATACATAAT 26770 28 100.0 32 ............................ AATTATGGCTGTATAGAAAATGTTGATTTATC 26830 28 100.0 32 ............................ TGAAATTTATGTTACTGATTGCATCGCATTTA 26890 28 100.0 32 ............................ ATTGGAGCATTAACACCAACATAAAAAGAAAC 26950 28 100.0 32 ............................ TCAATAGACTTGGGGCGCGCTATTGTTTCTGT 27010 28 100.0 32 ............................ TCTAATAACATGCCGCTTAACTGCGGTTTTTC 27070 28 100.0 32 ............................ GTCCCTAAAAATATATCTTTAATGAAATCAGC 27130 28 100.0 32 ............................ AAACTTCCCGATGACTGGATTGAACCATTTAC 27190 28 100.0 32 ............................ AATCAAGCCCGTTAGAAAAGTCAAAGGCGTTG 27250 28 100.0 32 ............................ ATCCATAATTGGACTAGCGAAAAAGCTATTTC 27310 28 100.0 32 ............................ TTTTAAGATCGCTGTTCTTGCTAGTTTTCCTT 27370 28 100.0 32 ............................ TTTGATAGTGACTTCTTTGCCCCAAGTCTCTT 27430 28 100.0 32 ............................ GTGATCCTAAACACTTTGAAGTTTACCCATCA 27490 28 100.0 32 ............................ TAGATGGGAAGCGTTAGGGAATGATAGTTACG 27550 28 100.0 32 ............................ AGAAGTTAGGGCATTAGCTGGCGAAATGGTGG 27610 28 100.0 32 ............................ TTCATAAAGAGTTCCGAACGTTCCAACACCAT 27670 28 100.0 32 ............................ GATGTCGAATACAAATATGCGCAGAACTATTG 27730 28 100.0 32 ............................ TTTCTAACAATCTCATCAGTAACTTGTGGATC 27790 28 100.0 32 ............................ GACCAGCGTACAAGTGGAAAATTCACCATTCC 27850 28 100.0 32 ............................ TATTTCAGCATCATCAGGCGCACAAGTAACAG 27910 28 100.0 32 ............................ GTTTTAAATTTGAATCTTCTCTTATCATCATT 27970 28 100.0 32 ............................ TACGGCTTAATTTGGCTAGTTTTGAGGCTATG 28030 28 100.0 32 ............................ TGTGATATTTATAAAATAAGCGCTTTTTTTAT 28090 28 100.0 32 ............................ ATTTCTAAATTAGCGTCATAAACCTTCGCAAT 28150 28 100.0 32 ............................ CGACAAGGAGGCGATCTGGCTATTAGAGCTTG 28210 28 75.0 0 ..........AT........A..TT.CT | ========== ====== ====== ====== ============================ ================================ ================== 28 28 99.1 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTCATGATTTGAATGGTGTAAGCTGGTTAGGTGGGCTTATTGGCTATTGTAACGTTAGTGAAATTACAGTGGTACCTAGTTCGTGTGAATATCGTATTATTTCACGAATTCAAAGCACCATGTCGCAATCTAAGCTTAAACGATTAATAAAACGTGGTTCAATCAGTGAAGAAGAGGAGAAAACTTATAAAGCTAAAATGTTTAGCAAAGGGCTCGATAATCCCTACTTAGAATTAGAAAGCAGTTCTAATGGATATAAGCATAGACGTTATTTACGATTTAGTGCGCCACAAAGTGAGCCGATACAAGGTAAGTTTGATCAGTTTGGTTTGAGTAAGTCAGCTACAGTCCCTTGGTTTTAACCAAAAATAACCTAAAAATTGCTCTTTAAAAACGAGTCAATAAAATCAGTAAGTTACAACAAGTGTTAAAAATTAGGTAAAAATGGGTATTTTTGCTTATCTGCTTGTTGTAACTTATTTTTATGCTGATATTCTCTT # Right flank : TTGCTAGGTTTTATAAATTGCTATTAGTTGAGGAATTATTGTTTGAGAAGAGAAAGTTTCTTGAATGGTGTGTTGTGCATTTTTCTGAATATTTTTAGCTTGAGATGACGGTAAGTTTACCCAATTTTTTATTGCTGTAGGTAGAGCATCAGGATTAACTATCCATCCATTTTCATTATTACAGATGAGTGTCGACATATTTCCTACGGGGGTTGAGATAACGGGAATACCTCGTCCCATGGCTTCTAATGCAACCATAGGTAAACCTTCATAGCGAGAGCAAATAACAAGTAATCCAATGTGTGGCCATATGGCATCCATTGAGTTTTGATGTCCGTGAAAATGAAGATTGGAAGGTGAGTTGTTTTGTAAGTCTTTTTCCATTGGACCTGAGCCATAAAAATGAAACTGTACTTTAGATAGTTGATTGGCTAATTCAAGGAAACGATCAGGGGCTTTTTCATGACTTAGGCGTCCAACAAATGCTATTTGGGTACCTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //