Array 1 119975-121685 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZYV01000083.1 Pseudomonas aeruginosa strain HUM-342 NODE_9_length_170380_cov_21.2945_ID_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 119975 28 100.0 33 ............................ CGAGATCGATGATGATGGGGAGGCTGTCTCCTA 120036 28 100.0 32 ............................ TTTGTCGGTGGCGGCATTGGCGCCCAGCGGGG 120096 28 100.0 32 ............................ GGAATCAACGGCGGCTTCGTGGTCCTAGGCGT 120156 28 100.0 32 ............................ ATCGTGACAAATTCGCCTCTGGCGAAAGTCAT 120216 28 100.0 32 ............................ ACATCAAACCAGTCAAGAGTCATCCGGAGCTG 120276 28 100.0 33 ............................ GATGGCCAGTCGAACAACCTTCGATCCACTCAT 120337 28 100.0 32 ............................ CCGCAAAAGGGGTGCATCCAATGGCCGTTGAA 120397 28 100.0 32 ............................ TTGTGCGCCCGTGGGCCCAGGACAACCAACAC 120457 28 100.0 32 ............................ TGGTCATTACCGACCTCAAAATGGGGAAGGGC 120517 28 100.0 32 ............................ GCGCTACCGGCTGCGGTACTGCTACTGCAACG 120577 28 100.0 32 ............................ ACAAAGAGCACGGCGAAGTCGCACGGCACACG 120637 28 100.0 32 ............................ GTACATGAGAGGCCGCAAGGCTATCCCAGGCC 120697 28 100.0 32 ............................ TGTCGGCCACTGAACAGGATCGTGATGTGATG 120757 28 100.0 32 ............................ TCAGAGACGGCCAGCTCAAGCCAAGCGCACGC 120817 28 100.0 32 ............................ GTCATACCGTTGAGGCGCGCCAGTTCGTCGAG 120877 28 100.0 32 ............................ AGAGCGCTGGGGGCAACTCGCGGTGGATCATC 120937 28 100.0 32 ............................ AGTCCGTACTTGATCTCGGCCCAGGCGGTATC 120997 28 100.0 32 ............................ TTGTCGCGGGGCGTCTCGCCGAGGCCGACCAC 121057 28 100.0 32 ............................ ACGCAACGACCGTCCGCCGTCGCGTCGCCGCC 121117 28 100.0 32 ............................ AGAACGAGCCACGGGTATCGGCCTTCGACTCA 121177 28 100.0 32 ............................ TCTTTGCAATCTACAACAACCCTGATCGACGA 121237 28 100.0 32 ............................ ATGTTGTTCCTGGCCTCGGCGATCTTCTGGTC 121297 28 100.0 32 ............................ AGTTCTTCGTCAAGCACGTAGGGCGACTCGGG 121357 28 100.0 32 ............................ ATCACCGCCTTGACGCCGACGAAGGCAACAGC 121417 28 100.0 32 ............................ GTCGCGACAAGACCGAACCCGACAGAGAACGC 121477 28 100.0 32 ............................ ATGACTATCTCGTCGCTTGAGATTTGCAGCCC 121537 28 96.4 33 ....C....................... TCGGGGCATGGGTCAGCCTCGCCGCGGTGCCGT 121598 28 100.0 32 ............................ TCCAGTAAGGCCAGCTCGGTCACGCGCATGCC 121658 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 29 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGTCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGAAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 132868-130559 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZYV01000083.1 Pseudomonas aeruginosa strain HUM-342 NODE_9_length_170380_cov_21.2945_ID_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 132867 28 100.0 32 ............................ TAATAGGAGTACGGACACATGTTCCTCACCCA 132807 28 100.0 32 ............................ AGGGAGTGGGAGGGATTCATTCAGTCCTGTTT 132747 28 100.0 32 ............................ GATCAGTTCGCCGTTTACGATCTCTCCGTCGC 132687 28 100.0 32 ............................ TTAATCAGCCCGTACTCTCGAAGGATTACCCA 132627 28 100.0 32 ............................ GCAGCGCAATGCCCCACCTGCAGAAACGAAAA 132567 28 100.0 32 ............................ AGCATCGCGCCAAGGGCGGCTTCGATCAGTTG 132507 28 100.0 32 ............................ TGATCGCGGTCCAGTTCGTTCGCGACGGCGAA 132447 28 100.0 32 ............................ TTCGATATCAGCGACAAGGGTCGCGCCCCAGT 132387 28 100.0 32 ............................ TCGGCGCAATGCCCGGCATGCTCAACCTGGCC 132327 28 100.0 32 ............................ ATCAGCCTCTGGCCGGAGGATCAGCAGGCGGA 132267 28 100.0 32 ............................ GAAGAGCAGAGGCAGGAATGCCTAGCTCTAAA 132207 28 100.0 32 ............................ GGTCGGTGACGGCACCATTGGCGGCCAGGTCA 132147 28 100.0 32 ............................ TGGTGGCTGGCGATGTGATCCGATTGGCCAAT 132087 28 100.0 32 ............................ AACAAGGTTTCTTCTGGCCAGGGGCTGTACCC 132027 28 100.0 32 ............................ GAATGACGCAACCGAAGCGGCAGCAGCGGCTG 131967 28 100.0 32 ............................ TTCGAACTCCTGCGCATGGAAGGCCTGCGCAC 131907 28 100.0 32 ............................ TGAGTGCTCACGGGAGGCTGAGGCCGAAAAGC 131847 28 100.0 32 ............................ TACAGCGTGATATCCAGATCATCAACGACACG 131787 28 96.4 32 ....T....................... TATGACCGGAGGCTGTCTTTGTCCGAGGTGGT 131727 28 100.0 32 ............................ ATGACCGGAGGCTGTCTTTGTCCGAGGTGGTT 131667 28 100.0 32 ............................ ATTACCGTTGCCATCGCCGCCACCGTCGCCGC 131607 28 100.0 32 ............................ TTGCGCAGGCGGTGCTGGGGCTCGCGAAGCTC 131547 28 100.0 32 ............................ TTGCTCAGCGGGAGAGATTTCCCCGTTGGATA 131487 28 100.0 32 ............................ AGGCTGCCAAGTCGGTGCGCGAGGCCGGCTTT 131427 28 100.0 32 ............................ TCATAGGGCTGCGGCAGGTTGACCACGTCGCT 131367 28 100.0 32 ............................ TTGAGGCGTGAGCGACTTCAGGAATGCGCTCT 131307 28 100.0 32 ............................ ACGACGGCCGCCTTGCGGATCTCGGCAGCGGA 131247 28 100.0 32 ............................ TCCTGGTCGTCCTGCGCTCGTACGGCCATGGC 131187 28 100.0 32 ............................ AACATCGACGGGTCGAACTGCTCCGGCACCTG 131127 28 100.0 32 ............................ TCCCGCGGATACATGATCTGGTGGTGTCGCTC 131067 28 100.0 32 ............................ TCTGGCGAAGAGCGGGATGACAAGGGCAGAGC 131007 28 100.0 32 ............................ TTGCCCGTAGAAGTACGTTTCCTGTGCCATGT 130947 28 100.0 33 ............................ GTCCTTGAACAGCTTCGCGGCGCGGGCGGTGTA 130886 28 100.0 32 ............................ ATCTACTGCCGCACAACAGGCCAGCGCATCGG 130826 28 100.0 32 ............................ AGAAGGCCGGGGTCCGTGTGTGGCGCATTGAC 130766 28 100.0 32 ............................ AATCCAGGTGACGTCGTGCATCTGGGACTCGT 130706 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 130646 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 130586 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 39 28 99.1 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAACACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGGTCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGGGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCATGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //