Array 1 36865-38572 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSON01000025.1 Pseudomonas aeruginosa strain HB392 IPC1191_25.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================ ================== 36865 28 100.0 32 ............................ TCCAGTTGCGGGGCTCGGTAGAGCTTGTCCTG 36925 28 100.0 32 ............................ GAGTAGTCGCCGGTGTTCGACGCTGCCGAGTA 36985 28 100.0 32 ............................ TCACCATCATGCTTGTACGTGCCGCCGATCTC 37045 28 100.0 92 ............................ GGCTACCAATCGGCAGCGTCGAACACCGGCGAGTTCACTGCMGTATAGGCAGCTAAGAAACTCTTCGCGGATCTTGGCCAGGAACGGGTCAA 37165 28 100.0 32 ............................ AAAACGCAGAGACCCGATGGCGTAATCTTCCG 37225 28 100.0 32 ............................ TGGCTGGAGCGGAGCGTCGGCGATAGCGCGCA 37285 28 100.0 32 ............................ AGTCTGCGCCAATGGAGAGGCCTTCCAGCCAT 37345 28 100.0 32 ............................ AGCACGCTGTGCTGAGCCACGACCTTTTCGTC 37405 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 37465 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 37525 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 37585 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 37645 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 37705 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 37765 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 37825 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 37885 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 37945 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 38005 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 38065 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 38125 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 38185 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 38245 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 38305 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 38365 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 38425 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 38485 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 38545 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ============================================================================================ ================== 28 28 98.7 34 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 49767-47097 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSON01000025.1 Pseudomonas aeruginosa strain HB392 IPC1191_25.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 49766 28 100.0 33 ............................ TGGGGACCGCCCAGCCGAAGCCGGCTGCTCCGG 49705 28 100.0 32 ............................ GAGGGCGATCTCGACTTCTCGTCGATGATCAG 49645 28 100.0 32 ............................ TGTCCGCAGCAGGCCCTAGGGGATAACTGCGG 49585 28 100.0 33 ............................ ATCTTGATCTCCAGGTAGAAAGGGAAGGCGCTT 49524 28 100.0 32 ............................ TCGATGCCCCTCTTGCGAAGGGCATCTGAGAA 49464 28 100.0 32 ............................ GCAAGGCATGCAGCCGGGCACGAAGCTCTACG 49404 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 49344 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 49284 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 49224 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 49164 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 49104 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 49044 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 48984 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 48924 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 48864 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 48804 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 48744 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 48684 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 48624 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 48564 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 48504 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 48444 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 48384 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 48324 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 48264 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 48204 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 48144 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 48084 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 48024 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 47964 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 47904 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 47844 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 47784 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 47724 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 47664 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 47604 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 47544 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 47484 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 47424 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 47364 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 47304 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 47244 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 47184 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 47124 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================= ================== 45 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGMTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //