Array 1 4572128-4567681 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT607411.1 Micromonospora viridifaciens strain DSM 43909 chromosome I Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 4572127 37 100.0 35 ..................................... GGCCTGGTCCGCCATCGTCGCGAGGTAGACGCCGA 4572055 37 100.0 38 ..................................... CACCAATCGTTGAATGATTCGATCGGTGATGGTACGTC 4571980 37 100.0 35 ..................................... GTGTCGAGGGTGACGACCACATCCCGGCCGACGTG 4571908 37 100.0 37 ..................................... TGGATCGGTGCCGCCCTCATCGCCGTCCCGGCGGTGA 4571834 37 100.0 36 ..................................... CGCGCGGACGCGTACAGGCTGCTGCCGGTCACGCGG 4571761 37 100.0 38 ..................................... GCTGGCAGGATCAGCGGACCGACCCTGGCGTTCCGCCG 4571686 37 100.0 38 ..................................... TCCGGGCCGATTCCGGTGCCCGATCCGGCGGACACGTC 4571611 37 100.0 36 ..................................... TAGCCCGCCACCAAACCCCCGGAGCACCGCGTGACG 4571538 37 100.0 39 ..................................... TACGGCTGGGCCTGCGACGAGTCCGACCCGTGGCTGGAC 4571462 37 100.0 39 ..................................... TACGGCTGGGCCTGCGACGAGTCCGACCCGTGGCTGGAC 4571386 37 100.0 39 ..................................... CCGTGCTCGGACAGGCCGGGTCCTCGGAAGATCGGCGGC 4571310 37 100.0 39 ..................................... GCGCCGGCTCCGGCTCACCGTGAGTCGATGGTGGAGCTG 4571234 37 100.0 39 ..................................... CTCAAGGAGGGGCCGGCCGGGGTGAAGAAGACGCTGATG 4571158 37 100.0 41 ..................................... CACGTCAGCGAGCCGTCGCGCTGGCACCACGCGACGATGTC 4571080 37 97.3 36 ....................A................ GTGTCGCGGAACTCGGACGTCAAGCAGCTCGCCTAC 4571007 37 100.0 38 ..................................... CACGAAGGCGGGCGCGCAGGCGATTCGCGACGGCGCGG 4570932 37 97.3 36 ...............T..................... ACCGCCGCCAGGCGCCGGCTGTCCGACGGCACACTC 4570859 37 97.3 36 ...............T..................... ACCGCCGCCAGGCGCCGGCTGTCCGACGGCACACTC 4570786 37 97.3 40 ...............T..................... CGGCCGTGACGTGACAGGCGCAGGAGCTCGTCGCGCAGGG 4570709 37 100.0 38 ..................................... CGCCGCGCTCGCCGCGGCTGGTGTGATCGGCGGGGTAA 4570634 37 100.0 37 ..................................... GCCCAGCAGACGTGCCGGGCAAGCCGATAGTGGTCGA 4570560 37 100.0 35 ..................................... CTCAAGGAGGGGCCGGCCGGCGTCAAGAAGACGCT 4570488 37 100.0 39 ..................................... CTGGGCCAGGCGTCGACGGCGGCGAAAGATGCTCCGGTG 4570412 37 100.0 37 ..................................... CGGGTGATGCAGGACCGCTGGGTCGACCGGGACGGCA 4570338 37 100.0 37 ..................................... GACGGCGCGGACCGTGTCGCCCTGGTGCGCGCGCATG 4570264 37 100.0 37 ..................................... AGGATCTCGGCGATACCGTCGTGGTCGAGGCGGATCT 4570190 37 100.0 38 ..................................... CCGCAGTAGCAGCCGCCGCAGCGCTCGGCGTCCTGCCG 4570115 37 100.0 38 ..................................... GCGGCCTGCCTGTACTTCGTCGTCGCCTACCAGTGGTT 4570040 37 100.0 40 ..................................... CGGTCAGTACCCCGACGGGCGCGACGTCGTCCCCCGCCGC 4569963 37 100.0 36 ..................................... CGTGGTGGCCGGGGAGGAAGAACTGATGAGGTACAT 4569890 37 100.0 38 ..................................... AGCGTCCGAATCTGCATCAGACCCACGGACGGGCCCCA 4569815 37 100.0 40 ..................................... GGCATGAAGTCGCCGGGGGCCATCGCGGGTCTCGGCTCGA 4569738 37 100.0 39 ..................................... TCTGCCAGTCGATCCGCGCCCACGCGGTGCCGGTCGCGT 4569662 37 100.0 39 ..................................... TCTGCCAGTCGATCCGCGCCCACGCGGTGCCGGTCGCGT 4569586 37 100.0 40 ..................................... CCTCAGGGCGGCCTCGGAGTGCATCCGCCGGATCATCGCG 4569509 37 100.0 39 ..................................... ACAGCGGCAAAGAACCGGTCCGCGAGCGCCGTCACGACG 4569433 37 97.3 34 ................................C.... GTTCGATGCGCATCGGCCCGGTCTGGGATCAGGC 4569362 37 100.0 37 ..................................... TCCGGCTCCGGGGCCGGCGGGGGAGTCTTGCCGGCCG 4569288 37 100.0 40 ..................................... TCCCCGCGCGCCCGTTGGGCGCGTCGGTCACCCGCCGCGG 4569211 37 100.0 40 ..................................... TCCCCGCGCGCCCGTTGGGCGCGTCGGTCACCCGCCGCGG 4569134 37 100.0 39 ..................................... CATAGCTTGCGCCAGAGGTTCGAGCGGGCCTGGGCGAGG 4569058 37 100.0 37 ..................................... CGTGGGGGGCTGGGGCGGTCGTTTGGGGATCAGGTCA 4568984 37 100.0 38 ..................................... GATCCTGGCCGCCCCCGTCGTCGCGGTGGCAGTCGAAG 4568909 37 100.0 39 ..................................... CTGGACACGGGTAACTCCGACGTGATCACCCAGATCACC 4568833 37 100.0 39 ..................................... GCCACGGGTGCGCCGATGGACGGCGACCCGCGCACCGAT 4568757 37 97.3 37 ...................T................. ATCGAGGGGCTCGCCCGCCTCCAGGCCGCCGCCGCCG 4568683 37 100.0 38 ..................................... CCCTGATCCACGAACTCCGCAGCACCTTCACCACCGAG 4568608 37 97.3 35 .....................C............... GCGATCAGCCTTGCAGTCGCGGCAGCGGCGGTGCG 4568536 37 100.0 36 ..................................... GCCACCCGGGGTGGTGAGGTGCCAGCCGTGCTCCGG 4568463 37 100.0 39 ..................................... ACGAAGGCGCGGAAGATGCTGCGGGACCTGGGCCTTCCG 4568387 37 100.0 37 ..................................... CGGCGCGAGCGCGGCCCATTGTGGCCAGGAGGGGTGG 4568313 37 100.0 36 ..................................... TGGGGCAACCCGGCGTACCACGTCGGCCTCTACCTG 4568240 37 100.0 36 ..................................... CGCGCTGCGCATGTCGCGCAGCAGCCCGACCCACCG 4568167 37 100.0 38 ..................................... ACGGCCGGACTCGGCGTGCAGGCTGAGCGACCTACCAG 4568092 37 100.0 39 ..................................... ACCCGCCCGTCGACCGGGCAGGTGCAGGTACGCACCATT 4568016 37 100.0 37 ..................................... GTAGAGTCGCTGTCCGAGCTGGCCGCCCGCGTCGGGC 4567942 37 97.3 38 ...............T..................... TCGTCCTCCAGGAGCGCGGCCTCCCAGTCGGTGCCGAC 4567867 37 97.3 37 .....................A............... CATCGGGACGCCGGAACGGATGTCCTGGAGCATCATT 4567793 37 91.9 38 ......................A...G.........G TATCGACTCGCGTGGATGGTCGAATCGCAGGCGCTCGG 4567718 37 100.0 0 ..................................... | G [4567694] ========== ====== ====== ====== ===================================== ========================================= ================== 60 37 99.5 38 GCTGCGCCCGGCCACCGCGCCGGGCGAGGATCGCAAC # Left flank : CGGCAAGAAGAAGCAGAACACGATCAAAGCCACCATCGCCTCCGACGCCCACGGCAGGCCGATGTGGGCCGGCGCCATCCGCCCAGGCCGACAACACGACCAGACCGCCGTGCGTACCGAAGGCATCGACGACCTCCTCGACGCCTACCCCGACGTGAAGTTCCTGGTCGACGCCGGCTACCGCGGACTGGCCAAAGACCACCCCGACCAGGTCATCGCCCCACCGCTGAAACCCAAGAACGACGCCGCACCCGACGAGGTCGCCGCCTACGAAGCAACCCGCAAAGCCCAGTCCTCGCAACGTATCCCCGCCGAACACGCCATCGCAGCGATCAAATGGTGGCGCACCCTGCAACGCTTCACCGGCCGCCGCGACGTCCTACCAGAGGTCATCCGAGCCGTAGCGGGCCTGGCCAGCGACCGCGCCGCAGCCCGATGACCAACCCCAACACCCACTACAATTGATCCCCAGGTCGTAACGCGCTGGGCCGGCTCGGCAT # Right flank : CGGCGAGCCGGCGAGGATCGCAACGCCGACCGGTCCGGGGCGAGCGCCCAGTCCCGGATCGCTGCGCCCGGCCACCGCGCCGGCTACCGCACCTTCCCGACCGGAAATCCCTGGCTGCTCCACTCGTGTTCGAGGATCGAATAGAGGAGTGAATCCCGCCAGGCGCCGTTGGTGAAGACATGATCTCTGATACGGCCTTCTGGAGTGAAGGCGAGTCGGGCGAGGAGGCGCTGGGAGGCGTGGTTATCCGGGCCGCATGCCGCCTGGATGCGGTGCAGATGCAGGGCTTCGAAGCCGAAGTTGATCATCAGCGCGGCGGCTTCCATGGCGTAGCCTTTGCCCCAGTCTTCGCGGCGGACGGCGTAGCCGAGTTCGCCGCTGCTGTCGCGTCCGAGTCCGATGCGGATGAAGCCAACTAGTACGTCGGCCCTGTTGGCGATGGCGAGATAGTAGTCGGGCCGGGGCTCTGCCTGGGCACGGGCGATGTCTTGCGCTAGGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCGCCCGGCCACCGCGCCGGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCTGCGCCCGGCCACCGCGCCGGGCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-17.20,-16.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 4583474-4573214 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT607411.1 Micromonospora viridifaciens strain DSM 43909 chromosome I Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 4583473 37 100.0 39 ..................................... GCGGTGATCGCCCAAAACTCGGCTTCGGAGACGACGCAC 4583397 37 100.0 38 ..................................... CGCGACGTCCTGACGAGGATGCCGCCCCAGGCGTAGTG 4583322 37 100.0 38 ..................................... CCCGCCCAGACGGCATGAGGAGGCCCTGATGCCCATCC 4583247 37 100.0 36 ..................................... CGCCGATCCGGTCACGTGGAACGCCGGCGACTACCA 4583174 37 100.0 38 ..................................... CGCGCCTGAATGATCCCCACACGGTGGTGATACGTGGC 4583099 37 100.0 38 ..................................... GGGAGCGGCTACAGGTGCGAGCCGATGGTGTGCGGAGT 4583024 37 100.0 39 ..................................... ATCGACACCGAGACCACATCGCTGCGGCCGGACCGGCGG 4582948 37 100.0 37 ..................................... CTCGGACACGCGTCGATCACGACGACGCAGCGGTACG 4582874 37 100.0 38 ..................................... GGCGTCGGTGAGGTGGGTGCGGCAGGAGGCGGTGGCGG 4582799 37 100.0 38 ..................................... CGCGCCTGAATGATCCCCACACGGTGGTGATACGTGGC 4582724 37 100.0 38 ..................................... GGGAGCGGCTACAGGTGCGAGCCGATGGTGTGCGGAGT 4582649 37 100.0 39 ..................................... ATCGACACCGAGACCACATCGCTGCGGCCGGACCGGCGG 4582573 37 100.0 37 ..................................... CTCGGACACGCGTCGATCACGACGACGCAGCGGTACG 4582499 37 100.0 38 ..................................... GGCGTCGGTGAGGTGGGTGCGGCAGGAGGCGGTGGCGG 4582424 37 100.0 38 ..................................... AGCTTGATGAACGCGGTTGCTTCCGCCGGCGGCATCGG 4582349 37 100.0 39 ..................................... GTCGGTGGGCTTATGGCTCATGCTGCTGCTCCAGTCGGC 4582273 37 100.0 39 ..................................... TACGACGGCGTCGCCGGTATCGCCCCGGATGTGTGGCAC 4582197 37 100.0 38 ..................................... GACCGGTAGCCGTGGATGGTCGTGGGGTCGACCCGGCG 4582122 37 100.0 39 ..................................... CGCCGGCCTCGCCGAGCTGTTGCCGGCGCTGGTCGTGCA 4582046 37 100.0 35 ..................................... CCGGGCGAGGGCCCGGTAGTTCCATCCGATGGCGG 4581974 37 100.0 38 ..................................... GCGCGGGTGCGCAAGAGCGTCGGCGCGGACGTGATCCA 4581899 37 100.0 39 ..................................... GCAGATGCGCTTGGCGAGGGCCGGTGTGCCGCCCTGCTC 4581823 37 100.0 37 ..................................... CATCCGATGGCGACGAGCGCGCGGATGCGGCGGGTGG 4581749 37 100.0 37 ..................................... CTGGTCGTGTCCGGCGTGACCGGCGCCGTCGTCATGC 4581675 37 100.0 38 ..................................... GTGGTCGAGGTGACCCGCACGTACTCGACCGTGTCGGA 4581600 37 100.0 38 ..................................... GCCGCGATCAGCCACGCCACGTGAGTGTGCCGAAGGTC 4581525 37 100.0 37 ..................................... ACAAAGACGGTGCGCGGCTTGCGCCAGCGCAGCGGGG 4581451 37 100.0 37 ..................................... TCCTCAGTAGTGCCAGGAATCCGGCTGGCCTCGGACA 4581377 37 100.0 36 ..................................... CCGTCCATCACCTACCCAGTCGCCTAACAACAAGGA 4581304 37 100.0 38 ..................................... ATCAGTCGACCGCCTGCGGTGATGCGCTCGTCGAAGAC 4581229 37 100.0 37 ..................................... AACGGCCTAGATGCGCCCGTTTCCGCTGGTGAATCAG 4581155 37 100.0 39 ..................................... GTGCAGATGGTGAATCAACGGGCGCGATCAGGGGGCCGG 4581079 37 100.0 41 ..................................... CGTCTGGGCGGTCGTGTTCAGGGCCTCCGCGATGTTCGGGG 4581001 37 100.0 38 ..................................... ACGAGCACTTCCAGCGAGCCCGCCGCCGCCATCGACCC 4580926 37 100.0 37 ..................................... GCCGACGACGGTGTCTGGGAAGTCCTCGCCGGCGGGA 4580852 37 100.0 39 ..................................... CGGGCGCACCGGTGCCGGCCGCCGACCTCCGGCATGGCG 4580776 37 100.0 38 ..................................... AGCCATGGTGGTCCCTGGGTGCTGGTGGTCGGCCCCTT 4580701 37 100.0 38 ..................................... GGTTTGGGCGAGGCGGCCACTGTGTCGGCGAGCGCGGT 4580626 37 100.0 35 ..................................... ATCGACCGAGGCCCGACGTTCCCGCTGCCGCCGAG 4580554 37 100.0 36 ..................................... CTGCGCGCCCGCTACGACGAGCGGGAGCAGGCAGCG 4580481 37 100.0 38 ..................................... AGCATCTCCCGCAGCACCAGCTTGTCCGCGTCGGGGAC 4580406 37 100.0 36 ..................................... AGCGGCTGGCCCGTGCGCCACGCGAGCGTGACGAGC 4580333 37 100.0 38 ..................................... CTCCCACGCGGTGACGGTCACCGTACGGCGGCGCAGGT 4580258 37 100.0 38 ..................................... GCCGGCGCGGCCTTGGCCGCCTTGGCCGGGGCCGACTT 4580183 37 100.0 37 ..................................... CCGTACCGCCGCCGCGGTGCCGGCCGCTGGGCCGGCT 4580109 37 100.0 36 ..................................... GATCTTGACCGGTACATGCGCGCGGACCCGTTGACC 4580036 37 100.0 35 ..................................... GCCACTTTCAAGGTGGCCGCCGGTGACGCCGGCGA 4579964 37 100.0 37 ..................................... AGCGCCTCCGCCATCAGAGCCCCCAACTACCTAGGCC 4579890 37 100.0 37 ..................................... CAATTGATCGAGCCCATGCCCGCTTACCTTCTTTCCT 4579816 37 100.0 40 ..................................... GCTGCCACTGCCTGGCGGGAGCAACTGTGGCGCAACGGCG 4579739 37 100.0 38 ..................................... GCCCGCGAGTGCATGGGCATCTGGCCGGAGGACGACAG 4579664 37 100.0 39 ..................................... GGCAAGGTCGGCACGCAGAGCGGCAAGTGCCGACCGCTG 4579588 37 100.0 39 ..................................... GGCAAGGTCGGCACGCAGAGCGGCAAGTGCCGACCGCTG 4579512 37 100.0 37 ..................................... TCGACGGAGGCGAGGGCAGCCTCCTCGATTCGGGCAC 4579438 37 100.0 39 ..................................... ATCGAGGAGGTCATCGGCCGCCGCGTCGGATCCTCCACC 4579362 37 100.0 38 ..................................... ACCGCGCCGGCCGTGGTGAAGTCCGGCAGCCAGGTGCG 4579287 37 100.0 37 ..................................... ATCCAGGTGGAGATCCCCTCGGCGGCGTGCAGCAGCT 4579213 37 100.0 37 ..................................... CGCACGCCGTCATCGATGAGGCAGCCGAACCGATCTG 4579139 37 100.0 37 ..................................... GTCAACTCTGTTGTCTCAGAGGAAATCGCCCAGCGTA 4579065 37 100.0 38 ..................................... TTCGCCTAGCGGGTAGCCACCCCTTACCCCTACCCGCT 4578990 37 100.0 38 ..................................... TCCTCAATCAAGTCAGCCAGCTCAGCGAAGGTCATGCC 4578915 37 100.0 38 ..................................... TCCTTGGTGCGAGCCATGAGAGAGATCCATTCTCGGCT 4578840 37 100.0 37 ..................................... GCCCCCTGCACCAGCGTCGTTTGCGAGTAGGACTGAC 4578766 37 100.0 38 ..................................... ACGCCTCGGCCGTCCACCCCGGACGGGAACGGGTTCGG 4578691 37 100.0 39 ..................................... AGCTGATGGTTGGGTCTCGGGAGTACACGGTGGAGGCTG 4578615 37 100.0 36 ..................................... TCCGGCTGGTACAAGCAGAACGGCACTGGCGCGGAG 4578542 37 100.0 37 ..................................... CAGTTGAACTGGGTGTCCTCGGCGGCCGGCTCTGACT 4578468 37 100.0 38 ..................................... CGCGGCGACGTCCTACGCCGCCGCACCCGCAAGGCCGT 4578393 37 100.0 38 ..................................... CCGCTCCAGCGGTACTCGCTGGTCTGGTTGGCCTGCTT 4578318 37 100.0 35 ..................................... TGCGAAGGGCTCGGCGTCTCCCCCGCCGGCGCCCG 4578246 37 100.0 38 ..................................... CCGATGGGGTACAGGCTCTTCAGTAGCGACAGGCCGGC 4578171 37 100.0 37 ..................................... CTCTCTTGGGTCGGCCCGTGCCAGCGGGCCGGCCCAG 4578097 37 100.0 37 ..................................... CGGAGCCCACATCAGGACCGGGGAGATCCGGGCCCCG 4578023 37 100.0 37 ..................................... GTCCTGCGCTGCGTCACGGACACCGACCCACAGGTCG 4577949 37 100.0 38 ..................................... GAGGAGCGGTACGGCATGAGCCGTGCGGAGTGGGACGC 4577874 37 100.0 39 ..................................... ACCCGCCCATCGTGCGGTGGGCCCAGGTGGCCGCCGACG 4577798 37 100.0 35 ..................................... GCCGAGGCCGAGGCCCTCGCGGTGCGGACCGCCGA 4577726 37 100.0 38 ..................................... CTCCGGATGAACGATGAAACTGACTTGGGTGATGAACC 4577651 37 100.0 36 ..................................... CGGCCCGACGCGGGCTGCCAGTCCGTGCCGATGCGC 4577578 37 100.0 38 ..................................... CTGAACCTGGGCACCCAGACGGGCTCGTGGGCGCTCGG 4577503 37 100.0 36 ..................................... CGGCATCCGGGACGTGACCACGCACCGGCCCCCGCG 4577430 37 100.0 38 ..................................... CGTAACGCCGTCCTGACCATCGACGGCACGGAGTACGC 4577355 37 100.0 37 ..................................... CGCAGGAACGCCCGCTTGTGGTCGGTCATCAGGTTGT 4577281 37 100.0 36 ..................................... ACGGCCGCCAGGCGCCGGCTGTCCGACGGCACGCTG 4577208 37 100.0 38 ..................................... TGCGGCGACGCGATGACGCGCGGGATGGCGTTGCACTT 4577133 37 100.0 36 ..................................... TCGGTCCAGCCGAACACCCGGCCGGTGGGGCGGATG 4577060 37 100.0 39 ..................................... GACGAGCGGGCGGCGCAGCCGCTCCAGCAGCTCGTCCGT 4576984 37 100.0 37 ..................................... CCGGATGTCGCGGGTGCCCGGTGCGCCGTCCGTGCAC 4576910 37 100.0 39 ..................................... CACCGGCAGAAGTTCGCCCTGATCAGAGCCGGTTTGGTG 4576834 37 100.0 37 ..................................... GTCGCTAGGGCCCTCCGCGAAGCCCGCAGCCGCGGCA 4576760 37 100.0 39 ..................................... TCCGTGCGGGCCAGCGCGGTCAGTACCCGCCGGGGCCGC 4576684 37 100.0 38 ..................................... CGCACGTACATCAGCCACCGCAGCAGCGACGACACGGT 4576609 37 100.0 36 ..................................... ACGGAGTACAACGTGCCGTACGACCCGACCGGGAAG 4576536 37 100.0 39 ..................................... TTTCTGGCGGACCGTCTGCACATGACTGTTGAGCAGATG 4576460 37 100.0 38 ..................................... ACGACGCGTACGTGCGGCGCAACATCCGTCCGCCCCTG 4576385 37 100.0 37 ..................................... GTCGCTAGGGCCCTCCGCGAAGCCCGCAGCCGCGGCA 4576311 37 100.0 39 ..................................... TCCGTGCGGGCCAGCGCGGTCAGTACCCGCCGGGGCCGC 4576235 37 100.0 38 ..................................... CGCACGTACATCAGCCACCGCAGCAGCGACGACACGGT 4576160 37 100.0 36 ..................................... ACGGAGTACAACGTGCCGTACGACCCGACCGGGAAG 4576087 37 100.0 36 ..................................... AGCTGGGGCTGGCCGTGGGGTGAGGCGATCAACCTC 4576014 37 100.0 38 ..................................... CTCCCGCCATGCCGCCATCAGCGACCGGATCCCGTCAT 4575939 37 97.3 39 ..................A.................. CTGCTCGGTGACCGGCTCCACGACGAACAGTGCACGGCC 4575863 37 100.0 37 ..................................... TTCGCGCTCGCCGCAGAACCGAGCAGCGCCGAACCGG 4575789 37 100.0 39 ..................................... CTCGACGCGAAGCAGGCGACCGTCGACGCTGAGCAGGCC 4575713 37 100.0 36 ..................................... TCGGCCTGCGGAGCCGCCTCACGCTGGGCGGCGGCG 4575640 37 100.0 38 ..................................... TCCAGTACGGCGACGGATTCGACGCCGACGGGCAGGTT 4575565 37 100.0 41 ..................................... GCCGCGGCGCCAGCGGTGGAAGGTGGACGGGCCGATGCCGG 4575487 37 100.0 38 ..................................... TACGGCGTCCCGGTCACGATGGGCGGCACCGCCGAGAA 4575412 37 97.3 38 ...........G......................... AGCAGGTCGTACGGCCACCGCCACGACATGGCGGTGCC 4575337 37 100.0 37 ..................................... GCGGACGCGCTGGTAGTCGTCGTCGGTGACGGGGCGC 4575263 37 100.0 40 ..................................... ACATCGGCCATCTGCCTCGGGACGTCATGAAGGGCGTCAA 4575186 37 100.0 40 ..................................... GACGCGATGACCGCGCAGACGCCCGCCGCGCCCGCCCAGA 4575109 37 100.0 37 ..................................... CCCGTACCAGCGGGCATCGAACACGGCCGGACCGGTC 4575035 37 100.0 39 ..................................... TCCTCTTCGATCGAGCGGATCTGCCAGAGCCCGACGGAC 4574959 37 100.0 38 ..................................... GGATGCCCGATGGTCCAGTGGGATGGCCGGATCAACCT 4574884 37 100.0 38 ..................................... CCGGCCGCGCAAGGCGGCGGGCCGACCCCGCAATGGAG 4574809 37 100.0 38 ..................................... CGGTCGCAGCGGCAGCACACCGGCACGGGCGAGTACTT 4574734 37 100.0 36 ..................................... TACTGCGCGGCCGAGGGTGACCACTGCTGCGAGCCG 4574661 37 100.0 37 ..................................... CTCGTCGTCCGGGTTGCCCCAGACGAGCGCGAAGGTC 4574587 37 100.0 36 ..................................... CACGCTGCGTGGTCGTGTCGCATACTGTCCGCATGA 4574514 37 100.0 37 ..................................... CTCGTCTTCCGAGAGGTGCAGGTTCAGGCCGTCGAAC 4574440 37 100.0 38 ..................................... ACCCGGGCGGCCACCACACCGACCGGGAGGTCTGAGCA 4574365 37 100.0 37 ..................................... CAGATGGCCTGCGGCGCCTGGGCGACACCGTCGACCA 4574291 37 100.0 35 ..................................... CGCTAACACGGCTTACAAGCTGCTGTTGACGGTGG 4574219 37 100.0 39 ..................................... GCCTCGATCGCCCCCTACACCGCCGACCTCACCCGCGGC 4574143 37 97.3 40 ..................A.................. ACTCATGGCCTAACCCTTTGCATCCTTGTAGACGCGGCCG 4574066 37 100.0 37 ..................................... GCGGCGGTGTCGAGCCTCGGCAAGGCGGCGCTCACGT 4573992 37 100.0 38 ..................................... TTCGGGGTGCTCATCGGGCGATCATCCCGCCCATCGGC 4573917 37 100.0 37 ..................................... CGGCAGTGGGTGGCCACGTGGTGACCCCGGACGTGCC 4573843 37 100.0 38 ..................................... GTCCGCTGGCAGCTGGTGGAGGTCAAAGCCACCGACCG 4573768 37 100.0 38 ..................................... ACCGACCGCGAACGCGAGCTGGTCGCCGAGCTGCACGC 4573693 37 100.0 38 ..................................... GGTGGAGGCGGCGTGCACCTCGCCGGTGATCTGCGCGA 4573618 37 100.0 37 ..................................... AGGAGTGCGGCGCGGACGGCGCGGAAAGAAGGCCCCG 4573544 37 100.0 36 ..................................... AACCAGCGGATGATCGACCCGACCGTCTTGCCGGAC 4573471 37 100.0 37 ..................................... AGGAGTGCGGCGCGGACGGCGCGGAAAGAAGGCCCCG 4573397 37 100.0 36 ..................................... AACCAGCGGATGATCGACCCGACCGTCTTGCCGGAC 4573324 37 100.0 37 ..................................... AGGAGTGCGGCGCGGACGGCGCGGAAAGAAGGCCCCG 4573250 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 138 37 99.9 38 GCTGCGCCCGGCCACCGCGCCGGGCGAGGATCGCAAC # Left flank : CTGCCGCTCGTGCAGGCCCGGCTGCTCGCACGCCATCTCCGCGGAGACCTGGTCACCTATCAGCCATGGACGGTGAACTGAGCCATGGACCTGCTCGTCACCTACGACGTCGAAACGATCACCCCACAGGGGCAACGCCGACTGCGTAAGGTCGCCAAGATTTGTGAAGCGTACGGCCACCGCGTGCAGAAGTCAGTGTTCGAGGTGGTCTGCCGCGAAACCGACAAGGTGCGCTTCGTCGCTGCACTCCAGGAGGCCATCGACCCGACCCAGGACAGCATCCGGATCTACCGGCTGCCGGCCCACGCCCTCGACGATGTCGAACATCTCGGCAAGCCACGGCTGATCGACCCACGGGGACCATTGGTGATCTAGGAACCCCAAGTGAACACGGAAACCCCAGGGGTTCCGAGTCAAGAAATCCGGATTAGATGTGCAAATCGGACTGCGGGCGAGTCGAATATGCATCGCCAGATCGCTATCTTCGCTGCTCGCGAACC # Right flank : CAGGTGCTCGGCGGTAACGACCTGGGGATCAATAGTGGTGTGTTGATGCGACCCGGCGTGTCAGCTTGATCGAGATGATGGCGGGCCGCACGGTCTGCTGATTTGTGACGATCAAGAAGGCCCGTGCGGCCCTGTCCCATTCTGTCTTCACCGGCATCTCCCGCAACCACCTGGACCGGCTCGTCGCCGAACTGGCCGAACCGTCCGCCGCCGCGAGGGAAGGACGGCTGCACCGCCGACGTGGCGGCCGGGGCCGCCACCGCTGGCCCGGCGCCGGACACCCCGAGACCCTGACCCTGCGCGACCGGCTGCTGCTGACCTTGGCCTGGCTCCGCCTGGCCCTGCCCCACCAGGCACTGGCCCTGCTCTACGGCGTGGACCGCTCCACCGTCTCCAACGCGATACGCCAGATCCGGCCACTGCTGGCCGGCCGCGGCTTCGCCACCCCGTCCGGGCAACGACTGCACACTCTGGCCGACGTCCTGGCCTACGCCGCCGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCGCCCGGCCACCGCGCCGGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCTGCGCCCGGCCACCGCGCCGGGCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-17.20,-16.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 4594587-4592340 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT607411.1 Micromonospora viridifaciens strain DSM 43909 chromosome I Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 4594586 37 100.0 35 ..................................... CCGAACACCCACTGCATCAGCCCGCTGCAGTCGAA 4594514 37 100.0 37 ..................................... CTCGTTGGTCATCCAGTCGATGCCCATGGCCGCACAG 4594440 37 100.0 37 ..................................... TCGAACTCCGCGCCCAGCGTCTGGGCGGTCTCGTCGT 4594366 37 100.0 38 ..................................... GCGCACTCGCGCGACTGGCTCGTGTATACGGTCGCGCA 4594291 37 100.0 37 ..................................... TCGCTTGGCATCTCGCCATTCCCCATCTCGGGTATCG 4594217 37 100.0 37 ..................................... CGCATCGTCGGCGCGGAGTACCGCGCGTCCGACGCCG 4594143 37 100.0 36 ..................................... TCGACGATGTCGTACGCCAGCTGGTGCAGCGCGGCA 4594070 37 97.3 36 ..................T.................. GGTGTGCGGCGAGCGCCCGCCGGTGATCCCCCGGTA 4593997 37 100.0 38 ..................................... GGGTTGAACGGCGACCCGGCCGGCAGCCCCGACCGGAC 4593922 37 97.3 38 ..............................G...... GCCCTTGGACGTGTTGCAGGTGTGGCAGGCGGCGAGGA 4593847 37 100.0 37 ..................................... TCGGGGTGGCACACCGTGCAGGCGTTTGACCGGTGCT 4593773 37 100.0 36 ..................................... GACGGCCTGGGTGTGCAGCTGCTCGGCGATCTCGTC 4593700 37 100.0 39 ..................................... CTCGCCCGGTAGCAGCAGGTCGCGCAGCCCGCGTGACCA 4593624 37 100.0 35 ..................................... CACGTCATCGTCCACGCCTTGTCCCGCTGCGTGGA 4593552 37 100.0 37 ..................................... ATCCAGCGGCGCCGGGCCGAAGGCCAGTAGCCCCAGA 4593478 37 97.3 38 .........A........................... TCCCCACGAGAAACGGCACCAGAGGCCCCGGCCCGGCT 4593403 37 100.0 37 ..................................... CTCGGCCAGGGGCCGTTCGGCATCGGCCCGTCGACGA 4593329 37 97.3 37 .....................C............... TTCGGCGGACGCGGGCAGCACGTGCAGTTGCCCTCGG 4593255 36 97.3 38 .......................-............. GTCCGCACCCTCGTCGGCAACGGCACCATCGACAGCTG 4593181 37 97.3 35 .................T................... CGGACGCCGCGGGCGGTGGCCAGGCGCACCGTCAA 4593109 37 100.0 35 ..................................... GATGTCCGGGCCGCGTACCTCGCGGCGGCCTCGGC 4593037 37 100.0 36 ..................................... ATGGACGACCACGGCCTGGGCCTGCCCGAGCACCTT 4592964 37 97.3 37 ....T................................ CACTACGTCTACGCGGCCCCGCCGGACGGGGTGAAGA 4592890 37 100.0 38 ..................................... GCCTGGGACCCGGTCACCGACCCCGACAACAACCCCGA 4592815 37 97.3 37 ............C........................ ACCGTGGAGATCCCCGCGTACGGCTTCCTGCGCGGCG 4592741 37 97.3 38 ....................................A ACCGACCTGGCCGAATACGCCGCATGGAAGCTTCCCGA 4592666 37 91.9 35 ......TT....C........................ GCACTTACGGCGCCGTGAAGTGGCGTGTGAGCCAA 4592594 37 91.9 38 ............C....T...C............... AAGGTTCTCGACAGCGTGCTGACCGAGCTGGCGGCGGT CCCC [4592569] 4592515 36 91.9 37 ............C.-...........C.......... GACGAGGCGCAGGACATTAACCCCGTCCTCCGCAAGG 4592442 36 91.9 31 ..........A.T...-.................... TGGTCGGTCGGGCGCCCGGCACACGCCCGAA 4592375 36 83.8 0 ....TA......CT.....T...-............. | ========== ====== ====== ====== ===================================== ======================================= ================== 31 37 97.6 37 GCTGCGCCCGGCACTCGCGCCGGGCGAGGATCGCAAC # Left flank : GTAGTCCGGGTGCGCCCCTGACGCTTGCATCAGAACCTACAGTTGAGGCGACACGGCGTCAGGCGTACGTCGGCGCAGCAGGGCTGGGAGGTGAACATGGCCGCCTGACGGGCCTAGCCTGACCGGGCCTGCTGGCGGCGCCCTGCGGCAACTCAATGACTTCGTAGGGACCATTTTCCAGCAGCAGAAATCGGTGTTCGAGGTGGTCTGCCGCGAAACCGACAAGGTGCGTTTTGGTCACCGCGCTCCAGGAGGTCAACGCCCCGGCCCAGAACTGCATCCGGGTTTACCGGCTGCCAGGCCACGCGCTCGACGACGGTGAACATCTTGCCAAGCCGCGGGTGATCGACCCACGGGGAGCCTTCGTGATCTAGGAACCCCAAGTGAACGCGGAAACACAGGGAGCTTCCGAGCCAAGAAATATGGATTGGATGAACAAATCGGACTACGAGTGAGTCGAGTGTTCATTGTCAGGTCGCTATCTCTGCTGCTCGTGAGCC # Right flank : GGGTTCCCGACCGGATGAGCGGACCACGACCTCACCGCTGCGCCCGGCGGCTGCGCACCTATACCACCCCACCTTGCGCCCATCCACCGCGAATTCGACATCACGGACCTGGACATCGAGCTGAGGCTCCTCCACCACGGCCTACAGGTAGGCCACCTCCTCCACATATCCGGAGAAATCAGACAAGGTTTGGCGATAGCCTTCCCGGCGCCCTCACCGCGGCCGAAGGCGGTGGCTGCATCGCGCTCGGCGCACCGAACAAACCAGCAACCACCGATACCATCAGGGCCTCGGCGCTAATCTCCAATTGATCGGCGAGGGGACTCAACGACGTTTGTAGGGACTACTTGTGTCTGATGTGAATCTTCTCTGGGCGCACAGCCCTGCTCCTGGCAGCAGCCGGTGGCATTCTCTTGCCGATCATCTTCGTGGCACCGCAGAGCTGGCTCGACGGTTTACCGTCTCGTTCGGCGCGGGCGAGGTGGCGTACTGGCTTGGTG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.87, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCGCCCGGCACTCGCGCCGGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCTGCGCCCGGCACTCGCGCCGGGCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-16.30,-16.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [25-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //