Array 1 7572-7805 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDQL01000006.1 Mannheimia massilioguelmaensis strain MG13T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 7572 36 100.0 30 .................................... AATATCAGGGCTGCTAATAAATCCATACTT 7638 36 100.0 30 .................................... CGATGGCACTACATTAGCATACAGTTCCAT 7704 36 100.0 30 .................................... AGGTCTGGAAAACATAAACGGGCTACATTG 7770 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT # Left flank : TTACGTAAAGCAGATGCGATTTTCATCGAGGAACTCTACAATTCAGGCTGGTACTACAAAGTGAGCCAAGCCTTTACTGTATTCCTACCAGTAAAATCCGTCGGCGTAATGGGCGATGGTCGTAAATATGACTGGGTTGTCAGCCTACGTGCAGTAGAAACCATCGACTTTATGACCGCACATTGGGCACACTTGCCGTATGATTTATTAGGCAAAATCTCCAACCGAATCATCAACGAAGTCAGCGGCATTTCCCGCGTAGTGTATGATGTCAGCGGAAAACCACCAGCAACGATTGAGTGGGAATAAACTTTATTAAAATAAGCCCTTTTTAGGGCTTATTTTTGTTATATTGAAAATAATTTTTCTCGAATATTTAAATAAAACCTATATCAAGTAATTTACTTTTTAATAATAAGTCAAAAAATTACGTTTAATAATACAAGTGTTATATTTCGCAGTACTATAATCACATCATAAGGTAAGATCATTAAACCCTC # Right flank : TAGGGATGTTAAAAAGCCTTGAGATACAGCGTTTCAAGGCTTTTTTCTTACATAAAAAATAACACTAAAACAGCAAAAGTTGGTTGGAATTAACCTTTTTTTCTTGCAGTTTTTTCTCACCAACTAGAATTTCCATATTGGCAAATTGCTTTTCTGTGATGGAGATACAGCGAATTGCTCCTTCTTCAGGCAAATGTTCGACTAATCGTTTATGATGTTTTTCCATTGAATCACGACCTCGCACAAGACGTGTGTAAATGGAAAGTTGCAACATTTGGTAGCCATCTTTCAGTAAAAATTGACGAAACTGGTTGGCGGCACGCATTTTTGCCTTGGTTGTGACAGGCAAATCAAATAACACAATCATACGCATAAAAACATTCTCACTCATATTGATGCTCCGCAAGTGGTAAAATTCCAGGTAATTTTAGCAAATCACTATTTCTACTTATCAGAGCAGCTTGTAAAGAACTTACCGTTCGATCTATTGCCGTTAAAGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 14146-14898 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDQL01000002.1 Mannheimia massilioguelmaensis strain MG13T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 14146 37 100.0 34 ..................................... AACATAAACAACGTCAAGGTTAATTGATAATTCT 14217 37 100.0 36 ..................................... GCTTTACATGAAGGTACATTACAACACCCTGTTAAA 14290 37 100.0 34 ..................................... TAATGATAGTGTTCATAATTTGTTTCCTTTTTCT 14361 37 100.0 35 ..................................... TGACTTAATAGCAGACTTTGTTAAGTTTCTAATTG 14433 37 100.0 34 ..................................... CTGTCGTAGCCTAACATTGCTTTTTCGTATTTAT 14504 37 100.0 34 ..................................... TCCCAAGAAAAAATAATTGTATCTAGAAGTGTGC 14575 37 100.0 36 ..................................... ACTATGGGTATTTCAAAACTTTAAACTAACCCTTTC 14648 37 100.0 34 ..................................... ATAATTATCAAGCATATTATTCTCCGCTTGCCCA 14719 37 100.0 34 ..................................... ATAATTATCAAGCATATTATTCTCCGCTTGCCCA 14790 37 100.0 35 ..................................... GGATTTCCCAATCGCATTTGCCACTTGTTTTTGCG 14862 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ==================================== ================== 11 37 99.8 35 GTCGAAAGACACAGCCCTGATAAAAAGGGATTAAGAC # Left flank : ATACTTAATTGGTTACGACATTGCAAACCCGAAACGATTACAAAAAATTCATAAACGTATGGTGAAATTTTCCACACCAATTCAATATAGTATTTTTTTGTATGAAGGGAATGTTGAGAAATTAAAAGCTTGCCTAAATGATGTACTCACCATTTTCAATAAAAAAGAAGATGATTTGCGAGTATATCCTCTACCCACCGGGGCAAAACAGTGGCAACTCGGTAAAGCGATTCTGCCTGAAGGGATTATTTGGACAGCATTACCATTTAATACTCAAATTCACTAACTTACACAAATTAGTCAGGCTTTAGAGATTTTTTGCAAAAATTGGTCGTTTTAAATGCTCAATTTTGCTAAAATAAACTTAGTTTTTTGATTGTTAGGAATAATGATTTTGATGAAAATTTCGCCAAATCAATACCCAACTATTCTGTTTGTTGAATATTTTGGGAACGCTATATTTAGCTTATTGAAAGAAAAAGAAAATATAAACCTCCGCG # Right flank : ATGATATCTGTTGATGGGTGGCTGTAAACATATTCATTATTACAATGAAGAACGAATCAAGCCAAGTTTAAAAAATTTGAGCCCTGTATAATACAGAGCTCAATCTTTAAGTAAGTTGATAAACCGCCCGGAGTTTATGGAGGCACATTAAAGTGCGGTGTAAATATTAAAAATTTTATTCTTTTGGTAGTCTTATTACGGAGAGGATAAACCCACCCCAAATAACAACTAAGGCAACAATCATCATAATAATTGCAGTAGTACTCATTTTATTCCTCCGAAATTTGAATTTCATTTTTCCATTTTAAACGTGAAAGTAATACAGCAACAATCACCAATAAAATTGACATTCCCCAACCAAAGGTATTAACAAACCAATTTGGGTAGCCTTCGTATCCTTCTGTGAAAACTTTTGCGCCTTCACTGAATAGCATAAATGCCAAAATACCTGTTGTAATAACAATACATAAGCGCCAAATAAAGCCAACTTTAAATGATGA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACACAGCCCTGATAAAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 404254-405147 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDQL01000008.1 Mannheimia massilioguelmaensis strain MG13T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 404254 32 100.0 34 ................................ TGATGCTGTTGAGCAAGAGATGATTGCTTGGCGG 404320 32 100.0 33 ................................ TAATTTTTTGATTTTATTGTGGTAATAATTGAA 404385 32 100.0 35 ................................ CATCTAATAATATTAAATTTGTTAATTGTAACAGC 404452 32 100.0 34 ................................ ATCCCAGTTAAACCAAAGTTGGTAAAGTTTTTGA 404518 32 100.0 35 ................................ CATTTCGGGTTTGGCTCGCCATGGGAAAGTGTGGC 404585 32 100.0 34 ................................ TCGTTGCGAGAATTGACGGCGATATTGCACAGCT 404651 32 100.0 34 ................................ TTTAAATAGGACCTGTAGCAGTTGATTTATAAAT 404717 32 100.0 34 ................................ TGATGTAAATTGAATATCAGGAATATATTTTGTC 404783 32 100.0 35 ................................ AAACAATTTAATAATAGGGCTAAATTATGGCAATG 404850 32 100.0 35 ................................ TTGCCCATCTACCTCAATCACTCCTAAACTTGCAT 404917 32 100.0 34 ................................ TGCATCAACGTTTATCCCCATGTTGAGTAGCTGA 404983 32 100.0 35 ................................ TGGCATGTTAGTCCATGCTTTAAGGATTTGCTTGC 405050 32 100.0 34 ................................ GAGTAAGCGGTTTAATTTCCACCACATACGGCTT 405116 32 96.9 0 .......................A........ | ========== ====== ====== ====== ================================ =================================== ================== 14 32 99.8 34 CTCCGCTCCCACACGGGAGCGTGGATTGAAAC # Left flank : TGTACATACTTTTAAGGAATGCTCTATGATGATTTTAATTACCTATGATGTATCGCTTGAAACAGAAGGTGGACAACGTCGTCTTCGACATATTGCCAAACATTGCCTTGATTACGGAATCCGCGTACAATATTCTGTCTTTGAATGCGAAGTAACTCCTGCTCAATGGGTTGCACTCAAAGATAAACTCCTCAACACCTACGACAGTGAAACTGATAGCTTGCGCTTTTATCAACTCGGTGCAAACTGGAAACACCGTGTCGAACATCATGGTGCTAAAGCTGCGATAGATATTTTCCGCGATGTGTTAATCATTTAGTCCATCGCTAACCCTCAGTTCTCATCAAATCTGTCATCGATTAGCGAATTTATTTTTATAATAAAAGTAATGAGTTAGATTTCATTATGATTTGTTGATATACTGAACCCTATTATATCTGACCTGATTAGCGAAACCTCGCTTTTCAAACCAGATATAACGTGCCATCATCAATATGGCA # Right flank : CAACGGAATGAACCGCCCTGCTATAGTGTTCGGTGTCCCTCATTTTACATAGGCATAAGAATTGAAACTATGCACTATCACTCCATGCCTATGTAACTAATTTTTGTTGCGATAATTAAGCATAATTTAAAACAACTGCTCAAAATGCAACAGATGTTAATATCAACCTCTATATCATTAAGCAATAATTTACTGTGTTATTAAAAATAGGAATACGTTAAGTTAAACTTTCGTTAGCTTGGATGTTAAGGTAAAATATTCTAATCTTTTTATTACACTGAGAACTTTATGGCATACACTACTTTTTCCCAAAATAAAAATGACCAATTAAAAGAACCGATGTTCTTTGGTCAAAACGTTAACGTTTCACGTTACGATCAACAAAAATACGAAACTTTTGAAAAGCTTATTGAAAAACAACTTTCATTCTTCTGGCGTCCTGAGGAAGTCGATGTGGCACAAGATCGCATCGACTATGCCGCATTACCAGAGCATGAAAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCGCTCCCACACGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA //