Array 1 11-310 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSDX01000022.1 Bifidobacterium bifidum strain IPLA 20017 Contig22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 11 36 100.0 30 .................................... TGCGTCGTGCTGCGGCAGTGTCTATACATA 77 36 100.0 30 .................................... GCGTGATCTGCTCCAGTCCCTCGCCGTTCT 143 36 100.0 30 .................................... CGAACATCAGATCTCTTCATCTTCCTCATT 209 36 100.0 30 .................................... CGCGTTTTTCCCTCACGGCCACACCGTCGC 275 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTTTCAGATGCCTGTCAGATCAATGACTTTGACCAC # Left flank : AACGGGCANCG # Right flank : CAGGACGTCCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGATGCCTGTCAGATCAATGACTTTGACCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [5.0-6.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 49-1926 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSDX01000021.1 Bifidobacterium bifidum strain IPLA 20017 Contig21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 49 36 100.0 22 .................................... AAATACAACAACAACACACACA Deletion [107] 107 36 100.0 30 .................................... CGGATGGCATTTCGACGTAAACAACTCTAA 173 36 100.0 30 .................................... TGGCACTCGGCAGAGCTTCAGCGTAGTGTT 239 36 100.0 30 .................................... AGCTCTTGGAGGCTGATATGTTTGTGATCT 305 36 100.0 30 .................................... TAGCGCATACGTGGGGATATCGTACGATAT 371 36 100.0 30 .................................... GGTATGCGCCGACCTGAATGTTGTTGCCGT 437 36 100.0 30 .................................... AGCATACCCTGTGGGCGGCGACGTGTATGC 503 36 100.0 30 .................................... GTCGGCCAGTCGCTGCCACAAGAGACGCCA 569 36 100.0 30 .................................... CTCAACGTCAATACGTTCGTGGATGACCAA 635 36 100.0 31 .................................... CAAGGAGTACACACATGGAGATCATCACGCC 702 36 100.0 30 .................................... AGTTGTCCGACAACTCCGATTACGCTTCCA 768 36 100.0 30 .................................... GTCTCACCAGAAACACCTTTGGATAAAGGA 834 36 100.0 30 .................................... TCATGCGTGCTTATGGTGCTGACTCATTGA 900 36 100.0 30 .................................... CGATTACGCTATCAGATATCTGTATGCCGC 966 36 100.0 30 .................................... CTATGTAACCGGCGTAGTAAACGCGATCAT 1032 36 100.0 30 .................................... CGCGGACGGTGGCACCGTTTTCTACCATTT 1098 36 100.0 30 .................................... CATCGCGTGTCTTGTCATCTGCGAATTTAA 1164 36 100.0 30 .................................... TACCTCCTGGCCGTAGCGATTGATGTAATC 1230 36 100.0 30 .................................... GTGCGTTAGGCACGCCGGATGACTGCATGT 1296 36 100.0 31 .................................... CCAGTTAACAGTATTGTCCTGCACTTGCTGG 1363 36 100.0 30 .................................... CATACAAGCGCGTTTCATCGAACACGATTA 1429 36 100.0 30 .................................... TGAGGGTGCACTATGCCTAGTCGCAGTCCG 1495 36 100.0 30 .................................... CCGTACCGTACTCGGTAAGCCCGTGGAAGT 1561 36 100.0 30 .................................... CGTAATACAGCAAATTGTACTCCAGAAACC 1627 36 100.0 30 .................................... ACACGTCCATAGACAGCAGAGACACGGCGA 1693 36 100.0 30 .................................... GTGTCATCAGTTCGTGGAATACGCGAAGCT 1759 36 100.0 30 .................................... GCGGATACCCCGCCAGCCACAACCCATAAT 1825 36 100.0 30 .................................... CCGAGCCCGTCTACGGAGCGAACGACGGTA 1891 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 29 36 100.0 30 GTTTCAGATGCCTGTCAGATCAATGACTTTGACCAC # Left flank : ATCAATGACTTTGACCACCGTAGCCGCGTCCGTGGTGAACAACGCGCAG # Right flank : GACTGTGGGCACGGACAACAACGGGCAGCCGTTTCAGATGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGATGCCTGTCAGATCAATGACTTTGACCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 106770-107401 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSDX01000008.1 Bifidobacterium bifidum strain IPLA 20017 Contig08, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 106770 36 97.2 30 T................................... ATATCTAACCACGAATATAGTTAGACATGA 106836 36 100.0 30 .................................... CCAGCAGGCCAAGTTAAGCGGCGTGAGTTT 106902 36 100.0 31 .................................... AACCATAGGGGGTTACTGTGCCACAATAAAA 106969 36 100.0 30 .................................... CAATATCACCACTGACCGGAGTCAACGCAA 107035 36 100.0 30 .................................... ACAGGTGCACGTGGTTCCGCACGTCTGGGA 107101 36 100.0 30 .................................... TCGAAGCATCCTTCAAGGAAGGAGAGCGAA 107167 36 100.0 30 .................................... TACGGGCATGTGACGTAGTAGGTGCCGACG 107233 36 100.0 30 .................................... ACCAGAGCGGACATGTGCGGAGCAGACCTG 107299 36 100.0 30 .................................... GCGTCAACGAGTGAGAAATCGGAATCAACA 107365 36 94.4 0 ..................................TA | T [107395] ========== ====== ====== ====== ==================================== =============================== ================== 10 36 99.2 30 GTGGTCAAAGTCATTGATCTGACAGGCATCTGAAAC # Left flank : TGGGAAGCTTCCCGGACGGGAACGGCGCGCTCATGCTCGTCTGTGCGCGCATCAGGTACGTCACCGCGAACGAATGGTCCAACCGGCGTTACCTCGACATGTCCCGGCTCGGTGACAATCTGCAGGAAGCGAACCGGTCATCGCGCCATGGGCGGGCATGATCCAAAGTGCGCAACCTTTCGGGCACTACCTCCCAAAACCTCCACTGAACGGAAAAATCAAGCCACAACAGACACTGTCAAACAGGCTTACACACCTTGAAGCATGAAAAAAGCCATCAGGGACTTCCTGATGGCTGGTCATTTGCGGTATGCGCTCCACTTATTCCTTGGGCATCGGCCTGAGGCCGCCAACGACAGCGCTCTTCACATAGGATGTCACTATAACAGTCCGAATATTGTGCATCAATCGTTTCCCATATGTCACCAGAATCAAAAGCACACCCCGGAAGCTATCCAGAAGACAGCAACAGAGGTGCCCCTAACACTATTGCGCATCAC # Right flank : ATTTGACTCGTTGGGGTCCGGGGTTATTGCGTTTGGGGGCCATTATGAGTTTTGGTGGTTATTGCGTTTCGAGGCCGGGGTTATTGCGTTTGGGAGCCGTGGTTGGTTAGGCTCCTTTCACCATGCGAGGGACGTGTGGTGAAAGGAGTTACCAGCAATGGTACGAAAAATACAGGCGAAACTGGTGCTGCGTTTGCATGCCCAGGGTTTGTCGGGGCGTGCGATCGCGAGGTCGCAGGGCATGTCGCGCCGGAGCGTTTCCGATGTGCTCGATGCGGCGAGGGCCGTCGGCGTCGGCTGGGATGATGTCACCGGCAAGACCGACGGCGAGGTGTACGCCCTGTTGTTTCCCGGTCGGGGTGAGCGCGAAAGCGTGTACGAGCAGCCCGACTGGGCCAGGGTTCATCGCGAGCTGGCGCGTGTGGGCGTGACGTTGAGGATCCTGCACGGCGAATACGTGGACGGATGCCGACGGACCGGGAAACCCCATATGGGTTACG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCAAAGTCATTGATCTGACAGGCATCTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 112450-110037 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSDX01000008.1 Bifidobacterium bifidum strain IPLA 20017 Contig08, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 112449 36 100.0 30 .................................... ACAACCTTTACTCCAGCTATCTACAGGTCA 112383 36 100.0 30 .................................... CGGTGACCTTGGTGTCGGTGATACGATTGT 112317 36 100.0 30 .................................... GTCCGTCGTCTTCGGCGGCGGTTCTCTCTT 112251 36 100.0 30 .................................... TGCCACTATCGCCTACCCGCATAGCAAGCC 112185 36 100.0 30 .................................... GCAACACGATAACCACCAACAAAACAATCA 112119 36 100.0 30 .................................... TGGCATATGCCGGAATGTCAGTCACGTTCA 112053 36 100.0 30 .................................... ACACGTCCGCGTTGCGATGCATAGGACGTC 111987 36 100.0 30 .................................... TCAGAATGAAGCATGAAATCGGATTGAGGG 111921 36 100.0 30 .................................... GCAAGCATGGTGCTGGACGGCAACGCTTTC 111855 36 100.0 30 .................................... CGGACGTGAACCGTAGCCGCCGTGACTTCC 111789 36 100.0 30 .................................... CGTACTACCCGCATATCACTTCGGGCATAG 111723 36 100.0 30 .................................... CAAGTACCTCAGCCTGAGCACGCTGCTCCA 111657 36 100.0 30 .................................... GACTGTGGGCACGGACAACAACGGGCAGCC 111591 36 100.0 30 .................................... TGCTCAAGTGGGTGGCGGTGCTGGTCATTC 111525 36 100.0 31 .................................... TTGGAGTGTATATGAACGTTAATGATGTTGT 111458 36 100.0 30 .................................... AGAGTAGATCGGCTGCATGAGCTTTGGCAA 111392 36 100.0 30 .................................... TGCGTCCTCGGCGCTCGTTGAGCCATCCGA 111326 36 100.0 30 .................................... TGTGTATGAGACGGCAAGATGGACTGAGGG 111260 36 100.0 30 .................................... CATGCCGAAGTTCTGTAGCTGGCTGCCCAC 111194 36 100.0 30 .................................... TACACGATGCGCACACGCGCTGGTCATGTG 111128 36 100.0 30 .................................... TCAGCACTCTCTCGACCATCGTGAACTGAC 111062 36 100.0 30 .................................... GCGTGATTCTAGCGGCGCTAGGGCGTGCGA 110996 36 100.0 30 .................................... GCTGATCCGCGACGGCGTGCTTGATTCGTT 110930 36 100.0 30 .................................... GTTCAGGAACTTCAGATGGGTCACATCGTC 110864 36 100.0 30 .................................... AGAATGCATTCCGATCTGGGATAACCGTAT 110798 36 100.0 30 .................................... AGTGTCCTCCTCCCTCCGACTGTCCACACG 110732 36 100.0 30 .................................... CGCCGCCGATGGATTGTTCGAGGTTCGCGG 110666 36 100.0 30 .................................... CTTGGAACGCGGTCAAGGACGGCGTATCGT 110600 36 100.0 30 .................................... CGCGTTGATCTTCGGGGACGAGAAGTGGAT 110534 36 100.0 30 .................................... TGCTGTCAGCTTGTGCATCGGCTTGTGCAT 110468 36 100.0 30 .................................... CACCGTCGATGTATGACGGTCGGAGTCCCG 110402 36 100.0 30 .................................... CTTATGCAAGCGCGCTACAGTCAGCAACTC 110336 36 100.0 30 .................................... TCCAGCTCTGTTCGACGCCGTCGATGCGTA 110270 36 100.0 30 .................................... CACGATGTATCACAATCACTGGGGCGTTTA 110204 36 100.0 30 .................................... CGGCTTTGTCGCTGGTGCGGGCTTTTGTGG 110138 36 100.0 30 .................................... CGTCTTTAGCCGCGGAACCGGTGGAAACGC 110072 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 37 36 100.0 30 GTTTCAGATGCCTGTCAGATCAATGACTTTGACCAC # Left flank : ATTGCGCGGATGAAGTGGATTATAATGCTTTGTTCCAGAAGCTTGCTGTCAAGAAAATAATCGAAGGATTTACGCCGGAGCAAATCAGTAGATTATTGTCTTTGCAGGCTGAGTTAAAAACAATTATTCAAGATGAGATATGGGGTCAAAATCTACCTCTGACTATTCCCTGCGATTTGGATTTGAAAGCAGCAATTGCAATGGCCAAACCTCGGATTGACACGAGTTCTTTGGGATCCTTGTATGATAAAATTTCGACGGCAGTAGATACTGCCGGTGCTCTTGCCGAGAGCAGGATGCTGGTGACGCTTCATACAACTCAATACTGTGATAACGACCAATTACTTTATCTGCACCGTACTTTATTGCGGTACCAGTTGCAGCTTCTTGACCTGGAATGCTGCAGCAAGAAAGTCATGCTGACAGAGGGGATGAGCCACTATGTCGATGAGGATTACGTTCAGTTCTCATGAACTGTTCAGGAATCCTTAAGGCTATCG # Right flank : TGCTTGACGGGTACAACGTGATAGGCGTGTGTTTCAGATGTGAATATTCGTAGCTTTTGAGGCCACTGGTTATTGTGTTTGGAGGCCGGGGTTATGGTGCGGGGAGGCCGGTGGCGGACTGGTTGGGGGCCACCGGCCTTTTGGGTTAGTTGTCGAGCATGGTTTGTCCGTGGCGTTGTCTCATGTTGTATTCGCCGGTATTAATCCAGATCGTGTTGTGCACGATGCGGTCGAGGATCGCGTCGGCGATGGTGTCGCCTCCAAGCTGGCGGTGCCATTCCTTGGTCGCCAGTTGGGTGGCGAACGCGGTGCTGGCCGTGTCGTACCGGAGTTCCATGAGCTCGAGCAGGAATCGTTTGAATGGTTCGTCGGGCTTGTCGACGAGCCATTCGTCGATGGCGAGCAGGTTGTAGGTGGAGTATTTGCGCACGAGCTTGGGCACGCCTCCCGGTTTGCCGGCCGCGGCCGTCACCTGTTCGGCGAGGTCGGGCATGCGCACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGATGCCTGTCAGATCAATGACTTTGACCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //