Array 1 251764-253256 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYJB01000003.1 Salmonella enterica strain BCW_5839 NODE_3_length_377683_cov_4.98916, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 251764 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 251825 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 251886 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 251947 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 252008 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 252069 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 252130 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 252191 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 252252 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 252313 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 252374 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 252435 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 252496 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 252557 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 252618 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 252679 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 252741 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 252802 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 252863 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 252924 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 252985 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 253046 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 253107 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 253168 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 253229 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 269388-271230 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYJB01000003.1 Salmonella enterica strain BCW_5839 NODE_3_length_377683_cov_4.98916, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 269388 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 269449 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 269510 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 269571 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 269632 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 269693 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 269754 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 269816 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 269877 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 269938 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 269999 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 270060 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 270121 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 270182 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 270243 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 270304 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 270365 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 270426 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 270487 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 270548 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 270610 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 270671 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [270713] 270713 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 270774 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 270835 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 270896 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 270957 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 271018 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 271079 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 271140 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 271201 29 100.0 0 ............................. | A [271228] ========== ====== ====== ====== ============================= ================================= ================== 31 29 98.6 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //