Array 1 219834-221692 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOCK01000081.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R9_3245_R1 NODE_5_length_250286_cov_1.65617_ID_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 219834 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 219895 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 219956 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 220017 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 220078 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 220139 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 220200 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 220261 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 220322 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 220383 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 220444 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 220505 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 220566 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 220627 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 220688 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 220749 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 220810 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 220871 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 220932 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 220993 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 221054 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 221115 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 221177 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 221238 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 221299 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 221360 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 221421 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 221482 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 221543 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 221604 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 221665 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 31 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 237804-239280 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOCK01000081.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R9_3245_R1 NODE_5_length_250286_cov_1.65617_ID_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 237804 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 237865 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 237927 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 237988 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 238049 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 238110 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 238171 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 238232 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 238293 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 238354 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 238415 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 238476 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 238537 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 238599 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 238702 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 238763 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 238824 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 238885 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 238946 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 239007 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 239068 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 239129 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 239190 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 239251 29 96.6 0 A............................ | A [239277] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //