Array 1 3805477-3804350 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP062220.1 Salmonella enterica subsp. enterica serovar Kottbus strain Kharkiv chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3805476 29 100.0 32 ............................. TGTGCTGGATAGTACCTACAGTAACTTTGTGG 3805415 29 100.0 32 ............................. GGAGTGTTTCAGCGCCGATGCAACGAAAAGTC 3805354 29 100.0 31 ............................. TGCTCCAGTGGGCTGCTAAGGGGCTTGGGGG 3805294 29 100.0 32 ............................. CCGATTTTCAAGATGCGCGTAACGGTCATTAT 3805233 29 100.0 32 ............................. CTGCCGCTTCTTTTCTCTATACAGATCTTAAA 3805172 29 100.0 32 ............................. TTAACTCCACCGTATCGCCAACCAGTAATTCT 3805111 29 100.0 32 ............................. ACCAAAATCCTGATCCCACGTTACGGCCCACA 3805050 29 100.0 32 ............................. ATTTAAATGACGTGCAGGAATACTGGATTAAC 3804989 29 100.0 32 ............................. AAACGCTCCCTCACCGAGCAGCGGCAAACATA 3804928 29 96.6 32 .............T............... AGTTCAACCGATTTTTTACACGGCGTTCGCAC 3804867 29 96.6 32 .............T............... ACCGAAAAAGAGCTCGAAGTGCTGGCGGCAAA 3804806 29 96.6 32 .............T............... CGTTGGATGACCTGCTCCTGGATACGTGGCAA 3804745 29 93.1 32 .............T...........T... GCAAAACCACGTGGCCGCGACGGGGTAAATAA 3804684 29 96.6 32 .............T............... CCGACATCAACAGCATGGCCTACGTGTGTAAC 3804623 29 96.6 32 .............T............... GCGCGGGAACGTGGGATGATGCCAGGACCATC 3804562 29 96.6 32 .............T............... CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 3804501 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 3804440 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 3804379 29 93.1 0 A...........T................ | A [3804352] ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGAGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3823026-3822023 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP062220.1 Salmonella enterica subsp. enterica serovar Kottbus strain Kharkiv chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3823025 29 100.0 32 ............................. GCTATCGCGAGCGGGTGCTGCCGTTCGTGACG 3822964 29 100.0 32 ............................. CCATGATCCTGCTTATCGATAACTATGATTCC 3822903 29 100.0 32 ............................. GCTCGCGCGCAGTACGAACAGGCGCACCGGGA 3822842 29 100.0 32 ............................. TGAAGAACGGCCAGCCCGTCGAGGTATCAATC 3822781 29 100.0 32 ............................. CGTTGTCGTTGCTGGACAGAACTCCGGGGACG 3822720 29 100.0 32 ............................. GATCGCTCATGATTGATCGAGCTGGTGGCCAC 3822659 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGGCAG 3822598 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 3822537 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 3822476 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 3822415 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 3822354 29 100.0 32 ............................. TCGATATAGCAACTTTTTTAACTATTGCGTGG 3822293 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 3822232 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 3822171 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 3822110 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 3822050 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //