Array 1 231-19 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGDH01000020.1 Salmonella enterica subsp. enterica serovar Legon strain NRWCIIIA .SLX_12186.D703_D506.HJ72NBBXX.s_1.r.20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 230 29 100.0 32 ............................. GCGGTGCTTCGCTGGTGGACGAGGCGCTAAAC 169 29 100.0 32 ............................. AGGCTCAGGAGCGAGAGCAGTTAGCGAGCAGG 108 29 100.0 32 ............................. CATACTGCGGAACACAGTTCCACCCATATTGG 47 29 96.6 0 ...................A......... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTACTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTAAAAACACAAGTCTCA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 21-1453 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGDH01000031.1 Salmonella enterica subsp. enterica serovar Legon strain NRWCIIIA .SLX_12186.D703_D506.HJ72NBBXX.s_1.r.31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 21 29 100.0 32 ............................. TTAAAAACACAAGTCTCATTATGGGAAAAAAT 82 29 96.6 32 ............................C AATCGCGTTACGCTCAATGCAGGGAACCTGGA 143 29 100.0 32 ............................. TAACTACTGAATTTCAAAACGCGGCTACTCTT 204 29 100.0 32 ............................. GGTTGTCTGGTAATGCTGCATATTCACGCCTC 265 29 100.0 32 ............................. AGCCGTTTATATTAATAATGTAACATGTAGAA 326 29 100.0 32 ............................. GCTACGGTAATGCCATAAACGCACAGGCTGCT 387 29 100.0 32 ............................. CAATACGACTGGACGGGATTTGATTCATTAAC 448 29 100.0 32 ............................. GCCCACAAGGAAGGCGCTTACTTTGTTGCTAA 509 29 100.0 32 ............................. AGATCTCTACGTCGGAGAATTCTGGCGAATCC 570 29 100.0 32 ............................. GGCTATCGCAGCGTTCGTGACCTGATAGCGTC 631 29 100.0 32 ............................. CCTTTAAGGGAGAATGCCCAATTTGCAAGCGT 692 29 100.0 32 ............................. ATTTTAGCAGTTCCTCCGCAATATACATTGCC 753 29 100.0 32 ............................. GCGTCAGCGTGGCGCGCGTTGAGGTATTGCGG 814 29 100.0 32 ............................. TTGAACCGTCAACTGGAATTAATAATTTAATT 875 29 100.0 32 ............................. CCGTTAATTTTGCTGATGGAAATGATAATGCA 936 29 96.6 32 ............................T GGTCGGAGGCACGAGTGGAATAGGCGCGATAC 997 29 100.0 32 ............................. ATGCGGCGGTAGTGTCATTTGTGCCAGTCTGA 1058 29 100.0 32 ............................. GGGTCTGGTCAGGGAACTACTGATACATATTC 1119 29 100.0 33 ............................. CCGGAAAACTTCCTGTCGAGCCGCACCTCATGC 1181 29 100.0 32 ............................. CTGCCGTCATTTAAAATAACCTGAATTGTATA 1242 29 100.0 32 ............................. AATTTTCCCTTTGCGTTAATACTCCATCGGAA 1303 29 96.6 32 ............................T AATTATTGACCCAGACGGAGGATGGAGTAGAG 1364 29 100.0 32 ............................. CGAAAGTAGAACGGGCGGGAGAATATTTAATA 1425 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CACAGTTCCACCCATATTGGG # Right flank : TTAAAACGTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [16.7-13.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 401-6 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGDH01000047.1 Salmonella enterica subsp. enterica serovar Legon strain NRWCIIIA .SLX_12186.D703_D506.HJ72NBBXX.s_1.r.47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 400 29 100.0 32 ............................. AGATGGCACAGAATCAGGTTTTTCAAGCGCCG 339 29 100.0 32 ............................. CTGATCCAACTTACCAAATTAGTGCTGGTAAT 278 29 100.0 32 ............................. GGTATCAACAAACTGTTATTTCATTCATTACG 217 29 100.0 32 ............................. GATTATTATCTGGTGTTGATATAAACGATAAT 156 29 100.0 32 ............................. TTAATATTAATGATTATCCTTCCGGAGTAACA 95 29 100.0 32 ............................. ACCGCCAACTAAGCCAGCGCCAAACCCACCAG 34 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CATCCATTAGAAAATAAAT # Right flank : GGACTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16-958 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGDH01000008.1 Salmonella enterica subsp. enterica serovar Legon strain NRWCIIIA .SLX_12186.D703_D506.HJ72NBBXX.s_1.r.8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16 29 100.0 32 ............................. GACTTTGTAACCGATCCACATAATACACATAG 77 29 100.0 32 ............................. GCGTCTCCATGCCGTTGATAAACATCCCGCCC 138 29 100.0 32 ............................. ATCAGTTTCCCGACAGTATTGCCGTTCTGCTG 199 29 100.0 32 ............................. AAAAAATGGAGCGCCTGCAGTCGACGTTTACC 260 29 100.0 32 ............................. ATCCTGAATATGGAACATGTCGGATAACGTTT 321 29 100.0 32 ............................. GCGCCAACCATCAGGGTTTAACCAGGCGATGA 382 29 100.0 32 ............................. GCTTCGCTAAATGACACGGCTAACTCAGTAGC 443 29 96.6 32 ............................C TCACAAAACCGCTGCGCCAGCTTAATGCGGTC 504 29 100.0 32 ............................. TCCGAAACCGCCGTCGCACTGGCTGACGGTGT 565 29 100.0 32 ............................. CAGTGTTTCCCGATGCCTGAAACTTTCCATGA 626 29 100.0 32 ............................. TTGCAGGGTGATATTGTTGTTGGTGAATGGGA 687 29 100.0 32 ............................. CGTTTTCTCCGGAGAACCGCTACAAATACTAA 748 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 809 29 100.0 32 ............................. AGAACCATCTTTCTGCGATTTATACTCAACGA 870 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 931 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCCAAACCCACCAGG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 9399-10587 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGDH01000008.1 Salmonella enterica subsp. enterica serovar Legon strain NRWCIIIA .SLX_12186.D703_D506.HJ72NBBXX.s_1.r.8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9399 29 100.0 32 ............................. CGATTCGCGCTGGATCATCTCGTTCGCGCCGC 9460 29 100.0 32 ............................. CGCCCAGATACTGGCAGACCAAATTGCAGCAC 9521 29 100.0 32 ............................. ACGACGTCACTAACCGAATTTATAACCTTGGT 9582 29 100.0 32 ............................. GACGCATGGGAGCACGGTAAACCACTGGCGCA 9643 29 100.0 32 ............................. CAGCCGCCTGGCAGAATAAACACCGCGGAACA 9704 29 100.0 32 ............................. TCAACGAGACACGCAGCGCGCTGGACGGTTTC 9765 29 100.0 32 ............................. GGGATTTTGATTCCTGACGATGTTTTGTGCCG 9826 29 100.0 32 ............................. CTGAGCGTAATAGGGAGGAATATGCGCAAAGC 9887 29 100.0 32 ............................. GGACGGGTAACAGCGTGCTTGGTTCTGGTAAC 9948 29 100.0 32 ............................. CGATGGAATTTAGGGGGATATCTCAGAATAAA 10009 29 96.6 32 ............................A CTTTGGTGCCTATTGGCAACCCCATTAAGTCC 10070 29 100.0 32 ............................. ACATAAACGGACGCGCGGGGATCCGAATTTTT 10131 29 100.0 32 ............................. TTCGCCGTCGTGAAAGCGGGTGAGCATTCCAG 10192 29 100.0 32 ............................. CTGGCCCCGCCCCGTGGTGTTTTTCGAAATTT 10253 29 96.6 32 .............T............... GCTGATAGCCAACCTGTAAGTGATCGTGATGA 10314 29 100.0 32 ............................. GTGCGAAAAATGGCAAAAGGATCGAACAAAAA 10375 29 100.0 32 ............................. TCGGCCTGTGCGGTTGCGGCCTGCCATTGCTC 10436 29 100.0 32 ............................. GAACAGATCACGCTCGGCGACGCGGCGGTTAT 10497 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 10558 29 96.6 0 A............................ | A [10584] ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCTGCAAGCCTGCTGGCGCAGCAATTTTCTGCTCGTATACGCCGTCAACGAGTGCTCTGGCATTATCCGGCATACGGATCTCACCATGTTGACGCAGTAGCGCCTGTGTACGCCACAGGCAGGCATGATCGGCGTAAACAAAGCCGGTACCTTTTAGCTCTTGCCCCAACCAGCCCTCTTCTGCCTGCTCCTGCCAGTGAGGGGCCAGAATATGCAATATTGGTGGCTGGCGTTCATCCGGAAGCGTAGATTTTCGTTGCCCATGGGCATCGCGGATATGGCGTTGCAGGCGACCGGCGCGCTGGATCAATAAATCAATCGGCGCCAGATCGGTGATCATCCAGTCAAAGTCCAGATCGAGACTTTGTTCAACGACTTGTGTGGCGATTAATACCTTACCACGTCGTTCAGAAACGGGGGCATTGTTACCAAACCAGTTTAACGTTTTATTTTCAATAGCAATACGATCGATAAAAGCAAAACGGCTGTGGAAAAGCAAA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //