Array 1 21943-18740 **** Predicted by CRISPRDetect 2.4 *** >NZ_CEKF01000032.1 Streptococcus suis strain S97X, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 21942 36 100.0 30 .................................... GAGTAATATCGTCATGGATATCCAAGACAA 21876 36 100.0 30 .................................... ATAGACCGAACTTGAGCAGTCATAGCTATT 21810 36 100.0 30 .................................... AAGGCGATATAATAGCTGGCTCTATGTTAT 21744 36 100.0 30 .................................... CAACGGTTGGCAACTTTCTCAAATGTTTTA 21678 36 100.0 30 .................................... TAAGGAACTCATGAATCAAGAATAAATCCT 21612 36 100.0 30 .................................... CAGTTGAGTGCGAGGGCTTGACGCTAGATG 21546 36 100.0 30 .................................... ATGAAGTATCAAACCCATGTAATGGATTAT 21480 36 100.0 30 .................................... TAAGCAAGGAACGACAAAACGAGCGTTTGA 21414 36 100.0 30 .................................... ATGTATAGAGCATTAAGGCTATCTCTCAAC 21348 36 100.0 30 .................................... CCAATTTCTCCGCTTCTTGTTAATTGGTTC 21282 36 100.0 30 .................................... ATTTTGTTAACGATGCGATTGGTCATAATA 21216 36 100.0 30 .................................... TTGGCAATTAATTATGTAGGAGGACGATAA 21150 36 100.0 30 .................................... AGCCTTTATGGATTCATCTAGCAGAAAGGC 21084 36 100.0 30 .................................... AAAAAGATTTACTGACCCACGTTTTCTATT 21018 36 100.0 30 .................................... GACCTCATGTTTGAAAATGCTGACTATGTC 20952 36 100.0 30 .................................... GCCTGTTTGGCAAGGAGAGGAACTCGTCTC 20886 36 100.0 29 .................................... GACACAAATACATAAAGTGTATGTGAACT 20821 36 100.0 30 .................................... AGGACGGGCGGAAATGCTGACAAAGACCCT 20755 36 100.0 30 .................................... TTGTCGACGCTTTAATTGACAAAAACAAGT 20689 36 100.0 30 .................................... GATATATGCTTTAGCATTTTCTATTCGTCT 20623 36 100.0 30 .................................... AAGTTTTGGGGGAGATTATCAACGAACAAC 20557 36 100.0 30 .................................... ATGTTCTCGTTCAAACCGTGCGACATGTTC 20491 36 100.0 30 .................................... CTATTTTTGGTATAAGAAACCTGTGAAATC 20425 36 100.0 30 .................................... TATTACAAAAAGCAATCCGTGAGGAATTGC 20359 36 100.0 30 .................................... TATTGAGAATTTCAGCCTTATACCCAGTTA 20293 36 100.0 30 .................................... CTTAACTGCAGGTGCTAGTCGCAGATTCTT 20227 36 100.0 30 .................................... TAACAAAGGGGATTGGCATCGTTCATTAGA 20161 36 100.0 30 .................................... TCTGGTTTCAAGTCAAATTCAGCTTGTATG 20095 36 100.0 30 .................................... GTGATTTTTTCCAATCTATTTCTTCTGTCT 20029 36 100.0 30 .................................... ACAGGACCATATCAGCCCATTCCTTGACCT 19963 36 100.0 30 .................................... GCTAGATTTGACATTTTATTTCTAACCATA 19897 36 100.0 30 .................................... CGTTCGAGATTGACCCGCTGATACCTTTTG 19831 36 100.0 30 .................................... TGTAGCTGACCAAGAAAGATTGGACAATTT 19765 36 100.0 30 .................................... TCAAGCCGTACGGTAAGTTTCTGGTGACCA 19699 36 100.0 30 .................................... GTGTGTAGATAATAGAAGAAATATCTGTTA 19633 36 100.0 30 .................................... CTGACTCTAAAATGAGGGAAGAGCGATTGT 19567 36 100.0 30 .................................... AACTGGAAATGCCACAGTAAACAAAGAAGA 19501 36 100.0 30 .................................... TGCAACTGCCGACCAGACACAACAGGCTCT 19435 36 100.0 30 .................................... TGATGATAAGGCACAACTTCGTACAGACAT 19369 36 100.0 30 .................................... AAATGTACCAGGGTATCGTCGAGGAGACCG 19303 36 100.0 30 .................................... AAATGATTCACTAATTGAGGCGAGGTCATT 19237 36 100.0 30 .................................... GGTATTCTGAGGAATGGTCAAGCTACCATA 19171 36 100.0 30 .................................... CGCATTGTCCACTTGATAGACAATGATTTT 19105 36 100.0 30 .................................... CCCAACCCTTGAAACATCTTGCCCATACCT 19039 36 100.0 30 .................................... ATTTTTATATTTTGCCTTGTGTAATAAGAT 18973 36 100.0 30 .................................... GTGAGTCAATACTATCATGACCGCTATACG 18907 36 100.0 30 .................................... TAAATTAGCAGCGATTATCTTGCATCAGTT 18841 36 100.0 30 .................................... GGCTTTTTTGATTTTCCGTCTGGTTAAATT 18775 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 49 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACGGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG # Right flank : CGTTAAAAGACAAATTGATAGGGTAGTTAGTTTTAGAGTTGTATTGCTCTAAAAAGTTCTTTTAATTCTTAAAAGCAATGTAGCAAAAATATTTAAGTGTCAAAAAGAAAGGGGATTGTAGATGGATTCAAAATCAATTATTATAACGTCTGGTTATAACAGTAGTAGTGAATATTTTAACTTTAATCATCAAAATAATTGAAAGTAAAAAGTATAGATGAATTTGATTTAAGCTTCATTTTTTTAGGATAAAAACTAGTGCACAGACAAGTAATTCTCTACCATAAACTTTCAAAGTTAAAATGATGATTAACAACATCCAATTTTCCTCCAAGATTTCTAACTGACTCTTGCCCCACCCCCCTTTTCCATGCTATACTAAATATTATCGTTTTACTTCAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACCGACGGCATGATTGTTGGACTGGGGACTGGCTCAACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //