Array 1 141927-140373 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINBK010000074.1 Escherichia coli strain C6-10 c_000000000074, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 141926 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 141865 29 100.0 32 ............................. ACGCGGGGTAAGTTGGCGCGGTCCTGGTGTGT 141804 29 100.0 32 ............................. GAAATATAGCGTTAAATAGTCAGGTGACAGAA 141743 29 100.0 32 ............................. CCCCGCGCCGCGCATCGGGTACGTGTAGTCAT 141682 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 141621 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 141560 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 141499 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 141438 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 141377 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 141316 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 141255 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 141194 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 141133 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 141072 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 141011 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 140950 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 140889 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 140828 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 140767 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 140706 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 140645 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 140584 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 140523 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 140462 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 140401 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 26 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 168326-167626 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINBK010000074.1 Escherichia coli strain C6-10 c_000000000074, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 168325 29 100.0 32 ............................. CTCTGTTGCCTTCACGGCATCGCGCAACCCTG 168264 29 100.0 32 ............................. CAAAACTGGTTTATCTCCCGCGTAGTCCGCCC 168203 29 100.0 32 ............................. TTAGCCCGGCCAGTAGATTTTGCTCGCTGCGC 168142 29 100.0 32 ............................. GCGCAGGTTATCCGCTCTGTGCTCATTGACGT 168081 29 100.0 32 ............................. GGACAACATCGTAGGGGAGTTATAACGTTCAA 168020 29 100.0 32 ............................. TCGTCAATCCTATGCCTGCTCATGAGCATTAT 167959 29 100.0 32 ............................. CCGGACACTACCGAACGACAGCGGCGGCGGGC 167898 29 100.0 32 ............................. GGCGAATACAAACGCTGGCGCAACGAGTCCTA 167837 29 100.0 32 ............................. ACGCCAGCGGTGGCGTTACTGAAATCCTCGGT 167776 29 100.0 32 ............................. CCGCCGGTTACTGCCCCGGCGTTCACTGCCGA 167715 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 167654 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //