Array 1 6327-5960 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059565.1 Neisseria wadsworthii strain DSM 22245 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 6326 32 100.0 37 ................................ GCTAGGTTGCACCGTATCTCTCTGGATTGAAATTCTG 6257 32 100.0 35 ................................ CACTCAAGACGAGTTAAACCGCCCATTTTGTTCGC 6190 32 96.9 35 ............A................... AGACGGCTCGCACGAATACCCAAACCACCGTCTTC 6123 32 100.0 35 ................................ AAGCTTTGGGCGGTACTTATTCTTTCAGTTTGCAA 6056 32 100.0 33 ................................ GCAGTCACCGGAAGACGCAATCAATTGCCCGAT 5991 32 87.5 0 ........G...A...........T......G | ========== ====== ====== ====== ================================ ===================================== ================== 6 32 97.4 35 TCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : AATAAGGGGAAATAGTGTGTTGATGTTGATTACTTATGATATTTCGCTGGAAGACGCGGCAGGGCAGGCGAGGTTGCGGCGCATCGCCAAACATTGCTTGGATTACGGCGTGCGCGTGCAATATTCGGTATTCGAGTGCGACGTAACGCCTGATCAGTGGGTAAAACTCAAAGCCAAGCTGCTCGACACTTACCAGCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGAAAGGTGGAACATCACGGTGCGAAAGCGGCAGTGGATGTGTTTCAGGATACGCTGATCGTGTGAATCGCTAACCCGTGGTTCTCATGAAAATGCGGGGCGGTTAGCGATGCGGGATTGTTCTTTAACAATCAGGAAATTAGGAAAGTGGGCGTGGCGGAATCAGGCTGTGTTATACTCGCTTTTCGCGTTTTCGGAGAGCTTTAGCGAATCAGGGCTGTGCAGGCCTTGATGGATAAAGGTTTTCGAGAAGGCT # Right flank : TGTCTTATAAATCAGTGAGGAAATAATGAAAAACAAAGCGACCTATAAAAGGTCACTTTCATTCTCTCATTGTTCGGGTTTAGGTTTGATGTCATTAAGATGCAAACGTTTTGCTTCGATTTCTGCATCAGTTAGAGGATGGTCGGCATGTTCTTGCAATTCTTCTACTGAGTTTTCAATCACCAATTCACGCTCTTCGGCTTCCATTTCTGCGGCAGGGGTAACGTCGAAAGTGCTGTCGTTTTGATTTTGGCTCATAGCGTCTCCTTGTTTTCTTGTATTGAAAATGAAGAAACATAGTAACACGGCAAGTTGGTGTTAGAAGGGTTGTTGCATATTTTTACGCCATATTGAAATCGGGTAAATTATGGTTAACTATTCAAATTATAGCTGTATCGATTTGCAGCGGTTTTATCGCTACACTTCCATGCCTGTCTGAAAAACAAAATGTGCAATCAATTACTTCCAAACCAGCAAAGCATGGTTTCTCTTGCCGCGGC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 859438-859671 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059565.1 Neisseria wadsworthii strain DSM 22245 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 859438 36 100.0 30 .................................... GAAATAAACTACGAGATAGGCGGCAAAATA 859504 36 100.0 30 .................................... TTGACATAGCCGCCCTCGTGGGAGAGGACG 859570 36 100.0 30 .................................... CCTTCTGTATATACATCCACATCTTTTTTT 859636 35 77.8 0 ......................-...A.T.C.TTCC | C [859661] ========== ====== ====== ====== ==================================== ============================== ================== 4 36 94.5 30 GTTGTAGCTTCCTCTCTCATCTCGTAGTGCTACAAT # Left flank : GCTGGAGTTTCCCGAGCGCAAAATAATAGAGAGCGAACTCTTGGCCGTGCAAAAAGCATTTCAGGCGGATTTTGTGTGGCGCGACACAGCGCACAGCCAAACTTTACAGCAAGAGTTGAATCTGTATTTTGAAGGCCGTCTGAAAAACTTCGCCACGCCGCTCGACCCGGTCGGCACACTCTTTCAGCGGCAAGTTTGGCGCTCATTGCAAAGCATTCCCTACGGCGAAACCCGCAGCTACAAGCAGCAGGCGGAACGCATCGGCAAACCGCAGGCCGTGCGCGCCGTAGCCGCCGCCAACGGGCAGAACAAAATTTCCATCCTGATACCGTGCCACCGCGTGATCGGCAGCAACGGCGACTTAACCGGCTACGGCAGCGGCCTTGCGCGGAAGAAGGCGTTGTTGGAATTGGAAGGCGCAATGCCTGTCTGAAATAAAGATAAGATGGAAATTGATATGGTCGTGACGGTGAAAAGAAGAAAATAAAATTTCAAGTGTG # Right flank : CAAAACTGAGCCACAGTTGTGGTCTAAAATTGAGCCACCCTATGAGCGGTGTTTCATCCGGTAAGAATCATTGCCCGTCTCAAAAATATCACAGCAATAAGTCAGGCGGTCCAGTAAAGCACCCGTCATCTTTTCATCCATAAACAGCTTCACCCATTCGCTAAAGGCCAAATTGGTTGTCATGACAACACTCGTCCTTTCATGCAGTTGGCTCATCAGATGAAACAGCAGCGCACCGCCTTTCTGACTAAACGGCAGATACCCTAACTCATCAAGAATCAACAAATCGTACCGACATTGCTGCTCGGTCAGTTTCAGACGGCCTTCGTCTTTGTCTGCTTCCAATTTGTTGACCAAGTCCAGTACATTCCAAAAACGTACCCTAAATCCTTGTGTCGCCGCTTCGATACCCAATGCTGTGGCAATATGCGTTTTGCCCGTACCCGGTCCGCCTACCAACACCACATTACGCTTCTGTCTGATATAGTCCCCGCCCAAAA # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTTCCTCTCTCATCTCGTAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTTCCTCTCTTATCTCGTAGTGTTACAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 3 862055-863745 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059565.1 Neisseria wadsworthii strain DSM 22245 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 862055 35 83.3 30 T...C..A..-T..A..................... TCCTTCATAGTTATAGTGCCTGTATAGCCA C,A,AA [862060,862064,862069] 862124 36 100.0 30 .................................... ACCCAACATGGCGTACATCAGTAAGCCCTC 862190 36 100.0 30 .................................... TCGGCAGACTGCACAGGCGTGGTGTAAAAA 862256 36 100.0 30 .................................... GACAAAATGAAGCTGCCTCACGATGTGAAG 862322 36 100.0 31 .................................... TTTGATAGCGATGCTGAAGCTTTTGTTTATA 862389 36 100.0 30 .................................... TTCTCGCAACCCCTCCGTATCCACCAGCGG 862455 36 100.0 31 .................................... TATAGCTTTTGACCGTACGCACCATGGCGCC 862522 36 100.0 30 .................................... TCCCGAATACACCCATAGGACGCGCAGCGG 862588 36 100.0 30 .................................... GGCACCGGTAAACATATGCGGCTCAAGCGA 862654 36 100.0 30 .................................... AAATTCCCCATCATAATGTTCTTCACAATT 862720 36 100.0 30 .................................... TGGCGGGTGCGCAAATGGCAGCCGGATTGC 862786 36 100.0 30 .................................... TACGAAATGTTCGTATGCTTCGCTTTTTGC 862852 36 100.0 30 .................................... CAAAGCGATGGAAGATAGAGGCGACACGGA 862918 36 100.0 30 .................................... TTATCTGCCCGGCGGGAGTACGCTGAAAAC 862984 36 100.0 30 .................................... GGCAGGTGCTGTCGTAGTTCCTCCCCCTGC 863050 36 100.0 30 .................................... AGCTTATCGTCGCTAAAGCCTATTGCCCGG 863116 36 100.0 30 .................................... AGGCAGAAATATTTATTTGGAAAAAGCTAG 863182 36 100.0 30 .................................... TTGCGGGGGCTGCCTAAACGGATCGAAGGG 863248 36 100.0 30 .................................... AAAGCGAAAGTTCGATGCATCGTTACGCTT 863314 36 100.0 30 .................................... GCAGCTTTGAGGTGTCTGGCGAAAGCGGGT 863380 36 100.0 30 .................................... TGTTTCCGGTATCGTTGTTGCTCCGTGCTC 863446 36 100.0 30 .................................... CGAATGTATCGCAGATCGACCGCCTCCGCA 863512 36 100.0 30 .................................... AAACAAAAGAATTGAAGGAACACGTCGAAT 863578 36 100.0 30 .................................... CCCTACAACGAGCTGCGCTACACCACCGAT 863644 36 100.0 30 .................................... TCCACCGCCAATTAACCGTCGAGCCGATTA 863710 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 26 36 99.4 30 GTTGTAGCTTCCTCTCTCATCTCGTAGTGCTACAAT # Left flank : ACTGATAAGCATCACCCGGAGCAAAAGCCTGAGCCATAAAGACCGGAACCGGCTTGGGTTGGTGCTGTTGGCGGAATTTGCGGATAAATACGGCAACGGCACTGTACTGTCCGGCATAACCGGCATCTTTGAGGCGTTCGAAATGTCGACGGGCAGAAAGGTGTTGCTGTTTGGGCAGCCGGGCTTCTTGGAGCAACTGTTGGGTCAACACGTCAAGAAAAGGACCGAGCTTGGGGTAATGGGTTTGTTCTCTGCGGTAGACGGGGGGTTCGACTGTGGCGTGCTGCAGATATTTGGCGACTGTATTGCGGGAGAGTTTGAGTTGTTTGGCGATTTCACGTTGTGAGAGTTTCTGTCGGTGAAAAAGCCGGTGCACTTTTGCGATGGTTTCCATGCATAACATCCAGGTTGGGCTCCGCTGTGTGATAAAGCGGAGCAGTTTATAACAAACGGAGAGTGGCTCACTTTTGGAGCACAACTCCCCGTTTCCCTGGCTCAGT # Right flank : TACTTCAACAGGGAAGCCTTATAAAATAAGGCTTCCCTGTTTTATTTTGGTTAAAAAAACGACTTTAAAAAAGTAAAAGTTGGTCGGCATTGACCTTTTTTTCGCGGGGTTTTGGCTCTCCAATAAGCATAACCATGCTTGCATATTGTTTTTCTGTTACCTCCAAATAGCGGACTTGGCCTTCTTCGGGCAAATGTACTAACAGTCTTTTGTGGTGTTTCTGCAACGAGTCGCGTCCTTTTACAATGCGTGAATAAACCGATAATTGCAGCATGTGATAACCGTCTTTCTGTAGAAATTTACGGAATTGGTTGGCTGCTTTTCTTTTGGCAGCGGTGGTTACAGGCAAGTCAAAGAAAACGATTAAGCGCATAAATTTGGCCTCACTCATAATCATGTACCTTTAAGCGCAGCATTTGTGGCAGTTTTAAAAGTTTGGGTTTGTTTTGGCTGATGGCCGTCTGAAAAGATTGTATGGTGCGGTCTATGGCAGCCAATAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTTCCTCTCTCATCTCGTAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTTCCTCTCTTATCTCGTAGTGTTACAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //