Array 1 68068-66385 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRQP01000013.1 Parabacteroides merdae strain AF31-17 AF31-17.Scaf13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 68067 32 100.0 34 ................................ TGAAAGATGAGTATGACTTTGAAATCAATCGCCT 68001 32 100.0 34 ................................ CGAGAAACTTTTTACCTTCAAATCCGCAACCAAC 67935 32 100.0 35 ................................ AGAAGATTTTGAAAGAAGGGACAACGGCAACCAAT 67868 32 100.0 34 ................................ ATATTGCATTTGCTCAAAAGCTAAATCCCGGAGA 67802 32 100.0 35 ................................ ACGAGCAAAACACTCATTATAATGAGGGCCACAAA 67735 32 100.0 34 ................................ CAATGATACCTAATGTCAATCCAGCATTACCAAC 67669 32 100.0 34 ................................ CCAGATAGCAAATCTACCACACTGTTGGCCTCCA 67603 32 100.0 33 ................................ CGTTTGAATATAATGGCGTTTCGCTGTTGTTTA 67538 32 100.0 34 ................................ ATATTTTTGTAGTCGTGAACAGTATTTAAAAGCT 67472 32 100.0 33 ................................ TTTTCTTTCAAACACATCATTGCGCCCTCTAAC 67407 32 100.0 33 ................................ TATTGTGGCAGGAGAAGATGATCCTGAAAAATG 67342 32 100.0 34 ................................ TTGAGACGGATAAAACACTTGGAGCTAATGCTAT 67276 32 100.0 35 ................................ TTGACAGTGATAACAGTAGCGTAATAAGTTTGCAA 67209 32 100.0 35 ................................ TGTAAAGGATAGACAGGATAATGCAGGGAAAGAAA 67142 32 100.0 33 ................................ CATAGCGGTAGGAGTAGCCATAATAGGGCCTGC 67077 32 100.0 33 ................................ CTGTTTGTCTCTTACTCCTTATTCCCAATTCAT 67012 32 100.0 35 ................................ ACGAATATAAATACGATCAAAGCCCAAGGCCTTTT 66945 32 100.0 34 ................................ ATGGAAAAGAGTAGGGAGGTCGAAAGCGTGATAT 66879 32 100.0 34 ................................ AGGAACGGGTAAACATACTTGAATATGCCGCTTT 66813 32 100.0 33 ................................ TTTGAATTTACCCCCTTTAGAGGATATGGAAGC 66748 32 100.0 36 ................................ TTATATTGTACATCTATTGCCATCAAATGAATCATT 66680 32 100.0 34 ................................ AAGGTCAAAACGCTTATTATTAAGTATAGCGGTA 66614 32 100.0 34 ................................ CGTTATATGTTTTATAACATATAGTCGGTTGTTG 66548 32 100.0 34 ................................ AATGGACGAGCCGTTGAAAGAGCTGTCATACTTG 66482 32 100.0 34 ................................ AGTTGACAACCGGTACGCGTGTCCTTCGGAGTCT 66416 32 84.4 0 .......................C....GCCA | ========== ====== ====== ====== ================================ ==================================== ================== 26 32 99.4 34 GTCGTACCTTATATAGGTACGTGGATTGAAAC # Left flank : TTTAGATAATTATCCGGTCTTTTTAATGAAGTAAGTTCATGTATGTTCTAGTTACATATGACGTAGAAACGATGACTTCCGACGGACAGCGCAGGTTACGTCAGGTAGCACGTCAATGCCTGAATTATGGCCAACGCGTCCAAAATTCCGTTTTTGAATGCTCTGTCTCGCCTGCTCAATTTACCGAGTTAAGATTAAAACTATCGGATATCATCGATCATAAAAAAGATAGTATTCGTTTCTATTTCTTGGGAAATAATTATTCTAAAAGAGTTGAATACATAGGTGTCGTCACATCCTATAATGTAGAAGATGAACTTATAATATAACTGTTTGCGAACATTAAGCATTAACAAAAAGCTGGAGTTTTCGCAATCATTGATTATTAGCCTATTAAACACTCCTATTAGTTTTATTTCATCAATAAAAAATCCAAAAAGTTTATTATCGCATAAATGCATTGATAACAGACTGTAAATGTTTGCATTATTTGTAATGCA # Right flank : GAAGTTGATACACGTGTCATAGCCGTCGCACCCGTAAAGGATGCGACGGTAATGTTATTGTTGTAATTCAGACACATTTCAATCCAAACGCACTATTATAACCAACTCAATCTGTAACACCTATCACATCAACAGTAGTTCCTCTACCCAAGCACCGTCCAAAACCAATCCGGCCCGTTCATCATAACACCTTCCATCTTCCAATATAAAAATCCCAGCATACACTCCCACTGTTCCCTGTTTACATAACTGTTCGAAATCCCATTTTCTAATGGATACGCTATACTGCTGTAGCTTACGTAACAACCAAAATTCCGGGCCAATCCGCTTCAGTTCCTCCAGTAAGGTTGCACCATCACCATAGCCGACCAAGATGGATACCGAGTCTTTATCGTCTATCAACCGGAACTTCTCTGCAGCAGTTGCAAACATAAAGTGCATTTCTGCAAAACCTTTATATAACAGACCTTTTATATTAGCCTTATCAAAGGTGTTACAAT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTTATATAGGTACGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.40,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 75555-73748 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRQP01000013.1 Parabacteroides merdae strain AF31-17 AF31-17.Scaf13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 75554 32 100.0 33 ................................ TGAAATTAACGATATTAACGAACACGTCAATCT 75489 32 100.0 34 ................................ TTATTTTGGCTTACAAGAACGGACAGTATGTTTA 75423 32 100.0 32 ................................ CTATCCAGGCGGTAGCAAGAAGAACGCATTTG 75359 32 100.0 35 ................................ TCGTCTTTTTTAAGTAACGTTAGCTGCTTACATAA 75292 32 100.0 33 ................................ CCCAATGGTGTAATTGTCTCTCCATTGACAATT 75227 32 100.0 34 ................................ TCGGAATTAAATGAATATGCGCATGAGGAACTTC 75161 32 100.0 34 ................................ ATTAATCTAAATCTAAAAATCGCTGGGCGGCTCA 75095 32 100.0 33 ................................ CTATAAATGAATATGGTTATGAAACACTTCGTA 75030 32 100.0 33 ................................ AACAGGATAAAATCGTTATAATTCCATCCGGCA 74965 32 100.0 34 ................................ ACGTCATTGAGATATTCGGACGTTGAGAATCTAA 74899 32 100.0 34 ................................ TTAATCGCGATAGCTGTTTCCAGATCCACAATCT 74833 32 100.0 34 ................................ GGAATATTGCACCACGAATGATAAAAATGATTTG 74767 32 100.0 34 ................................ ATATTTTCCATTTCGCGCACCTCGTTACGGGATA 74701 32 100.0 33 ................................ CGACTTGATCCTTACAAGTTGGAGGTAATCTAT 74636 32 100.0 33 ................................ ATTTTTATTGGTTTAGGGTACGCGCGTCCATTG 74571 32 100.0 33 ................................ AAGGTGCTGCTTATGCGAAGACTCTTGCCGAGA 74506 32 100.0 32 ................................ TTACTTTCGCCGTCGAGAACAGTATTTGAAAA 74442 32 100.0 34 ................................ TGTGACGAGGAGAGCATAGTAATGGGTATTATGT 74376 32 100.0 33 ................................ AAGGCGTCGTAACGAACATTAACATCAAAACGA 74311 32 100.0 34 ................................ TCCTTCTTACGCTCAAATTGAGCTTAATTGGCTT 74245 32 100.0 34 ................................ AACAGGATCAAAAGTATGATGACGCTCAGCGTAT 74179 32 100.0 34 ................................ ATGAAGTTGCAAATGTTACCTTAGCATTATAGAA 74113 32 100.0 34 ................................ TAATTCGAATCGTAATTATGGTGGATCAGCTAAA 74047 32 100.0 35 ................................ CCCGACCAAGCATGGACAGTCACCGGCAAAACCAA 73980 32 100.0 32 ................................ TTGTGCAGCAATGGCGCGCTTTTGGCGTCTAC 73916 32 100.0 34 ................................ ATTGCCCTCAAAAGGAATACAATAATCCCATAAT 73850 32 100.0 39 ................................ GTCCGTTTTAGAATACAACAGTAATAATGCAACTAATAA 73779 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 28 32 100.0 34 GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Left flank : TACTTCCAGGAGATCCCGTCTCCCCAGAGCCTGTGAAGTCATCCCACTCGTTCCCATCCGCAAGAAACCGAACAACCAGTAAATAATATTGAACAGCATCCCCCCTACCGCAATCGCCCCGATATAGGAAGCGGCCCCCAAATGTCCGACAATCGCCACATCGACCAATCCCAACAAAGGAACCGTTATATTGGATACAATAGAAGGAAGCGCTAACTGAAGTATCTTTTTATTCATTATTTATCGTATCTATAAAAACTATTCCTAACTTTGTCAGCAAAGTTACAGATTACTTTAGAAATAACATGATTACACTTATGTTTCAATAACAAAAACGCGAACCCTAAGTAATTGTAAAAAACGTTGGATGTTCGCATCCTCTATAAATCATACACTTATAGATTTATTTAGAGAATATGAACATTTATTGCTTTTCTACTTTATCATTCGCAAAATTACAATTTAAAAGTGTCATCAATAAAGCTTTTCACAAACATGGA # Right flank : CACTCTTCAAAGGCGCGTTTGAACGTGTCTTTAATGTCGCATCCTTTACGGGGACAACTATTTATAATATTTTTTGCAAGAAGATTACAGGATTAAAATATTTGTTTGTTAGAAAATAAAATATATCTTTGTTGAACAGAGTTATAAAGATACCTTATTACTCAAAGCATAAACACCTTATATTACGTTAACCTAAACATATGATATATACAAATAAAGAATACTGTCTTGAGGTTAAAGGAAGCATGGCCTGCTTTACCCGTCCGGAGATGAAAGTCGAAAGAGTTAGCTACGACATAATAACGCCATCTGCTGCCCGAGCTATTTTCGAATCTATATTTTGGAAACCAGCCATACAATGGAATATTACTCGAATAGAAGTATTAAATCCAATCAGATGGTTTTCCATGAAAAGAAATGAGATTGGAAGTTTAATGAGCCCCCGTTCATCCGGATTATTCATCGAAGATAATCGGCAACAAAAATCCAGTTTGTTACTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.50,-1.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //