Array 1 5280-776 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNPH01000008.1 Micromonospora pattaloongensis strain DSM 45245, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 5279 37 100.0 36 ..................................... TGGGTGTGAGGAGGTGCCCGTGGCTATCACCGAGCG 5206 37 100.0 37 ..................................... GGCCGGTGCCGGGCGATCAGCAGCTTCTCGGCGCAGG 5132 37 100.0 37 ..................................... TCCTTCGGGCCGGCCGGCGCGACGGGTGCATTCGATG 5058 37 100.0 36 ..................................... TCCGCCTCGCCGGCGGCCTTCCACACCCGGCGGAGC 4985 37 100.0 37 ..................................... GAGGTGTGGGACATGACCGACGTGCCCGTGGAGGAGT 4911 37 100.0 36 ..................................... CCGTCGTCGCGCTGCTCGACGGTCGCCGGCCAGAAC 4838 37 100.0 39 ..................................... GGGTCGCTCGCCGACGCGCAGGTCTACCAGACGACGGGT 4762 37 100.0 37 ..................................... ACGGCGCCCTACGTGGTGGTGGGCCGCCCGCCCGGCG 4688 37 97.3 39 ..............................C...... GGGTCGCTCGCCGACGCGCAGGTCTACCAGACGACGGGT 4612 37 97.3 37 .......T............................. ACGGCGCCCTACGTGGTGGTGGGCCGCCCGCCCGGCG 4538 37 100.0 39 ..................................... GGGTCGCTCGCCGACGCGCAGGTCTACCAGACGACGGGT 4462 37 97.3 37 .......T............................. ACGGCGCCCTACGTGGTGGTGGGCCGCCCGCCCGGCG 4388 37 100.0 36 ..................................... TTGAGAGGAACGGGGATGCCGACCTTGGACTGGTCG 4315 37 100.0 37 ..................................... CCCGGCCACGCAGACGGCGCTGCAGGTGCGCTACGTG 4241 37 100.0 37 ..................................... AAGTACGACGGCGGTATGGCCGACATGGTCGAGTTCA 4167 37 100.0 39 ..................................... TCTGACCTGGGGCTTTGGGGGTCACCCCCCACCCCCGTC 4091 37 100.0 37 ..................................... CACTTGCTGATCATCCAGTTGAGCGCGGAGCGGAATG 4017 37 100.0 37 ..................................... GCGCTGCGGTCGTACACCGACGGCGGGGAGCACTACG 3943 37 100.0 37 ..................................... ACCACCTCCGACAAGGCCACCGCGTCCACGCGGGCAG 3869 37 100.0 38 ..................................... GAGCGCTTGGCTGCCGAGGTCCGTACCGGCTCGCCAGA 3794 37 100.0 39 ..................................... CGCACCACCGACAAGGTGACCGGGGCGTGCGCCTGGCCG 3718 37 100.0 37 ..................................... CACCCACCGCACGAACCCGGCGCGGCTGGTGATCCCG 3644 37 100.0 35 ..................................... TGGCTCAGCCAGCACGATGTGTCCGTCCCGATGAC 3572 37 97.3 39 ..........................T.......... GATCGCGTCGGCCACCTGTCCGCCCAAGTGGTTGAGGGC 3496 37 100.0 35 ..................................... GTTTGGGTGTCAGGATGGCACCACCTCGTAATGGG 3424 37 100.0 39 ..................................... CACGCCTCCATCGCGTCGCGGTACGGGCGGCGCCACGAC 3348 37 100.0 38 ..................................... TCGTGCGGGTCCTGCGTGTCGGCCCACCACTCCGCGAC 3273 37 100.0 38 ..................................... TGCCGCGGCGTGACCCCCTGCGCCCGCCCGTTCCGCCA 3198 37 100.0 35 ..................................... ATCCCGCGGCTCGGCAACCGCGCCCGGTCCCGTGC 3126 37 100.0 38 ..................................... AAGAGTCTTGGGTGGAAGGAGGTTCGCGGCGGTCTCAA 3051 37 100.0 38 ..................................... CGCGAGAACGGCATCCCGGTCGCGGTGATCGACGGCGC 2976 37 100.0 37 ..................................... CCGGTGTCGTCGCGCATCGACCCGACCGTGCCGCCGG 2902 37 100.0 38 ..................................... GACTACGCGGAGCACTGGGACCAGACCCGGCCGTCCGC 2827 37 100.0 38 ..................................... GAGGGGGTGGGTCGGTTGATGCGCTGGTGCTCGGGCCA 2752 37 100.0 37 ..................................... CGCGGATTCAGCACCGTGACCAGCGGTTCGCCGTACG 2678 37 100.0 39 ..................................... TCCCCCTGGTCGACGGCCAGCCGAAGGGGACGCTGGTGT 2602 37 100.0 36 ..................................... GTCGAGTGGCTGATGGGCCTGCCCGCCGGCTGGGTC 2529 37 100.0 38 ..................................... CTGTTTCTAGATGAGACACTAACCCCGGTAGCCCGGTG 2454 37 100.0 37 ..................................... TACGAACCGGAAGTCTGGTGGTCTGTCACCCCCACCA 2380 37 100.0 36 ..................................... GACGGGATACTCGACGACCTGAATTCCGACCCCAAC 2307 37 100.0 36 ..................................... ACGCTGCACCCCCGCCGTACACCTCGTTGGCCGTCT 2234 37 100.0 38 ..................................... ACCCCGGAGCCCGGGTGGCTCGGGAAGACGGGGTCGGG 2159 37 100.0 39 ..................................... CAGGAGAAGACCCCGCCCTACCTCGTCACGGTCGTCGAG 2083 37 100.0 39 ..................................... TGAGAGGGGCCAGGGCATGGTCTTTCCCGAAACCGAGCT 2007 37 100.0 39 ..................................... GGCCTCGGCCTATTCGGCGCTCTCATCATCATTGCGGCA 1931 37 100.0 37 ..................................... CTCGCGGCCGGCGACGGGGTGGCTCATGGCGTTGGTC 1857 37 100.0 39 ..................................... CGCGATCTTGATCAGCGTGGCGAGTGCGGCCCGAATGTC 1781 37 100.0 37 ..................................... GTCCACAGCCAGTGCAAGACGACGCCGCGCAGCTCCG 1707 37 100.0 39 ..................................... GAGGTCGGTCCCACCCTGCTCGGCATGAACGCCGCCACC 1631 37 100.0 38 ..................................... TCGACCACGAACGCCTTGTACGGGCGGCCCCGCAGCTG 1556 37 100.0 35 ..................................... TCCGGGGTGCCCGGACCGCCACCGCTGGATCCGGC 1484 37 97.3 36 ......................A.............. TCCCACGTCATCGCCTTGTCGATGAACAGGTGGAAG 1411 37 100.0 36 ..................................... GAGTTGGTGATCGACAGTGACGCCGACGAGCACGAG 1338 37 100.0 38 ..................................... GACCGGTTGGGCGACGCCGCCGGTGACACCTTGACGAT 1263 37 100.0 35 ..................................... CGTGCAGCGAGGTGAGCGACCAGCAGCGCCTGCGG 1191 37 100.0 37 ..................................... ACTGGGCTGGCCAGCTCGGTGGTGGACGGTGTGTCGG 1117 37 100.0 41 ..................................... CCCGCTGTGGGAGGCCGCCGACGGGTCCGGATCCGACGCGG 1039 37 100.0 38 ..................................... CGCATTGGCCCGTGGTCCTTCGCCATGGTTCGCTACCG 964 37 100.0 39 ..................................... AGCCGCTTGATCGCCTCGTCCGTGACGGGGACGTCCTGG 888 37 100.0 38 ..................................... GCCAAGAGTGCGATGAACGGCGGCGAGGGCGGCACCAC 813 37 94.6 0 G.............................A...... | G [802] ========== ====== ====== ====== ===================================== ========================================= ================== 61 37 99.7 37 CCTGCGCCCGGCCATCGCGCCGGGCGAGGATCGCAAC # Left flank : GCTGCTGCCGCTCGTACAGGCCCGGCTGCTCGCACGTCACCTCCGCGGAGACCTGGTCGCATACCAACCCTGGACGGTGAACTAGTGGACTTACTCGTCACGTACGACGTCGAGACGGTCACGCCACGAGGGCAACGCCGACTGCGCAAGGTCGCCAAAACCTGTGAGGCGTACGGCCATCGCGTGCAACAGTCGGTGTTCGAGGTGGTCTGCCGCGAAACCGACAAGGTGCGCCTGGTCGCCGCGCTCCAAGAGGTCATCGACCCGGCCCAGGACACCATCAGGATCTACCGGCTGCCGGCCCACGCGCTCGACGACGTCGAACATCTCGGCAAACCACGGCTGATCGAACCACGCGGAGCGTTAGTGATCTAGGAACCCCAAGTGAACGCCAAAACCCGGGGGGTTCCGAGCCGAATGATGTGGAGGAACTGCGCAAATCGGACTGCGTGCGAGTCGAATATGCATCGTCAGATTGCCATTTTCGCTGCTCGCAAACG # Right flank : GACTACCCGCCACCGTCGTTCGTCTCGTGGGCCAACGGGTAACGGCACCCGGTCTCCGTGTCACTGTCACACGAGATTCGCATCGCGAAGCCGGTTGCTATTGTCCGATTGACGGCAGGTGCATGAAGGTTGACACAAGGTCGCCGGAACGAGTTGATCTATTCGGCACCAGCAAACCTCGCGGGCAAGGCACAGGTCATTGGGCACCGCCCGATGCCCGTGAGCTGGACATAGTCAGCGGTAGCGGATCGCCGGCGATGGTCGCCGGTTGGTTCGCGTGGTGGTACCTCCGGCCCACCAGCCGTTTTCCTCGTCAGAGCTTTTTCGGCTGCCCAGGCGGACCGCGTCAAGGTCTGGACCAAGGCTCTCAGTCCGCATTGAGTCCGCAGCACGACCATCCGCCCGGTCGAGGCGGTCCGCCACCTGGTCCAGGTCGTCTTCCAAGAGGTCCGCGTACACGTCCAGCGTCATCGCCGCCGCGGCGTGCCCGAGCATCCGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTGCGCCCGGCCATCGCGCCGGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCTGCGCCCGGCCCTCGCGCCGGGCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-17.20,-16.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //