Array 1 286714-285425 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADIHK010000003.1 Escherichia coli strain PBIO842, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 286713 28 100.0 32 ............................ AGTTGGAGTATGCGCGTGGGCTTAAAGATCGC 286653 28 100.0 32 ............................ AGCAAAAACCGGATATAGACAATCTCACTAAA 286593 28 100.0 32 ............................ GCGCACGGCGTGGCGACAGAGAGCACGCCCGC 286533 28 100.0 32 ............................ ACAGAACAGGCGAAAGAAAGGGTACGCAGTAA 286473 28 100.0 33 ............................ TGGATTCCAAACCGCCCACCAACAAAAACAGGT 286412 28 100.0 32 ............................ GATACGATCGAATTTAGTCACTGAATACCCCC 286352 28 100.0 32 ............................ GCGCGCAGTGCCTGATAATCAATTTTGCTCAT 286292 28 100.0 32 ............................ TGTACGGCAGTCTATTAGCTATAGGAGCCTGA 286232 28 100.0 32 ............................ AGCGTTCGGTGAATATTTTCCGCCCGAGTCCA 286172 28 100.0 32 ............................ TGGGGATATGCGCGGGATTTGGCGGTGGTTTA 286112 28 100.0 32 ............................ GTAGAAGCTCACCATCAGCGCGTCTTTTTTGA 286052 28 100.0 32 ............................ ACATTTCCGCCGTTATGAATCGGTATTCCATA 285992 28 100.0 32 ............................ AATTCGTGCTGGCGCGGGTCGTGGCATCACGT 285932 28 100.0 32 ............................ TGACGTCGCGTGAATATGACGCCGTTGTTTTT 285872 28 100.0 32 ............................ TCATTCTGTACAGAAAGATCAACCATAATATT 285812 28 100.0 32 ............................ CGGGGAATGACACGCCGTTAATAGTGGAACTT 285752 28 100.0 32 ............................ GCTTGGGGAGTATTGGGAATCGCTCGGCGGGA 285692 28 100.0 32 ............................ ATGAAAAGCGCCGCCTTTATGCGCCCGATTTT 285632 28 100.0 32 ............................ GTAAACGGAATTAGCAGCAGCATGATCAAAGA 285572 28 100.0 32 ............................ CTGGAGGCGCTCACACTCACGCGGAGTGAGAC 285512 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 285452 27 92.9 0 .......................C-... | T [285433] ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCCTTTTTTGTGTAGGCCATGTCTGGCGCAAAAAAAAGCCCGTACTTTCGTACGAGCTCCTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAATACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 296340-295770 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADIHK010000003.1 Escherichia coli strain PBIO842, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 296339 28 100.0 32 ............................ CGTGCGTATGCTGCCGCGCGATTCAGTACATC 296279 28 100.0 32 ............................ CGGCGCAGTGGTTTCCATTGGTGGGAAAAATG 296219 28 100.0 32 ............................ GCATCACGTGTGGTGACTGAATACGCGGTCAA 296159 28 100.0 32 ............................ AGAAGGGCGGGCGTCGTGTTGTTAAGCGCGAA 296099 28 100.0 32 ............................ AGCGGTCGCCAAGGCAATGCTCGTACGCCGTC 296039 28 100.0 32 ............................ ACATCGACCGGGCCTGACCTCCTGCCTCCACC 295979 28 100.0 32 ............................ TGGATTACCGAGGCCCGAAAATATATTGGTGA 295919 28 100.0 32 ............................ AAAAAGTTGCGTCGCGTGACCGGCACTATAGA 295859 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 295799 28 85.7 0 ....................T...C.CT | C,A [295773,295776] ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //