Array 1 833-560 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIEUH010000068.1 Lactobacillus crispatus strain UBLCp-01 NODE_68_length_8605_cov_96.549601, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 832 29 100.0 32 ............................. TGTCGATACTGAAAATTATTTTGACGAGGTCG 771 29 96.6 32 ............................C AAGTCAAAAGTACGCAAACAGCAACCCTAATT 710 29 89.7 32 ............TA..............C TTGTTGACGCTCCCACATCAAATGCAAAATCA 649 29 93.1 32 ............TA............... GAGCCTTCCTGACGGCTGACTACGTGACACTA 588 29 79.3 0 ............T.A........T.AGT. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 91.7 32 GTATTCTCCACGAGTGTGGAGGTGATCCT # Left flank : CGGTTTACACCCAACACCAGAAGATGCAAGTAATGATTGTTACTCAGCACCCACAGCATATTATCGATGGAATTCAGAATCGAATGCATCGTGGAATCACTATTTTGCACGATGCTGAAGGTGCATATAGTCATATTGAAAAGACAGTTTTGATTACCATTATTGATCGATATGATATGTATGATATTCGCCAAATCGTGCAAGGAGCAGATCCGTATGCTTTCATGAGTGTTAGTGAAGTTGAAAAAGTATATGGTCGCTTCAAGGAGCAAGAAATCGTTTAATGGATAGCCCTTAAACCTTGATATATAAGGATTTATAAATGAAATTTGAATCCTAGGGGCACTTTGGGAGCAAAACTATTCAAAAAGAAGCAGAAATGCTTCTTTTTTATTTGGAGTGGCTTTTTGTAATTATGGCTTTATTATTGGTCTTTGTTAAAAGTGATTAAAAATGATATTATTTCGATTGAGAGATGTTGATATATCGTGGATCATTTA # Right flank : ATATGGAGAAAGATATGTTTACAAAGCAAGAATTTAAGCCGCAGGGTTATAAGGAAAATGTCGAAAGGCTTAAACTTTTTTATCACAGTGAATTTTATCAAGACTTGAAAAAGTTATATCCTAATTATTTGAATAAAGTTGAAGATGCTTTATATCAAGATCCGGATTCTAGTGATGAATTTCTTTATATTGCATTAAGTGAAAAATATAAACTCGATGTTTCTAAGAAAAATAACTCTTTTTGTCTTATTGATAAGGTGGGAAACAGTGAAATTGCATTAGGTGCGGATGCTATTTGCGGAGTAAAATGTTTAGCTAAATACTATCCTGATCTCGATGACTGGATCGATGCTTATGAAACAATACGAAGTCAAACATCCCTGCATTTTGTATGGCCAAGACATAAATTACCAGCGATCAATACTCTTAGATACATTAAATATTTGGACCGTATTGATTTTACTTTATTTGATTTAAAAAATTATTTTCCCGGATTTAAA # Questionable array : NO Score: 3.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGAGTGTGGAGGTGATCCT # Alternate repeat : GTATTCTCCACGAGTGTGGAGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3566-4024 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIEUH010000009.1 Lactobacillus crispatus strain UBLCp-01 NODE_9_length_51698_cov_93.168323, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3566 29 100.0 32 ............................. AGTTGCCCTGATACCGAACGGGATCCGTACCG 3627 29 100.0 32 ............................. CAAAATCAACTAAAACGACCGTAGAATCGCTC 3688 29 100.0 32 ............................. ATTAGTGTCTCTGCCGGCATTTTCACGATGAT 3749 29 96.6 33 ............................A CTATCTTTAGGAACATAACCTCGCTTGATCATG 3811 29 100.0 32 ............................. AGTTGCCCTGATACCGAACGGGATCCGTACCG 3872 29 96.6 33 ............................C CCCCTAATATCATCTTTTTTAATTGAAAACCAA 3934 29 100.0 32 ............................. ATGCAGAGTGGCGTGCATGTCATGATTACAGG 3995 29 86.2 0 .............A...........AA.A | C [4017] ========== ====== ====== ====== ============================= ================================= ================== 8 29 97.4 32 GTATTCTCCACGTGTGTGGAGGTGATCCT # Left flank : TTCGTGAACAAATTCTGCGACTGACTTCACAAGAAGTACCACATGCTACTGCTGTCGCAGTTGATCATATGAATACTCATCAAAATGGCAAGCTCTTGATTGAAGCGACTATCTATGTTGAGAAAGACGGTCAAAAAGGCATTATTATTGGTAAGGGCGGTAAGATGCTCAAGCAGATTGGGATTAATTCACGTCAAGAGATTGAAAGATTGCTTGGTGAAAAGGTCAACTTGCGTCTTTGGGTTAAGGTCCAACATAACTGGCGTTCTGACCCTAACTTTTTAAAGCGAATAGGCTATGACAAAAAAGAACTTTAGTTGAATTACTGTTGTATAAGCGTTGTCGAAAGATGACGTCTTTTTTGTATGTTTAGGGAGACAAGAAAATTCTATTCGTTGGATGACTAATGAGACAGAAATAGATACAATAGTAATTGACAAAGTGATGAAATTTGGGGATCTATTGTTTTGTGATTGTTGTTATATTGGGATTTGTTTACC # Right flank : AGCAGTCTTTTTGTACTATAGACTATTTATGATATTATGATATCTTCATCAGAATATCTATAAAAAATTAATTTTAAATACTAAAGGAGTCATAATATGGCACGTGAACTAAAACAAGTTCAGGGTATTATCTTTAAAAGGCAGAAATATAAAGAAGCAGATTTATTAGCCAAAATTATGACTAAACAAGATGGAATTATGACTCTGATTGTTAAAGGAGCCCTGAGGCCTAAATCACGATTAAGTGCAGCAACATTAAATTTTTCTATTGGTACTTACGTAATTTATACGAGCGGAAAGGGCTTAAGTAATTTACGCACATATAAAGAGGCAAGGCAGTTTGATGGCTTATATAATGATTTAACCAAGAACGCTTATATTTCTTTTATTTTTGATTTAATTGATCACGCCTTTGTAGAATATCAGCCAATTGGTAAATATTATGATTTAGCTTTATTCGCTTTGAAAAAAATAGATAATGGCGTTGATGCAGAAATGAT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 31504-31648 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIEUH010000020.1 Lactobacillus crispatus strain UBLCp-01 NODE_20_length_32141_cov_98.250873, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ====================================== ================== 31504 23 100.0 38 ....................... AGAATTAGACCAGCGTTTATAAGTCCATATTAGGATCA 31565 23 100.0 38 ....................... TAAGATCATTAAAGGCATTCTGCCACTGTTGAGGATCA 31626 23 95.7 0 ......................A | ========== ====== ====== ====== ======================= ====================================== ================== 3 23 98.6 38 CCTCCACATGTGTGGAGAATACT # Left flank : GTGAACTTTGATTTGTGGTTTTTTCTTTTGCACTTTGCAATTGGGCTTTCGGCATATTTGTCACCTCTTAGCTCCGATTCTCTTAGCCTCCTTTCACTATATACAACACACGCTTTTACGTGTAACGCGAATGATATTTAGAAAAATATGCCAAAAAGGCATCAATCTGGCCGTCTAAAGCCAAATGATGCTTTAATTGTTTTTTCACCAAAATCAATAGCCTAACTTAATGACACTGTTTTTACATAAACTTATTAAATTTATAATTCTTCATATTTTTTGCTCTTTAACTAATTTGTTATCAAAATTGAATACAACGATTAGTAGCTAAGTCCTTCTTACGATTACCAGATTACCAATTCATCTCGATTCTATTTTAGATTTCTTAGCATCTTTTCACTATATAAGTGAACGCAATCTCCGTGCACCATCAACAATATTTTTAAATAATATACAAAAACAGTCACTCTATAGAACATATTTTCAGAGCAGCTATTTAG # Right flank : CTAAATGAATCCCGCTACAGCAACAATCCCTACCTAAAATCATAGCATTTTTTATTGCTTTTAACACAAAGTGTTTCTTTAATATCTATCGATATAAAAAAGAACCTACACAAAGTGCTTGCAAATTATTTCAGCCTGGTCATTCATTAAATTATATTGTCTTTTACTAAAGAAATCAGGGAGTTAGCATATATAGGCATAGAATTAGATGATTCTGATTTTGCAAGAAATTTTTTAATGATTTCATTTTGCCGACTAGCAATATTCAAAACGTTATATTTTTTATCAACAAAACGTCCTAATTGCATCTTTTTTACAAAGGATGGAAAATCATAAAATTGAGATAACCATAGATTAGTCACTTCATTTTTATAAGCTCTAGCAAGCGGCGTGTTTTCATTACCTTCAAAATAATTTTTTCCTGAATTGTCAAATTAAGTGCAACAGTTAGGCTATGAGGAAATATATTGCTTGAAGAGTTCTTCTGCTGTGT # Questionable array : NO Score: 5.29 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTCCACATGTGTGGAGAATACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //