Array 1 10378-9958 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARXO010000008.1 Listeria innocua strain FSL L7-0317 NODE_8_length_86131_cov_95.599995, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 10377 29 100.0 36 ............................. TTTGTTTTAGTAAGCATATCTCGAATAAATTCAAGT 10312 29 100.0 35 ............................. ATTCTTTTTCAAAGCTACTTATATACTTGCCTTCC 10248 29 100.0 38 ............................. GACAATTTAGCAGAAAAATTAAGTGTTAAAGCAGTTAA 10181 29 96.6 37 ................C............ TCGTTAAAAGTGTCATGGTTAAGCTTCTGCATTAACA 10115 29 100.0 36 ............................. TTTGCAATGTAAATCTGATCTGCTTCTGCAGTTAGT 10050 29 96.6 36 ..................A.......... AAAGTTACGGCTAAATACATGCCTAAGCTTCTTGTT 9985 28 75.9 0 ............CT.CA......A-...G | ========== ====== ====== ====== ============================= ====================================== ================== 7 29 95.6 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GGTGTACGTGCCACAACCTCAGCTGACATTTTACTTGAAAAAGGGGCAGTAGAAGTAATCGCGTGCGCAACCCATTCAGTCATGGCTGGAGACGCGACTGAACGCTTGCAAAACTCAAGAATCAAAGAAGTCATTACATCCGACTCTATCGACCTTCCAGAAGAAAAACAATTCGAAAAACTAACAACGATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTCCAAGAAAACCGTTCATTGCATCCGTTATTTTAAGATATAAGCAGAAAACAGCAACTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCAACGTTAAGTAGCGTGAAAAACACCGGAGACCGACAGAAATTTGTGAATGCTTGGAGGAAGCGGAGTTTGGAGATATTTGCTTTGAAAAAGTATGCTGGCAAAAGTAGATTTTATCTGATTTGGAACAAGTCGACAGAAACAGCCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGCGCACGG # Right flank : CCCAATATATAATCTTTGCTCACATTTTAAAATTACATTTTCAATTTATATCCATTAAAATATTGCTTTTACCAGCTCTCTCAAAAACTCAAACATAATCTGGAGGACATCAACATGAAAAAAGTTCTAATGCCACTTATGCTTCTCGCAGTTTTATTCTATGGGTGTTCATTACAAAACGAAGGAGTAACGAAAGAAACTGCCATTTCGAAGACGATTTCTATACGGGCGGACTACGCTATTCCAGCAAATTTGGATGAACTAGCAGCGAACAGTGATTCGATTGTTAAAGTGAAATTTCTACAGAATAAAGACATCGGTAAAAATGGAAATACGATTAGTGAAGTAGAGATTTTGAAAAACTATAAAGGTAATTTTAAAAAAGGCGAAAAAGTAGATATTTCGGAACCGTGGTATTTAAGTAATGATAAATATGTCGCGGTTGAAAACTATATTGCACTTGAAAAAAATGAAGAATATACCTTGTTTCTAAACGAGGG # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 469598-470290 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARXO010000002.1 Listeria innocua strain FSL L7-0317 NODE_2_length_475666_cov_106.177044, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 469598 36 100.0 30 .................................... TTTAACCATTTCTGGATCTGCGTGAGAGAA 469664 36 100.0 30 .................................... TCTAAATCTAGTTCGATTTCTTCGGTTAGT 469730 36 100.0 30 .................................... AACGGACAACATGTTAACAATATCGTTTAG 469796 36 100.0 28 .................................... CGCCCTTCCGTCACAGCTGCAAAAAATT 469860 36 97.2 30 .............................G...... CTTCTCTCTTTTGTATTGCCTTTCTTCGTA 469926 36 97.2 30 .............................G...... ACGGGCAACTACATGTTGCACTGATATTCA 469992 36 100.0 30 .................................... ACAAAATAACAAAGTGAAGGATGATAGAAA 470058 36 100.0 30 .................................... TTAAGAACTTTACCAGATAACAAAAAACTA 470124 36 100.0 30 .................................... GGGAAAAGTTAGTGTTAAACGAACGACTGT 470190 36 100.0 30 .................................... ACAAGTGGAAACATTAGTATCTATGCAATA 470256 35 86.1 0 ..............C.....C....A....-...C. | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 98.2 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TTGATAAGCTGACCGCGACGATTAGCGAGTTGATTGGTTACGAGCTTCTGGAACATGAACTGGATTTAGAGGAAGATGAAATTACAGTTATTGAATTATTCAAAGCTTTGGGTATCAAGATAGAGACAAAAAGTGATACCGTTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAATGTATGTGCCTATTTAACAGAAGATGAGTTACTAGAGCTAAGGCGCTATATCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTCGAAAAACAGAAGGGTTTTCGCAGGTTATCCTAGATTCAGATTATTTTTTACAAGTTGAGAAAGGAATGTAGAGTTCAAATGATCTTTGAAAACTAAATAGATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGAAATCTAGGAGAATAAAAAATTCTACGAG # Right flank : CACATCTCTTAATCTACTCCAGCTAGAAAAAGTTACACCATTATGAAAGAGAGGCCCCAACAAATGACACAATACCACTACCTCGCCTCAAAAGCAGCACTAAAAACTACGACACACGAAAATAAGACAGATTTTATATATCAAAACGACTTAGACTTCCTGAGTTTGAACTTTGAAGAAAACGTTGATGAGCGTACAAATGAAAAATTTTCCTACTCCAAACATTTTAACCCAACTTGCAATTTTCAAGTCGCTATAAGTGAAGGGAAATTACCGTTAAAAGGTGAAGAGCAAAATAATGATTATGAATCTAAAAGTTTAAAAATACTACACGATTACATTATAAAAGCTAGTAAAGAAAGCGATACTCTTGAACTATACACTTCATGGAACGGCGAAGAAAATTTACCTTTGACGAATAAAACAGAATTAACCATAGAAAATTTAACCCCAGAAAATTTGATTTTAAGAGACAGAGAACTATTAATAATTAAAAATAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAGCAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //