Array 1 1185562-1185167 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047409.1 Lactobacillus johnsonii strain 3DG chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1185561 28 100.0 33 ............................ TCCATTAAAACGTATCATTATTCCAAAGAAGAC 1185500 28 100.0 33 ............................ CTGTTTTTAGAAGTCCATGTTCCTTACCTGTTT 1185439 28 100.0 33 ............................ TGTTGACTTAACTAAACCAAAAGTTCCAACACA 1185378 28 100.0 33 ............................ CATTTTCTTGTATTTAACTTTTTTAACTAGTAA 1185317 28 100.0 34 ............................ CAATGATCAATATCAGCAGATGTTGGACGTTCTT 1185255 28 96.4 33 ..............A............. TGAAGTAATAGGTTTAAGACAGGGTGAAAATAA 1185194 28 89.3 0 ..A..................G.A.... | ========== ====== ====== ====== ============================ ================================== ================== 7 28 98.0 33 GTGTTCTCCACGTATGTGGAGATGATCC # Left flank : TGAAAAATGGAAAAGTTGATGTATTTTATAAATTAATTAGGGATGTAAACTGTATTCCGGCTGGTGTAAGTGAATTAACTGGTTTGAATATGAAGATATTAAAATCAAAGGGAAGCAATTTAATTGAAGTTTTAAAAATGCTGAAAGACTTTCTGGGTGATCGAATTTTATTAGGTTACAATTTAACATTTGATATTAGTTTTTTGGATATAGCCTATAAAAGAAATAATATTTCTGGGTTAATTAATACTTCTAAAGATTTACTTCCGATAATTAAAAAGAATAATAAATTTCTTGATAATTATAAGTTGAGTACAGTATTGTCTGAATATAAAATTGAAAATCAAAATCCACATCATGCAGATTCTGATGCAAAAAGTACGTATCAATTGGCCTTGAAGTTGATTAATGAGGGAAAATTAAAGCTTTAAAGTTTGATAAAAGTAATGTATTTGGACCATTACATCTTTTTAAAATGTTGCTACGATAGGATTCTTTTA # Right flank : CATGAAAAGTGGTGTTGGCAAAATTAATAACTCGTATTCTCCAGTAAATAAAAAATGCCACATCATTCAAAACATACTATATCTATACAATCCTACGTCAATTAATTGAATGACTTGATAGCTCATATTAGTTGATTTATATAAAAATATCAAGAGAGAAAAAATGTGACACCATCAATTGACTAAAGGCCAATAGGATTTGCTACAATAATGAAAGGACAAGTGAACGTAGTTTATTATAGAGAAGAACAATGGGGCTATGCTAAAAAAGCGACTCACGAGTCTACTATGAAGGTAGGAGATAGTTAGGTGGACGCGCATAGATGTCAGATAGGTGTGGGTGCAAATCTCGCCTTGCTTGTCTTAAAGAAAACGATACTCAAACGAGTGTCGTTTTTATTTTGATATTTTTTCTCGAGGATAGGACTTAAATATTTAATAAAGATAATCCAGATTATCATCCCATAACTAAATACACTAACTCTACTTGTTATGAAATC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCTCCACGTATGTGGAGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 1196519-1195508 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047409.1 Lactobacillus johnsonii strain 3DG chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1196518 29 100.0 32 ............................. ATAGTCTGTTTGGCTGTTCTTCCATACTCCAT 1196457 29 100.0 32 ............................. CATGTTCTCAGCGGCTTTTTCAAGAGTATCAA 1196396 29 100.0 32 ............................. TATTTTCGTGAGCTTTCAGGTCTACACTCGGT 1196335 29 100.0 32 ............................. CTTGAGCAAGCTAAGATTGCTCAACAAGAAAA 1196274 29 100.0 32 ............................. TTAGGCTTAAGTAAAAGAACATCATCATAACT 1196213 29 100.0 32 ............................. CAATTGCAATTTCAGGAAGATCAATGGTAGAA 1196152 29 100.0 32 ............................. TAATCCATCACAAACTGGAGCACGTCCATTAA 1196091 29 96.6 32 ............................C GTCCACCAGGAACGGTTACTAAGTTCGTCACT 1196030 29 96.6 32 ..............A.............. TACATCTTCTTTTGGCTTAGCAGCAAAAAATC 1195969 29 96.6 32 ............................C TTACAAGCCTGAAACATGGGTTAAATCCAATC 1195908 29 100.0 32 ............................. CATTTGTCAAGGCATCAGGAGTTCTTTCTTCT 1195847 29 100.0 33 ............................. GATAGCGCCTATAATCGTTACTCATTACTTATG 1195785 29 89.7 32 ..G.........C........A....... ATACCTTGTCATACCGTATGTTTGCGTTTTAT 1195724 29 86.2 32 ..G...........A......A.T..... GGTCAAGGGGATCAACAATCATCAATTACTCA 1195663 29 82.8 32 A.G........A.........A.A..... AAAGATGACTTTGAAGTTATGAAGAATGCACT 1195602 29 89.7 37 ..G...........A............T. TCATGGCCGCTCATTAATAGCAATTGTTCTAAGTGTT 1195536 29 79.3 0 C.G.......G..........A.A..G.. | ========== ====== ====== ====== ============================= ===================================== ================== 17 29 95.1 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : ATCAAATTCTTTGCCTTATTTTTGATTATTGTAGGTGGAATTATTTCTATTATTGGAATTCCTATAGCAAAGTTGCTATTTTTACTAGTATCACGTCAGAGAGAGTATTTGGCAGATATTGGTTCAGTTGATTTGACACGTGAACCAAGTGGCTTAATTTCTGCTCTGTCTAAACTTGAAAAACTAGAAGAAGGAGAGAGTACCCCGCAAATTGGCTCTCAAGATTTAGCCCTACAACATTTGTATTTTAATTTTCCGAGTGCTCATAATTGGATTAGCCGCCTTTTCTCCGATCATCCACCTTTGGATAAAAGAATTGAACGCCTAGAAAATAGTAATCGGATAAAATAAGATAAGCACGACCAAATATCATGAGATGGTATTTGGTCTTTTTGCTGGGGTCAAATGTAGGTTAAACACTTGATTCTTAGTTGATAGAAACTAATTGAAAATGATATTATTTGAATTAGAGAATGGCATCATATCAAGGATCTTTTAGT # Right flank : ATTCCTGCTAACTTGACTGATGAAGTAGCCAAGTGTTTTTCACATAAGAGGATATAACCTACGATAGTGGCAAAAATAATTTATATTTGAGTGCTTTTTATCAAAATGGCGCAATAAGTAGTGCACGATAATTCTGAATTTAAAAAATTGTATAGTGCACAATCAAACCTTTAATCTCTGTTCCAAAAATAAAGTTGAATCTAATTCAGCAAAGGTAAAAGTTTTATCTCATTCATTAAGCGCTCTAGTAGCGCTTTTTGTTTTGCGATGGACTTATCACTACTGATGGATAATCTAAAAAATTAATAATGGAGTATAATTAGAAAAGGTGTTCTTCACAGAAGTGAAGGTGATCCGAATATAGTGTATAGTTCGGAAAGTATTCTCCACAACTGTGGAGTTTTAAGAAAAATAAATAATAATATAGTGTAAAGTAAGCTAACTGTGATATAATGAAAGCGAATTCAAAAAGGAGATGGAAATTAATGGTGAACTTATTT # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1197755-1198089 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047409.1 Lactobacillus johnsonii strain 3DG chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 1197755 30 96.7 31 T............................. ATGCCCAGCCCGGTTTGTAGCCATGCAGTTT 1197816 30 100.0 31 .............................. GGAAATCTGAACATTGATATTGATTCGGGAA 1197877 30 100.0 31 .............................. CACTGTCTGGCTCTTTCAATTTCAATCCGAC 1197938 30 100.0 31 .............................. TCTAGACGAACATTTAAACGACGACGGTAGC 1197999 30 93.3 31 G.....................G....... TTAGCTAGTTTTATGGGTGGCTTATTCATGC 1198060 30 70.0 0 G...........A.TC......GCA..A.A | ========== ====== ====== ====== ============================== =============================== ================== 6 30 93.3 31 ACTATTCTCCACGGATGTGGAGATGATCCT # Left flank : CGGTAGCAAAAGCATTCGGCGCCTGATCAGGAGTAATATATAATTTTGGAACTGGCAGCCCACCTGCTAAACAGAGTTCTTCAACTAATTCATAAATTTGGGGCTCTGTTTCTTTAGTAATTTCAACAGCATTTGTTACTTTCATAAGATGGCGAGTTGCATCAAAATAGACGTGTGCAATGTAAATTAAACCTATAACAAAGAAAGCTCCTCCAACATAAACTGTAAAAAGCATTCCCAGAAAAATACTTATTATTAGTATCAACAAGGTGTATAGACCTAAAATAATCCAAGTATTTCGTTTATTCTGTTCAATTTGTTTATAAAGCATTATATTCACTCCAAGTACTATTCAGAATCATTTTACCTCTTTTAAAAACAAGTTAACAGCCAAATTTATTCTTATTATTTATAGGTATTTTAAGGTTAAGAGTTATTAAAACTCATTAAAAATGTTAGTATTTATTTTGGGATTTATTATTACATTGGGATTTTCTTAG # Right flank : AAAATCTAACTAAGTACATTAATATTTTCCCATAATTATCCATATTAAAAAAATAGTCCCTTGAACAAAAGGACTATCTTTTTATCTATAAATACTAACTTGCCAAATAAACCTTAATTACTAATTCCAAATTTTTACCATCCCAATGGAAAGTTTTTACACGACCAAATAAAAGATTTCCTGCATCAATTAAGCGACTAAATATCAAATTATGTTCGTGTGGAACATAGCCCAGTTTCAGGCCAGAAGGTGTAGTAACAGAAATTGCATTCTTATCGTATTTATTATCTGCTTCACGCATTAGTAAAACTGGGTCGTTTTCCTTTAAGCGAGGAACTATCCTATCTTCTAAATGCAAATAGTCCGAACCACGTACCTCACATCCATATAGAAATGTACTATGACTTTCTCCAGATTGTTTATAGTATATCTTTTTTAATTCAGTCATTTGATTTTCCAAATTACTAATTCGATCCATCAAATCTGTAATTAAAATATCA # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTATTCTCCACGGATGTGGAGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-10.50,-10.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 4 1199446-1199109 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047409.1 Lactobacillus johnsonii strain 3DG chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1199445 29 100.0 32 ............................. TAAACGAGGGAGATAGATTTGATGAATCTCTG 1199384 29 96.6 33 ............................C AATGGCTTAGCTACCCTCTCATTCGCATTGTAG 1199322 29 100.0 32 ............................. CAATAGTACCTTTTAGCTTTTTGACTTTACTC 1199261 29 100.0 32 ............................. GAATTGATGAATGCACGAGAACGCAAATAATT 1199200 29 100.0 32 ............................. GCTGTACACATGGTACCTAGCGTAAGTATTTC 1199139 29 86.2 0 G.A...........T.............C | C,C [1199112,1199114] ========== ====== ====== ====== ============================= ================================= ================== 6 29 97.1 32 ATGTTCTCCACGTAGGTGGAGATGATCCT # Left flank : CGACTTTTGATGTAGATTACTTTTTGCATAGATTAGAGAAAAAAGGGATTATTAATGCACAAGTCATCTTAGATATTCGGAACGGCCAAGAAGATACCCCAGATATAAGAGTGGCTTCAGGAGACGCCTTAAAGAATATACTTAAAACTCATTTGCTTGGAAGATAATTAATTATTTTTAAGGGAGTAAATTTATTTGTCCGTGATTCACTAGCAATGGTTGATAAGGATGCAAAGAATAGAAAATGAAACTTAGGATATTTTGTACAGTATAATTACATAATATTGATTATTTGCGATTTGAAAATTAAATATAATTAAAAGGTGTACTGCCTTTATTAATTGAAGCAGTAATCACTTGCGTTAAAACCATGAACAAAAAAATATATAAATGATTTTTGAAATCATTATTTTTTAATAAGCCTTTATGAATTTAGTAAAACTAATGAAAAATTGTCGTATTATAAACTATGAATGTGATAGGAACAAAGAATATTTAGT # Right flank : TTTGATGTATATTTCCAAACTTTTCGAATTCTTTTCTTTTCATTGTGCTATGCTTTCATAAGGCTTATACAATCTCATCTCTCATCGAAAATACATAGAAATAGTTTGTTTAAAGACCTACGTAGGTCGATATTTAATTATTACTTGTATTCTTACTAAAAAATGGTGTATCTATTTTATTTTCATTTAATCGCTCAATGATATAATTAGCATAAATTATCTTTTGTTCGTTTGTAGCATTACTTTTCAATATTGGCAACGGTGCATAATCAACATACACTAACACACCCTCCAGTTCTTTAGGTGTTAATATCATGAGCGAAAACCTTCTTTAGTTTAATATTTCTATCTTTTTACCACAGGCTTTCGAGCAAGCTGCTGCGGAATTTGAAAAATCAAATAATACTTTATCATAAGATCATTGAGGTAAACAGTCTACTAGAGTTTCCGACGAACGGACAAAATAAGCCTAAAATTATTCAATAGAAAGAGTAAATGTA # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCTCCACGTAGGTGGAGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.10,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //