Array 1 120483-118014 **** Predicted by CRISPRDetect 2.4 *** >NZ_FCOJ02000012.1 Caballeronia glebae isolate LMG 29325, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 120482 28 100.0 33 ............................ CTGCATCGGCTGTGTAAAAGGCGGCATGGGGTA 120421 28 100.0 33 ............................ CGTGAACGTGCTCTCGATATTGGTAGGCGGCGA 120360 28 100.0 33 ............................ TCGGTGGCGAAATGATCTCGAAACTCTTTGGGG 120299 28 100.0 33 ............................ CGACGAGGCGCGCATCGATGCGATCAAATCCAT 120238 28 100.0 34 ............................ CGCGCGCGTCAAACGGCATCAACAACCTTTTCGG 120176 28 100.0 34 ............................ CCGCACTGAGTCGCTCTATATCAACAATCGGACG 120114 28 100.0 33 ............................ CCAGCTGCCCGTCTTAGAGGCGCACTGGCGCAC 120053 28 100.0 33 ............................ CTCGGACGAGAGTCCGCCGAGTTTCGAGTCTCG 119992 28 100.0 33 ............................ CGGCGTGAGCGGCGGCGGCATGTTCGCGTTCTC 119931 28 100.0 33 ............................ GGAGGGTTCTAGATGGCTCTCGATCCACGCATC 119870 28 100.0 33 ............................ CGTGTGCGACGACGATCAAGCGGTCAAAACGCA 119809 28 100.0 33 ............................ GTGACCAGAGGAGAAAAAATGTTCAGTGTGTCA 119748 28 100.0 33 ............................ CGAGGACGAACTCGATGCGCGCTCGCTATTCGT 119687 28 96.4 33 ........................T... TCGAAAATCTCCATGAACAAATCCCCGCCGTCG 119626 28 100.0 33 ............................ GTATGACGATCGACTACAGCACGCTGCTCGGCC 119565 28 100.0 33 ............................ CGCGCCCGCGATGCTTTTGGACGCCATCGCGCG 119504 28 100.0 33 ............................ GTACGCTGACAAGTACGAACTGCTGTTCGTATT 119443 28 96.4 33 ......................C..... TTCTGGCTATTGCCGAAAAGCATCACGCATTGC 119382 28 100.0 33 ............................ CCAGTAGACCGCGCAAAAACGCTTAAAGCCTTA 119321 28 100.0 33 ............................ CCACTCGCCCGCGTAGCAACTTTTGAAGGTGGC 119260 28 100.0 33 ............................ CACCCGATCGCGCGCATAGCCAAGCCGCTGGTA 119199 28 100.0 33 ............................ GTAGCGGGACGAACACCCGTGGAGTTTGAATTT 119138 28 100.0 33 ............................ CCTTGCTCATCTGATTTCCTCGAGCTCGTACGC 119077 28 100.0 33 ............................ CGCGCCCGATTCGACCCGGCGGCAGTCATTACG 119016 28 100.0 33 ............................ TCCAACGGTCGAAGTGCTGGAGCAAATCGCACG 118955 28 100.0 33 ............................ GCCATCGGTAGTAAGAAGCGAACTGCGCAGCCT 118894 28 96.4 33 ....................C....... CAATAGCCTCGCTGCGGCCCGACAAGAGCGCGA 118833 28 96.4 33 .......................G.... CTGCGAGCCGCGATCAATGCCGAATTTGGCGTC 118772 28 100.0 33 ............................ CTTATTCGGCCTCGCTGCCGCTTTCTTTTGATG 118711 28 100.0 33 ............................ GTTTCTCGCGATCATTCCTGCGTGGAACCGCGC 118650 28 100.0 33 ............................ TCTGCTGAATGTGTGCGCATTGTTGAATATTTC 118589 28 96.4 33 .....................T...... GCAGGCTGCGTTTGGTGAAATGTTCACAGAATT 118528 28 100.0 33 ............................ CGGCGGAATTCCGCCCGCCGCAGGCGGCGTCAT 118467 28 100.0 33 ............................ CCGATGCGGGGTTATCGCGGACCGCCAGCTTGA 118406 27 92.9 33 ..........-..............C.. CCCCTTGCCGTAGCATGTCGCGCACGAATCGCG 118346 28 100.0 33 ............................ CAAGGAGAACGCAGCATGAACTCGCCGCTTCGC 118285 28 100.0 33 ............................ TTTTCGCGGTCAATGCGTCGAGGTTGAACTTCC 118224 28 100.0 33 ............................ GCTGGCCCGAGACGAGCAGCGAGCAGTCCACGC 118163 28 100.0 33 ............................ CATGCCGCGTCCATTCCATCCCTTTCGAGCGAG 118102 28 100.0 33 ............................ CGAGATTGTCGGGATACGTCGACCTGCTCGCAA 118041 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 41 28 99.4 33 GGTTCCTCCGCGTGCGCGGAGATAGACC # Left flank : ACGAGCGCTGCGAGCCGCTCGATATCTTGTCCGGTCAATGCGCGGCCGGCGGTGTGGATCAGGGCATCGCGAATGCGCCCGCACTCTGCAATCGCCAGGAAGCACGCCGCGACATCCAGCATATGATCGCAAAGCGGATGAAAGGGCGAGTGCTCGTCTCCGTCGCGCGGGCGCTTGCCCCACGCGATGAAGGTGTCGGTTTGGTTTGCTTCTGCTTTTGTATCCATGCGCCGTCGAGTCGTGTGTAATTGCCTCTTGGCAGAGATGTCACACTGCCGTCATTTAGTTTGGATACCTATTTTTTTACGATAAGAACAGGTCGGCCTCCATACGAATTTGCTGAATTTTCGTGGAGGAATGTCTGATTGTTTGTGCAGCGTCAGTTCGGAGTTGCGATGTTTGACAGCGGTCCGAAGGCTAGACATACTCTTGGCCGCGTGCCAAATTCAGAACATCGATTTGGTCGTTTGTTCTTTTAAATCACGAAGATAGTTGGTAGA # Right flank : CTGATCCTCTGTCCAGTAATCGGGTGACGGCCCGGCTCCTCCGCCTACGCGGAGCCCACCGCTCCGGCCAAACCTCACCCCTCAAACCTCCCCCGCGCCGCCTTAACAACCCCCACCACCGCCTCCGCACTCAACCGCGCCGCGATCGCCCTCACATACTCATGATGCCGCGCCTCAAGCGGCGCATCGAGATACTGCGCATGCAGATAGCGAATCAACGCAATACGCCGATGCTTCAACGCGATGCTCCGATCCAGCAGCGCGAGCGCCGCGCCCGCGTCATGCTCCTTGCACACACGCTCGGACAACTGCGCCGCCGCATCGCGCGAAGCATTCATCGCACGATCGCGTGCCGCGCGTCAGCCCGCAGGCGCCACGCATCGAAATCCGCGCGACGCCAGTCGAGTTCGAGCCCGAGACGTTTCGTGCCCTCGCGAATCTTCGGCTTGTGCAGCGTCAGCGTGAGCGCATCGAGCGCGGGCCACTCCTCGAACGAGAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCTCCGCGTGCGCGGAGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 129628-130388 **** Predicted by CRISPRDetect 2.4 *** >NZ_FCOJ02000012.1 Caballeronia glebae isolate LMG 29325, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 129628 29 100.0 32 ............................. CGGTGCGCTTCGCGAGCCATTCGTCGGAGTCC 129689 29 100.0 32 ............................. ATGTTTCCGTACTGCTTCCGCGTCTTCGCGAA 129750 29 100.0 32 ............................. GTCTGGCAGGCGATCGAATGGGCGAAGACCTC 129811 29 100.0 32 ............................. TACATCGGAAAACACATCGGCGGAAGGAAAAT 129872 29 100.0 32 ............................. GGGACGCCGTAACCCTCAGTCTCAAGATAGGG 129933 29 100.0 32 ............................. TGGCGGGGCGTTATCTCGCCGCTCACCATCTG 129994 29 100.0 32 ............................. GCGAACGAATCAATGTCTTCGGCGGCGGCTTC 130055 29 100.0 32 ............................. AGCCTTGCGCGATTGTTCTGGCGGGACATTGA 130116 29 96.6 32 ............................T TTTCGGTGGATGCCCTTCTACGTGCCGACAGC 130177 29 100.0 32 ............................. GCGATCACGTCGAGATTGACGAGGTCGGTCAA 130238 29 100.0 32 ............................. TTGTCGAGGGGCGGCATCAGCAGGTCGATGAC 130299 29 96.6 32 ............................G CCGGCGATGGCCACGCTCGCGAATGACGTCGA 130360 29 96.6 0 .........................G... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.2 32 GGTTCCTCCGCGTGCGCGGAGATAGACCC # Left flank : CGGATCGTGCGGCGCGAGGCGTCGCGCGTGTTTCGCAAGAAGGCCGTCATTCCCGCGATGATCGATCGCGTGAAGCAAGTGCTGCGTCTGGATGAGAAGCTGGAGGACAACGATGGCGCTGGTCGTGGTGGTGACGTCTGATGTCGCGGACCGGTTTCGCGGCTTTCTGGCGTCGGTGATGCTGGAGGTGTCGGCGGGTGTTTATGTGGCGCCGCGCATGAACAAGGGAGTGCGTGAGAGAACGTGGTCGATGCTTGCCGATTGGCATGGGCATGAGCCGCGGGGTAGCGTCGTGATGGTGTGGCGCGAATTGGACGCGGTGGGTGGCATCGGCATCGCGCATCTTGGTGTGCCGCCGCGAGAGCTTGTCGATGTCGATGGGATGTATGTCGTGCGGCGGATGTTATCGGGTTAGGTGTATTTCGTTCTTTGAAAATACGGTTTTGAGATTGGGTCGGTTTGGCGGTTTTTGCTTTGCGATCAGGATGTTATGAGGTAGA # Right flank : CGCGAGCATCACGGCGCGGCACGCCTCATTGATGGTTCCTCCACCTACGCGGAACCCCGCGCCCTTCTCCCCCCCGCCACAAAATAATCCGTATCAACCCGCGCCAAACCCTCCCTTCCCCTAATCCGATCCGCGATCTTCTCCGCGAGCATGATCGTCGGCGCATTGAGATTGCCGGTCGTGATCTGCGGCATGATCGACGCATCGACGACGCGCAATCCTTCCATCCCGTGCACGCGTCCTTCCCCATCGACGACCGCCATATCGTCATATCCCATCTTGCAGGAACACGAAGGATGAAAGGCCGTCTCCGCCTTCGCCTTCACGAACGCGTCGAGATCGGCATCGCTTTGCAGATCGTCGGAAGGATGAAGCTCGCGCCCGCGATACCGCTCCAAAGCAGGCTGCCGCATGATCTCCCGCGTGATGCGAATCGCATCGCGGAACTCGCGCCAGTCGAGCGGATCGGCCATGTAGTTGAAGAGAATGCCCGGATGCGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCTCCGCGTGCGCGGAGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.60,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 226339-227037 **** Predicted by CRISPRDetect 2.4 *** >NZ_FCOJ02000002.1 Caballeronia glebae isolate LMG 29325, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 226339 28 100.0 33 ............................ CACGCTCGGGGCGTCGGATTTCGTAGTCGATGA 226400 28 100.0 33 ............................ CGAGTCTTCCCGGCGTTGGAAACGTCATTCGCA 226461 28 100.0 33 ............................ TCTTTTTTCCGGTCCGTTTTCAGGCCCCGCTTG 226522 28 100.0 33 ............................ GCAGTCGCGGACTGGCCAGCTCAATACGACCCG 226583 28 100.0 33 ............................ TTGATACGCCGTGCCGTGTGACGGTGTCGCGAT 226644 28 100.0 33 ............................ CGCCTCATCAGGTCGGCAATATAGGGGCCCGTC 226705 28 100.0 33 ............................ CTTTTATCTTGCCGCTGAAGCGCTTCTGCGCGA 226766 28 100.0 33 ............................ TTTCATGTATCGCGGCTCGGTTTCGGGTCAGTG 226827 28 100.0 33 ............................ CGGGGTGTATCTAATGGCTGCGTGCTTGCGGCA 226888 28 100.0 33 ............................ GTAGTCGATGGATTGCAAGAACTGCGTGACGCC 226949 28 92.9 33 ...........T.............C.. CTTGTTGGTCGCGCCCGCAACCGACAGACGCGA 227010 28 67.9 0 ...........CCCTC..A...CCA... | ========== ====== ====== ====== ============================ ================================= ================== 12 28 96.7 33 GTTTCCTCCGCGTGCGCGGAGATAGACC # Left flank : TCCGCAGCAGATCGCGGATGTCATCGGGATCGCGCCGAAGTTGCCGGATGGGTCGGATGCGACCGCGCCGCGCGCATCGGGGACGTTGAAAGCGCATTACGCGCCGCGAACGCCGTTGGCGTTGCTGCCGTTTGCGTCGATCGCGCCGCTGCTTTCGGCTCGGGATCGGGCGAGCGGGAAGAAGATCGCGCTGGTTGCGCGTGCGTCGAGCGCGGGAGAATGGGCGCATGCGGCGAACGTGCATTTTGTGGCTGCGCCGGAAGATCCGCAGGGTTACGCGCGCGATCTTTACGGGCTGCTGCGGGCGCTCGATCGGGCGGATGTCGAGCGGATTCTGATCGAGAAGCTGCCGGAGACGGTCGAGTGGATTGCTGTTAACGACAGACTTGGGAGGGCGGCGGCGGCGTTCGAGGCGCAGGAGTGAGGGTGGGGGTTGGGTCGGATTTTATGAAGATGTGTTGTGGGGATTTTGCTTTTAGATCAGTGGGTTATGATCTAGG # Right flank : CCACCAAAACAAAAACCGCCCGGCGATACCTCAACCGAGCGGCTTTCCCATCCCTAAACCGAATCCCTTACTTCCCCAACCCCGACTTAGCAACCACTTGCTCCGCCGCCTGCGCGTAGAGCGCGCCGAGATGCGTCGTCGGATGGACGGTGTCCGCGTACATATACGTCTGATCCGCGCCCGCGACGGTCAACGTCTCCGGCGAGCAGAACAGCGAAGTCGCGAAAGCCTGCGGATTCGGCTCGCCGAACTTCTTCGCCGCCGCCGCCATCGCCTGCAGATTACAAGCCGTCCCGGTGTTCGACACCGTGAAGCCGAACTGCGCGAAATTCGCGGTGACATTGGCGAGCACCGGCACGATGTCGAGATAGATCACTTTCGACATCAGCCCCGTTTGCGTCAACGCCGCCGCGAGAGCCTGATTGAAGCCGAGCGATGCCTGCGTGAGCAACGCGCGCTGCGCCGCCGAAACCATCAAGCCTTGCGGCGTCGCGCCGATG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCTCCGCGTGCGCGGAGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.60,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //