Array 1 24766-23759 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNZQ01000009.1 Escherichia coli strain MOD1-EC5883 MOD1-EC5883_9_length_195701_cov_41.2285, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 24765 29 100.0 32 ............................. GTCACGACTGAAAAAAAACGCGTCACGCGCGC 24704 29 96.6 32 ............................T CTAAAATAGAAATTATTCACGGGGATGCTAAT 24643 29 100.0 32 ............................. TGGCAGATCGATTTTACCGCCAGAATGACAGG 24582 29 100.0 32 ............................. ATTAAGGCGGACGAGGAAAAGGCAGACGTTAC 24521 29 100.0 32 ............................. GTCCATGGCCTGACGAAGCTCGTAATATTTTG 24460 29 100.0 32 ............................. ACGACCAAATGATCTACGCGTATTGCCACCTC 24399 29 100.0 32 ............................. TTAGGCACAGAAAAAAGGCTACTCAGCGAACT 24338 29 100.0 32 ............................. TATCGACCCCCTTTCTCACGCATCGCCATCGT 24277 29 100.0 32 ............................. TTAACGTCTGGATCCTGTGTGCCATGGACCGT 24216 29 100.0 32 ............................. ATCAGGTAATCGAGACACCTGTCAGCACTCTC 24155 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 24094 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 24033 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 23970 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 23909 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 23848 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 23787 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 17 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 51286-50464 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNZQ01000009.1 Escherichia coli strain MOD1-EC5883 MOD1-EC5883_9_length_195701_cov_41.2285, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51285 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 51224 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 51163 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 51102 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 51041 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 50980 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 50919 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 50858 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 50797 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 50736 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 50675 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 50614 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 50553 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 50492 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //