Array 1 240-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQPD01000214.1 Staphylococcus pseudintermedius strain ST496-3 K8_S8_L001_R1_001_contig_214, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================== ================== 239 24 100.0 45 ........................ GCATAAAGTTTTGATATACACGATCGAATATGAGTTCTCGTCCCC 170 24 100.0 50 ........................ AGTGGTCCAGAATTAATACATGGTAAAGGAGTATATCAGTTCTCGTCCCC 96 24 100.0 47 ........................ GAAGACCAATTAGAATCATATCGCGTCTTAGAAGAGTTCTCGTCCCC G [88] 24 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ================================================== ================== 4 24 100.0 48 TCTTCTACGGGGTAGTTATCGAAT # Left flank : CGTAACACTAATGTCTATATCTGGAGCATTGTTAGCTGTTACTTCGCTTTCAGTCGTATACTAATTAATAAAGTATTTACTAATGTGGTTGTATCAAAAATATTTGCTTTTATATCTTGCTTCAGATTTAATTCTTATTGTTTGTTTTCTTCTTTTTATTTTCTTAAGTAGTAACTCTCGAAATTGCACTACACATCCAATTCCTCAATAATATGCATTTCATTCGCTGTTATTTGTATTTAGTATTTCTAATTCCAACTTAATCGCAAAGAAATTATTTATATGAAAGTTATTTTTGTTTCTGTTTATTTAGAAATTGAATGTCGATTAATTTCAATAATAATGAATTACAGTTTAAATCTTGATTTTTTGTTCCTCTTTTTTGCAGAATATTTTATCAAATCAAATATATTTTTAATACTTTTTCTCTATTCTACGAGGATTATCGATTTCTTTTTAACCAAGCCAATTGGGATCATCAAGATGAGATCCTCGTCCCC # Right flank : T # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.09, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTTCTACGGGGTAGTTATCGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 33-1576 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQPD01000121.1 Staphylococcus pseudintermedius strain ST496-3 K8_S8_L001_R1_001_contig_121, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 33 36 80.6 29 ...C..C.GA..........A.............CT GGTGAAAGCTCTGTGTGGACGTTCCATCA 98 36 97.2 29 ..................................G. AATGTACTCTACTACGGTGCTATCAGTGT 163 36 100.0 29 .................................... TTGAAACAGAAACACTTAACGATTCCGAT 228 36 100.0 30 .................................... TGCAGGAATCGGTTTTGTCCTGTATGCGCG 294 36 100.0 30 .................................... TATTTAAATTACGTTTCGCACGTTCAATCT 360 36 100.0 29 .................................... AAGTCATCAGCCGAAAACGCTTCTGATGT 425 36 100.0 29 .................................... GGAGAAAGCTTTGTGTCGACAGATACTAA 490 36 100.0 29 .................................... AATGTGCTTTTATACGTTGTTATCAGTTG 555 36 100.0 29 .................................... GGAGAAAGCTTTGTGTCGACAGATACTAA 620 36 100.0 30 .................................... AGAATACGCCGTCGTCTTACCGCTTGCAGT 686 36 100.0 29 .................................... CATTAACTGCTTTGTCAAACTCACTAATT 751 36 100.0 30 .................................... GGAAAATGTGGTAATGAAGGAGGATTTTGA 817 36 100.0 30 .................................... AGAGAAGAAATTGTGGCAATACGGTATTGT 883 36 100.0 31 .................................... CGTCGATTTCGACATAATCAATCGCCTTATG 950 36 100.0 29 .................................... AATATAAAAGGCGCTAAGAGGCGTTATAT 1015 36 100.0 30 .................................... TGAGCCTTTATCATTTAGAACAGCTAGAGT 1081 36 97.2 30 ............................A....... ACAATACTTGATGCAGGCAATAACAAGCTG 1147 36 97.2 30 ............................A....... ACAATACTTGATGCAGGCAATAACAAGCTG 1213 36 97.2 29 ............................A....... GGACAACAACAAGATATTGCTCAAGCCTA 1278 36 97.2 30 ............................A....... TTTCCTTCGTGATTTCTTCTTCTACTTCGA 1344 36 97.2 29 ............................A....... GCTAAAAGTCAATGTTACTTCATTCCTTA 1409 36 97.2 29 ............................A....... TCACAAACCGTTTATGAAAAAAATACATC 1474 36 97.2 30 ............................A....... CGAAAGTAAAGATAGTATGCAAGGTGCAAG 1540 35 88.9 0 ..........................-.CA.C.... | TC [1573] ========== ====== ====== ====== ==================================== =============================== ================== 24 36 97.8 30 GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Left flank : ACCCACGCGACACCCGATCGTACGAGCGCTGAG # Right flank : CCTTCTTTATAATCGTACATCAACCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAGATAAATAGAAAGTAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCGCATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Alternate repeat : GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //