Array 1 6522-5653 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLIX01000165.1 Acinetobacter baumannii strain ABOB06_a contig-2000005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 6521 29 96.6 31 ............................T AAAAATAGTGTGTTAATTATTTATGATGAAA 6461 29 96.6 31 ............................C GTATACATGCACATCAATACGATATCCCGAT 6401 29 100.0 31 ............................. TACTATTATAATGATCTAAACCCATTACAAC 6341 29 96.6 31 ............................T GCAGCTACTCGACATGTTGGTAGGGCAGATG 6281 29 96.6 31 ............................C AGTCGGCTGGTGCTAATTGAATAAAATCGTT 6221 29 100.0 31 ............................. GATTGAGGCGATTTTTATCGCGGACATTGCC 6161 29 96.6 31 ............................C AGTCCCCGCTTTGAAGCATTCCCATCAGTAC 6101 29 96.6 31 ............................T CACAGCTATCGTCTGGCTGCCGTCGCGTAGA 6041 29 93.1 31 A...........................T TATTATTAAACGGGAAAAGTATATTCTTGCT 5981 29 100.0 31 ............................. TACTATTATAATGATCTAAACCCATTACAAC 5921 29 100.0 31 ............................. TCATCAATAAGTTGGCCTTGATTTAAATAGT 5861 29 100.0 31 ............................. GATACAAACGAGTTCGCATCTCGACCAGAAG 5801 29 100.0 31 ............................. TTATCCAGATAAAACCATATCTACAAAGTGG 5741 29 96.6 31 ............................T CAACCTGAACACAGACATACATGTTCTATTG 5681 29 82.8 0 ...GC...................AT..T | ========== ====== ====== ====== ============================= =============================== ================== 15 29 96.8 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : | # Right flank : TTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTACA # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 5194-4 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLIX01000151.1 Acinetobacter baumannii strain ABOB06_a contig-14000054, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 5193 28 100.0 32 ............................ TTCTTCTCTCTGATTACAAGCTCCCTGGGGCA 5133 28 100.0 32 ............................ ATAAGGACGATGCAAGTGATAGTGCTCACCGA 5073 28 100.0 32 ............................ ATGCAGATAAAACAGTAAAACTCTATGAAAGC 5013 28 100.0 32 ............................ ACTGGTTAATTTTAATAATGCGGATGGATATT 4953 28 100.0 32 ............................ TCTTAATCTCTTCAATGTTCATCTTCAACCCT 4893 28 100.0 32 ............................ AAAACGTTGAACATTAGTAAGTGTTAGAACAC 4833 28 100.0 32 ............................ TTACGATGGCCAACAGAAATATTAGACATATA 4773 28 100.0 32 ............................ GATAAAGGTTGTATGCGCTCTAAAGCGTTAGT 4713 28 100.0 32 ............................ AATCCAAACAGCAAAACCGATGATACCTGCAA 4653 28 100.0 32 ............................ AGTGGGCTTATATCTCTTCTATAAAAAACGGA 4593 28 100.0 32 ............................ AATGCTGCTGTTGACGTGGCTGGTCCAGTTGC 4533 28 100.0 32 ............................ GGAGTCAGGCACACTATTAGATAGCAGTGTGC 4473 28 100.0 32 ............................ ATGATGAACCTGTCTTACCTTCAGATCCTTCT 4413 28 100.0 32 ............................ AAGCATTTCAGTTGCACCAAGATGAATACTTT 4353 28 100.0 32 ............................ TCAAGTGCAGATGCAGCCTAATTATTCTTCTT 4293 28 100.0 32 ............................ AAGAACGTTTGGCAGCAAAAGGAACATTACCA 4233 28 100.0 32 ............................ TTATTGTGAGCACCTTGATTGCTGTGCGCTGC 4173 28 100.0 32 ............................ TACAGCGGGAAACTTGAAAGTCATTGCGAAAT 4113 28 100.0 32 ............................ TGATTGCCCCCTGAGGAAACTGTATAAAGTCC 4053 28 100.0 32 ............................ AAACACCAACTAAGCCATTCCCTATTCAAAAA 3993 28 100.0 32 ............................ ATGAACTTTTAATGGATGCATGCGCCGCCCAC 3933 28 100.0 32 ............................ ACGAACAACGATAATTTGGAATACACGCTCAT 3873 28 100.0 32 ............................ TCAGGAGAAAGATCGTTCAAAAGCTCAAAACC 3813 28 100.0 32 ............................ TGAAAGTTTTGATATCCACTCTGCTGTTTCAA 3753 28 100.0 32 ............................ AGATGGTAAGAAAATTATTGAGTCTGGAGACA 3693 28 100.0 32 ............................ CGACAGTCCAGTTGATCAGATCTTGATTAGAC 3633 28 100.0 32 ............................ AATGACATGGTTCAACAATTAAATTCATCTCA 3573 28 100.0 32 ............................ GTTCTTTTCTGCAATATGTGCCATTAGGTATT 3513 28 100.0 32 ............................ ATTTTAGATGAAACAAAAGATAGCAGGATTAT 3453 28 100.0 32 ............................ AGACCAAGCGGATTGACCGTATTGATAAATAA 3393 28 100.0 32 ............................ TTCTGCAATACAAATCACTGGATCAGCCAGGT 3333 28 100.0 32 ............................ TGAGTCTTTGATTTCCCAAATATTACTTGAAA 3273 28 100.0 34 ............................ CCTGAAAAATTTCACTGTGTCCATTTCGTTATTA 3211 28 100.0 32 ............................ TATGTCTTTAAATTCTGAAAAAACACTTGTTC 3151 28 100.0 32 ............................ GAAAAAATTGAAAACTTTTTAGAAGTAAATGA 3091 28 100.0 32 ............................ GCCACACATGCCTAAAAACGCAAGTGCGCTCG 3031 28 100.0 32 ............................ ATTATCAGATAAGCCTTTTATGAATGATCGTT 2971 28 100.0 32 ............................ ATTAGCTATTAGCTTTTTGGCAACAACAACAG 2911 28 100.0 32 ............................ AGTTCATGAAAACAGCTTTAAAAAGAAAGCAC 2851 28 100.0 32 ............................ TCCGAAGGTAGTGAAGCTGTGTGTGAATTTAC 2791 28 100.0 32 ............................ TTGCAAGCTCGTCTAGCTAAAGTAGACCCTAA 2731 28 100.0 32 ............................ TGGTACGACAACTACGAAAAGCTGAGCAAAGT 2671 28 100.0 32 ............................ TCAACTTAAATGGATGCTCCCCGCGGTGAATT 2611 28 100.0 32 ............................ TTGATTGCTAGACGGATTTTTAGGCAGATCAT 2551 28 100.0 32 ............................ GAGTTTAATGCGCTATATGGCGACGAGGATTT 2491 28 100.0 32 ............................ CATGCAATCGCGTTGATTACCGCAGCTTCGAA 2431 28 100.0 32 ............................ ATGAGCCGCAACCATACGGTCTATGACTTCCA 2371 28 100.0 32 ............................ ATAGCGCCCTGCTCTATGTTGTCACTTCCGAA 2311 28 100.0 32 ............................ TCCAAGTGAATCGGCTCCTAATGCAAATGACC 2251 28 100.0 32 ............................ TGAAAACCAATATGCTGCCTAATTGCCATAAG 2191 28 96.4 32 ....A....................... GATCTGCGTCCATTTGTACTTGCTGCGGGTGC 2131 28 89.3 32 ....T.......AT.............. ATATACAGCACCGCTTAGTGCGACGCGGTCAT 2071 28 89.3 32 ....T.......AT.............. GCCCACAGGTTGAGCATCAACGGCCATCGAGA 2011 28 89.3 32 ....T.......AT.............. ATCATAGAGCTCACTTTGTCGTTGAGCCTGCA 1951 28 89.3 32 ....T.......AT.............. AGAAGGCCCGTAATTTAACTGTAAGCCGTGGT 1891 28 89.3 32 ....T.......AT.............. TCTTCCTGAGTTTTAATCCCATTTGCCTTACA 1831 28 85.7 32 ....T.T.....AT.............. CATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 1771 28 89.3 32 ....T.......AT.............. TTCAGGGAATTATCGTGAAACTTTCATTGACT 1711 28 89.3 32 ....T.......AT.............. TGCACCAGCTGCTGGCTGGTTGAAATCTGCAA 1651 28 89.3 32 ....T.......AT.............. AGAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 1591 28 89.3 32 ....T.......AT.............. TGTTTCAAAAGCTACACCATCAAAACCATTGC 1531 28 89.3 32 ....T.......AT.............. TATTTAAGTAATAAGTTTAATAACGACCTAGT 1471 28 89.3 32 ....T.......AT.............. AACACGTTCTCTATATCGCTGTTTGCGGTCAT 1411 28 89.3 32 ....T.......AT.............. TTCAGTTGGATATGCCTTTGATACCAAGAAAC 1351 28 89.3 32 ....T.......AT.............. GCCTGCAGACACGGATTTACGCAGCTGATCGA 1291 28 85.7 32 ....T.......AT...........C.. TAACCAAACTATGTCATCGATCGGAGATTTCA 1231 28 89.3 32 ....T.......AT.............. TTAAAATAAATGCCTGTGGTTTTTTCTTAACT 1171 28 89.3 32 ....T.......AT.............. AGTTTCCGAAGTTGAATTACACTCGCCAAGTT 1111 28 89.3 32 ....T.......AT.............. TAACACAGTGATTTGATTACCTTGAGCAACCC 1051 28 89.3 32 ....T.......AT.............. ATCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 991 28 89.3 32 ....T.......AT.............. TCATCCACCTTTGATGAAACGGATCCACGCAA 931 28 89.3 32 ....T.......AT.............. TCTTGTGTGACGGCCTCCACTCCAGATCCCGC 871 28 89.3 32 ....T.......AT.............. TTAAGCTTCAAAAATAGCCATTGATTATAAAA 811 28 89.3 32 ....T.......AT.............. TGACAACTTTCCACGGCAATCAGGGCTTTCCA 751 28 89.3 32 ....T.......AT.............. TAAAGATGCACGTGGCCTAATGCAAGTTATTC 691 28 89.3 32 ....T.......AT.............. TTTAAAATTAGGTGCTGAGTTACCACGGCTCA 631 28 89.3 32 ....T.......AT.............. TAAACCAAGAACTTGAAGATTTTGATGCTTAT 571 28 89.3 32 ....T.......AT.............. TAAAAATAGTGTGTTAATTATTTATGATGAAA 511 28 89.3 32 ....T.......AT.............. CGTATACATGCACATCAATACGATATCCCGAT 451 28 89.3 32 ....T.......AT.............. ATACTATTATAATGATCTAAACCCATTACAAC 391 28 89.3 32 ....T.......AT.............. TGCAGCTACTCGACATGTTGGTAGGGCAGATG 331 28 89.3 32 ....T.......AT.............. CAGTCGGCTGGTGCTAATTGAATAAAATCGTT 271 28 89.3 32 ....T.......AT.............. AGATTGAGGCGATTTTTATCGCGGACATTGCC 211 28 89.3 32 ....T.......AT.............. CAGTCCCCGCTTTGAAGCATTCCCATCAGTAC 151 28 89.3 32 ....T.......AT.............. TCACAGCTATCGTCTGGCTGCCGTCGCGTAGA 91 28 85.7 32 A...T.......AT.............. TTATTATTAAACGGGAAAAGTATATTCTTGCT 31 28 89.3 0 ....T.......AT.............. | ========== ====== ====== ====== ============================ ================================== ================== 87 28 95.4 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : AATA # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : GTTCTTCATCGCATAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2-3144 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLIX01000610.1 Acinetobacter baumannii strain ABOB06_a contig-7000037, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2 28 100.0 32 ............................ TTGTTGTGTATATAGGTTTTGCAGCTCATCTA 62 28 100.0 32 ............................ ATCATCGTAAGCATTGAATCGCGTGCCTTCAA 122 28 100.0 31 ............................ AATGAGAAGAAAGTGGTTGCTATCGACTTCT 182 28 100.0 32 ............................ AATATGCTCGAATGAATTCCTTGTAGCATTCT 242 28 100.0 32 ............................ AAGAACTGTGCGTCTTGGCGGTGGGAAAATCA 302 28 100.0 32 ............................ ACTCCATAATTGCAGGTGTTGAAAGCTCACCG 362 28 100.0 32 ............................ TTCTTGATCATCGTTATGTAAAAACCATTCCA 422 28 100.0 32 ............................ AAGAAAAGTATGAACAGCAACTTATAGAAAAA 482 28 100.0 31 ............................ GATGACCGTACCAACTGGATTTTGATATTCA 542 28 100.0 32 ............................ TTGTTGTGTATATAGGTTTTGCAGCTCATCTA 602 28 100.0 32 ............................ TATAATCGAAAAACATCCAAAAGCGGGCAAAA 662 28 100.0 32 ............................ AAAACGACCTTGTGACTCTGTGAATTCAATCT 722 28 100.0 32 ............................ AGTTGCAACTTTAACAACTGACGGTACTGCTG 782 28 100.0 31 ............................ ATAGTGGAAATACACGTAAGTTATTGATTTA 842 28 100.0 32 ............................ TGTTGTTAGGGCTATTTCTGCTTTATCCGATA 902 28 100.0 32 ............................ AACTCATACAGCGGGTCCAAGAGCCTATGGTA 962 28 100.0 31 ............................ AAGACCAGTTTTGAAGGATATTAACTTTTTA 1022 28 100.0 32 ............................ TCGTGCTTGGGTATCACATATTGATGTGACTT 1082 28 100.0 32 ............................ CACTAATCTCTTTGATTTAATTAAGTTTCAAC 1142 28 100.0 32 ............................ ATCCGCATCATCAAAAATCGCAAGTGGGTTTG 1202 28 100.0 32 ............................ AATAACGACGGTTGCGCTGTTGCACGTTCAGC 1262 28 100.0 32 ............................ TTGATGAGAAACTGTTATTGTGTATGTCTCAC 1322 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 1382 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 1442 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 1502 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 1562 28 100.0 32 ............................ GTTTAAATCCATAAATGAATTTTGCGGTTTTT 1622 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 1682 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 1742 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 1802 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 1862 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 1922 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 1982 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 2042 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 2102 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 2162 28 100.0 32 ............................ ATAATTCCGCCATCCTCGGCTGAGATATGGGT 2222 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 2282 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 2342 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 2402 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 2462 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 2522 28 100.0 31 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTT 2582 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 2642 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 2702 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 2762 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 2822 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 2882 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 2942 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 2997 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 3057 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 3118 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 53 28 98.9 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TG # Right flank : AGAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //