Array 1 652778-655449 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025399.1 Streptococcus thermophilus strain GABA chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 652778 36 100.0 30 .................................... GACTCTATTGGCGTTTTACCACTTATTGCT 652844 36 100.0 30 .................................... ATTCTAGATAGTAACGGAAACAAAGTACAG 652910 36 100.0 30 .................................... GTATCCAGTTATCGTCATTCTCTTTACCTG 652976 36 100.0 30 .................................... CCAAATTTGCATTAAACAAAACGCTCCTTC 653042 36 100.0 30 .................................... CTCGTAACTAAGTTTGAAAACTTCTTTGAC 653108 36 100.0 29 .................................... ACAGTAAGATACACGTAGTTGATGAATTG 653173 36 100.0 30 .................................... AAGACATATCTTTTTAACATCATGAAGACG 653239 36 100.0 30 .................................... TAAAACTTACTGCAGACAGTGTTAATTATC 653305 36 100.0 30 .................................... CACAAAATAATTCGGTAGTTTTTACTAACT 653371 36 100.0 29 .................................... TTTGACCGTTTATTTAGACGTGCTAAAGT 653436 36 100.0 30 .................................... AATATCTACAGGTCACTACAAAGCTACGCT 653502 36 100.0 30 .................................... TGATAGAGAATGGTCGTTAAATGGTGTAAT 653568 36 100.0 30 .................................... TCAGTTTCAAATGCTCCACCACCGATATTA 653634 36 100.0 30 .................................... GTTCGGGTTCAGGTGGTTTTATACTCAACT 653700 36 100.0 30 .................................... AACATGCATCAGTTTGGATACGAGGTCAAG 653766 36 100.0 30 .................................... GAACAAGTAGAAGGAGGAGTGGAAGAGTCG 653832 36 100.0 30 .................................... ACGAGTGGGCTATCAGTCACGGACTGGATA 653898 36 100.0 30 .................................... CTTGACTAATACGTCTGGATTTACTGCACT 653964 36 100.0 30 .................................... AAATAGACTGGAATGGATTGAGAATAATCT 654030 36 100.0 30 .................................... TTGAAAAAGATAGACAATATCAAACTCTGG 654096 36 100.0 29 .................................... TCAGAAAGCGGTTGCTGTGCCTGTGCTGG 654161 36 100.0 30 .................................... AGACCATCCGTTCTTTGTGTTTAGAGCCAT 654227 36 100.0 30 .................................... GATACCGTTTTTACAATAATATCTATACCA 654293 36 100.0 30 .................................... GGCCGCATCGGAAAATGGGCTTGTTATCGG 654359 36 100.0 30 .................................... CTGCTCGATAAATACTTAGCTACTGGTTTT 654425 36 100.0 31 .................................... TGTTGATAGCGTCACCCACTGAGTTATCTTG 654492 36 100.0 30 .................................... GGAAACGCTAGCTTAGCTAAATTTCAAGCA 654558 36 100.0 30 .................................... CTTGAATCTGCTTGACTGATAATGTGCTAT 654624 36 100.0 30 .................................... GGAAACGCTAGCTTAGCTAAATTTCAAGCA 654690 36 100.0 30 .................................... CTTGAATCTGCTTGACTGATAATGTGCTAT 654756 36 100.0 30 .................................... TCATAGCTACTTTGAGAGTGAAGAAGCACA 654822 36 100.0 30 .................................... AAACCGACTTGAGTGGATTGAAAATAATCT 654888 36 100.0 30 .................................... ATTGATAGAACCGGTGAAATTTTTCCTATC 654954 36 100.0 30 .................................... TAGATGACATAAAAATTTCACACAGTGAAG 655020 36 100.0 30 .................................... CGAACATTGCAGAACTGGGGAAATGGGTAC 655086 36 100.0 30 .................................... TAAGAAACCTGTCGGAGAAGCTAAAAGCTG 655152 36 100.0 29 .................................... CTCACTAGTCCATTAGTGCGGTTAGGGAA 655217 36 97.2 30 ...............G.................... TGGTACTACACCTCAAACGGTGAGTGCATG 655283 36 100.0 30 .................................... GCAACAATGGTTATAATTATCCCACACAGG 655349 36 100.0 29 .................................... GCATACGCTGTTACAAACACACCCCACCC 655414 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 41 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGAAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAATGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTCGGTCTGCGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACCTGGCTAGCTCCTTGGTCATCTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 889686-889434 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025399.1 Streptococcus thermophilus strain GABA chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 889685 37 100.0 35 ..................................... ATGAAAATTACTAAAGCGATAAATATCCAGCGGAC 889613 37 100.0 34 ..................................... TAATTACCGTGGGTATCGCATTAGATTGTGGATT 889542 37 97.3 35 G.................................... CTTTATAACTCTTTTCTAGCTTTTGATAAGCACTC 889470 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 4 37 99.3 35 AGTTTCCGTCCCCTCTCGAGGTAATTAGGTTTATATC # Left flank : TTCTTTAATTATTACAAAGACAAGCTATTAAAAGATTTTTAAACCCCAACCAGAATAAATGGCTGGGGTCTCTTCATTATAATCCGACTTCTTTTAAGGCATCCGCCAATCTTGCAAAATCGGCAATAGATAAAGCTTCTCCACGAATGGACGGCTTGATACCAGCTGCTTCCAGAGCCTTTTCTAATTTGGTCTTGACCTCTTCTGACTTCCCGAAGTGACTTGTCAAGTTGTTCCAAAGGGTTTTACGACGGTGAACAAAACTGATTTTAGCAATGCGGAAGAAGAAATCTTCGTCTTTAACTTGAACAAGTGGTTGTTCACGGCGGGTCATCTTGAGGATGGCTGAATCAACGTTCGGCGCTGGCACAAAGACTGTACGTGGCACGATGAAAGCAATTTTTGCTGTCATGTAGTATTGCACCGCAATTGAAAGTGAACCGTAAGCTTTGGTATTTGGTTCTGCTGAGATACGGTCCGCTACTTCTTTTTGCATCATC # Right flank : CCCATATCTTATGCTCTAGGCAGTTGCTAGAGGCACAAGATGTAGGACCTACTGGAAACACTATCTATAGTGTACCATATGATTAAAGGTCTATAAAGGCTTAGAAGAAGAGAATGTCATCTAATTTTTCAGCACTATGGTAGGGGCTAAAACTAGTCACCTCTTCTTTGGTTGTCACATACACTATTATGCTGTCTTCTTCATCAGCCTTGTAGAAGCCCTCGATATCCTTAAGGAGAGACTGATAATCATTTCTTGACAGGTCGACCTCGAAACAGGATTTTTGCACCCTCACGCCATAACCCTCAAGTAATTTCGAGAGTTTAAGTCTACGTTTGTTACTTCGGATATCATAAATAATCAGACAAAACATGGTTTTTTGTTTGGCAAACTCACGCTCTTCTTCGCTGAGGTTAAAGTAAAGTCCCATTAATGCCCTCCTGTGTAACTTGTCTCATAGAGACTAGGGTCAAGTTCTCTAAAAGCCCTAATCAAACTCT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTCCGTCCCCTCTCGAGGTAATTAGGTTTATATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 3 1397148-1396122 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025399.1 Streptococcus thermophilus strain GABA chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1397147 36 100.0 30 .................................... AGACGTCCATTTTGCTATCTAGTTCAGGTA 1397081 36 100.0 30 .................................... TGTTAGGAATTATCTTACTAAAGTCGAGAA 1397015 36 100.0 30 .................................... ACGGTGGACTTTATGAGGGGCTTTATATTG 1396949 36 100.0 30 .................................... CTCTTTTATGTATTTGTGGGGTTTTGGCCT 1396883 36 100.0 30 .................................... TGATGAAAACAACATTACAGACACTGGTGA 1396817 36 100.0 30 .................................... AAACCTGTTTAGGCTAGATACCACAAACAG 1396751 36 100.0 30 .................................... CATTGTTTTTTATGTTGCTTAAGGGTAAAG 1396685 36 100.0 30 .................................... TGAATTTGATAATATCTATGTTTCTTTTAG 1396619 36 100.0 30 .................................... TGATTACTCTCAAGCAAGAGGGAGAAGGAT 1396553 36 100.0 30 .................................... AGTCCAAAGGTATTTCCCTTTAACCAAAGC 1396487 36 100.0 30 .................................... ATCAATTTCATCTTGTATGTCTTCAATTGC 1396421 36 100.0 30 .................................... TTGTGTTATTACATGAGTACAAATTGGACA 1396355 36 100.0 30 .................................... TAGAAAGTGTTTTACTTTATGAGACTAGAT 1396289 36 100.0 30 .................................... GGTATTCGTACCCAAGAAAGCTTGCACCGT 1396223 36 100.0 30 .................................... GCGGGCTACCTGTTACGTTTTCGGGGGCGT 1396157 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAATCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //