Array 1 997088-994780 **** Predicted by CRISPRDetect 2.4 *** >NC_014836.1 Desulfurispirillum indicum S5, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 997087 28 100.0 32 ............................ ATCCCCTGAAGCTCAAAAATCACCCACATTGG 997027 28 100.0 32 ............................ ATATCACCCACGACCCTTACGATGGATACCAA 996967 28 100.0 32 ............................ GGAAGAAGTTGGCAGTGTCGGAAGACGCTCCA 996907 28 100.0 32 ............................ AATTGGCTCCAGCTTGGCCACACCAAGATTCA 996847 28 100.0 32 ............................ GGGTATTGGTCGGTAGATGAAACCCCGTACAT 996787 28 100.0 32 ............................ TGAACGCACTCGCCACCAGGTACGCTGTCATC 996727 28 100.0 32 ............................ TGAAGGCGATGACTACGTTGCCGCAGATGATC 996667 28 100.0 32 ............................ AGTTTGCGTCATCTGCAATCATATAGCCATGA 996607 28 100.0 32 ............................ ATAAGGAGGGTTCAGCCACACCCTACCCTCCC 996547 28 100.0 32 ............................ GAATTGAACCTTGTGTATGGCAGCCTGGTGAA 996487 28 100.0 32 ............................ TTGATATCGCACTGGTCAATGGCCTTCCCGTC 996427 28 100.0 32 ............................ TGAAAAATCTTGTGCTGAATCCGAGTGTCAGT 996367 28 100.0 32 ............................ AATTGGCGCAGGTGTCCGGTGTATCTCGGTAG 996307 28 100.0 32 ............................ TTGAAACAGAAGAACCAGAATGATCCCTATAG 996247 28 100.0 32 ............................ ATAGGTCCTGTACCAGAATGGCGCGGCGCTGA 996187 28 100.0 32 ............................ ATATGGCACATGGGTGGTGTCTGCTGGGTAAC 996127 28 100.0 32 ............................ ACCTTGCCCTTTCCCTTGCACTCCCGGCATTT 996067 28 100.0 32 ............................ TTGAATTGAGACAGCGACAGCGGGAGAGCACA 996007 28 100.0 32 ............................ TGCCGATTGTGGTATCGTAAAGACTCGTTGTC 995947 28 100.0 32 ............................ TCGGTATGTATTTCGACACCCGGCGCAGCTCC 995887 28 100.0 32 ............................ TGTATATCCTCGTCGTACAGCAGGCCGCTAGC 995827 28 100.0 32 ............................ GAGCTGCTTGGTTTCGTATACCATTGCGGACA 995767 28 100.0 32 ............................ GATTGGAACCTGGGCGACTTCCGGGTGATAGC 995707 28 100.0 32 ............................ AGCGAACGCTGCACGATGGAGGTTTGGTACTG 995647 28 100.0 32 ............................ TGCTCGATATCATCAGCATCCATGGTAATATC 995587 28 100.0 32 ............................ AGTTCAAGTCCCAGCAAAACAGGCTCCCCTCT 995527 28 100.0 32 ............................ AGCCGGTAGTTTGTGGCGTGGATTGTCGAGCC 995467 28 100.0 32 ............................ TGGCGGGTATCGCCGACCTGGTCGGTAATGTG 995407 28 100.0 32 ............................ GCCTGGGCACCCTCGGCCAATGTCTCGGGGAT 995347 28 100.0 32 ............................ AGGAACCATCCAGCAGCTCCTGCCCATCCAAA 995287 28 100.0 32 ............................ TGCAGCGCTATATCAGCGTTACAGATTCCGTT 995227 28 100.0 32 ............................ AATCGCTGAACAGCTCCCTACTATCGTTGGTC 995167 28 100.0 32 ............................ ATATATCCCGGCGCTGGCTGCGCAGGGCGAGG 995107 28 100.0 32 ............................ GCACGATACAGCAGGGCCTATTGGCGTTAGTG 995047 28 100.0 32 ............................ CGTGTGACCGGCAAGGGGCAGGACTGGATCAG 994987 28 100.0 32 ............................ GCACTGAAACGCTGCGGGCTATTACAGATCAT 994927 28 100.0 32 ............................ TCGCCCGATTCGGTGGAGTCAAGCGAAAACAC 994867 28 100.0 32 ............................ ATTGAAAAGTCGGTCCAGGGTGCCAGTATTTC 994807 28 92.9 0 .............C.............G | ========== ====== ====== ====== ============================ ================================ ================== 39 28 99.8 32 GTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : AGCCTTGCAGCCCTTGAAAGCATCATGACACTTTCATGGCTGACGGGACTTCAGGACTATACACAAACTTCAGGTATCTTGCAGGTGCCAGCGCAGGCAGCATATGTGCAAGTAGCGCGTGTACAGTCTAAGATGACCGCTTCCAGAATTAGACGAGCACTGAAGCGAGGATCACTCTCTGAAGAAAGAGCCCTGGAACTTTTGCAATCTCGAGACCAGCTTAACCAGCCTTTTTTTCGTCTGTTAAGCGCATCTACTGCACAAAAATTTCCGCTTTTCATAGAGCAGAGAAATGCAGAGAAAGCAGGCAAGCAGAGTGTATATTCGGCTTACGGGTTGAGTGTAGGCGGAAGCACGGTCCCATGGTTTTGACCCTTTTTTCTTGATGCATGGTAACGTCTAGTATTTAAACCACTTGGCCAGCAACCTGAAATTATGGTTGCTGGCCATTTTTAGGCGGAACATCTTTACCACGGGTTACTTCCTGCGCTACAGTTATA # Right flank : AGTGACAATACGTCACGACTTCGCCCCTTTATTAGATATGGCTTCAATACTTCTTTTATCTTTATGTTTGGATGAGCTGCATAATTATTTCCGCATGCGGAAATTGGAGGCACCCTCCCCGCACACGTGGAATGAATACCCCTGTTGCGATAACGGGGTGCCAGAGAAATCAATACGCTTTTTTTTTGAATGCAAGAAAGGGATTCCTCTCGCAGCCGCAAAGAACGCGAAGAAGATGGGTGACAAATCGATTTTCTTGGCGCTCCTGGCGTCTTGAGTGAGCGCAGCGAACGGGCGAGAGATATGCCTTTTCGTTTGAATGCCTTTCTTTGAGGACAGGTCTCTGTGTGTGAGACTCCCCTGTGAATAGTTACTACGCTTTCAACCTTGACGGTCGCGAGCCATGACTCTATTCTCCTTATTGGTAGCTCTGGAAACACGGTGAATCTCCCAGCCGTAGGACGCCCCGCAAGGGGCGGCTCGCGTGAGGGTGGAACGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1123444-1127359 **** Predicted by CRISPRDetect 2.4 *** >NC_014836.1 Desulfurispirillum indicum S5, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 1123444 36 100.0 37 .................................... ACTTTTCTCCATATTTTGCCGAACTTTGCCTTTAAGC 1123517 36 100.0 33 .................................... GCGTGAGCCTGTTATGCTGGGCTCTGCTTTGTT 1123586 36 100.0 35 .................................... ACATACTATGGAGTTTGAGAACTTCTTTTATTTCT 1123657 36 100.0 38 .................................... GGCTACCCAGTCATAGTCATTAGTTGCCAACATTCTAG 1123731 36 100.0 40 .................................... TTGGCCATAACCGTCACTTCTGAGAACATTTTCAGCCGTC 1123807 36 100.0 35 .................................... TAAAATTTTTTGTGTATATCCCTGCACTGTTTTTT 1123878 36 100.0 35 .................................... GAATTTAAGGAAGTGACATATACGTCATCTTCCGG 1123949 36 100.0 34 .................................... GACATAAACCACCTCTCAAAAATTATTTACCTGG 1124019 36 100.0 36 .................................... CGCGACGGTTGTCGCGTTGCTGTGCTGGAGGGGCAC 1124091 36 100.0 33 .................................... GAGAATGTCACTTTCTAGTGAATTTAAGGAAGT 1124160 36 100.0 36 .................................... GACTTCGCAATTCCTCCTTTTGGCGAAAGGACTTGT 1124232 36 100.0 37 .................................... ACGACGGCAGTGCCGTCAGTAAGTATAACTTCTATAC 1124305 36 100.0 38 .................................... TCACAAACTCCACCGTTGTTAATAGCGTTTACTAACTC 1124379 36 100.0 37 .................................... ATCCTGCACTATTACCCAGCGACGACCTTGGATACGT 1124452 36 100.0 40 .................................... TCTGCTCACAAGTTGAGCAGGCGTTCCTGCAGTACTGTGT 1124528 36 100.0 35 .................................... TCTTACAGTCAAACTCCTTGAACATATGCTTTAAC 1124599 36 100.0 34 .................................... CCCTTCCCTTTCAAGAAGAATGGGGCCTTCCGAC 1124669 36 100.0 37 .................................... GCAAATTGGCGTCTTGCAAATAGGCATCTTGTAAATT 1124742 36 100.0 41 .................................... AGAGATCAAAACCTCCGGATGTTGTTTCGGAAAGTTCTCGC 1124819 36 100.0 36 .................................... GGCTTCGCAGTTCCTCCTGGCTCCTGAAGAACTTGT 1124891 36 100.0 33 .................................... CAGTTTAGGGAGCTTTATAACCGGGCTGTGCGC 1124960 36 100.0 34 .................................... TCATAGTCCTCACCCGGCTGAGGTTCGCCACCGA 1125030 36 100.0 37 .................................... ATTCCCTGCGGCAGCCCGAAAAACCAGAACCTCCTCA 1125103 36 100.0 34 .................................... GTTCAACATAAGATTCTTGATAAGACGTTGTTTG 1125173 36 100.0 33 .................................... GCTTCCTCAGCTCTGCTATGATTGATTCTCGCT 1125242 36 100.0 36 .................................... GGTTGACGGATTTACCATCAACCATGACACATATAG 1125314 36 100.0 36 .................................... GCCCTCGTCAGAATCGGAATTCGGCTAGTCGCCTTC 1125386 36 100.0 36 .................................... AGCGGTGTAACCCAACTCAATGAAATGATTACGGAT 1125458 36 100.0 33 .................................... GCTGCGCGCCTGTTCCAGTCATGCATCACTCCC 1125527 36 100.0 35 .................................... TTTGTTAACGACGCCATGGTCGCCAATAACTTCTA 1125598 36 100.0 36 .................................... ATGAACAGGGTAACTGTATAGGCCACTAACCACGGT 1125670 36 100.0 35 .................................... GTCAAGTATAAATCGTTTCATGCTACACCCCTTTA 1125741 36 100.0 36 .................................... CAACTTCAGCGCAACTGCGCTGATATCGGCCTGGTT 1125813 36 100.0 40 .................................... AAGCCACTAGCCACGGTGCCATATCACACGCTCCCATTGC 1125889 36 100.0 36 .................................... GTAGGCCAGTAGGCCATTTTTAAAGGGCTGTCCTCA 1125961 36 100.0 38 .................................... CTGCCAGTTTTTTCGTCGACCTCCTTAGTTTTGGTATC 1126035 36 100.0 36 .................................... ATACCGGACGACATAAACATCTGATATATAGTCTGG 1126107 36 100.0 33 .................................... AACATAAATCACCTCTTGAATATATTTAACTGG 1126176 36 100.0 35 .................................... TGGGGTTGCCATCTCCGAAGGCCAGCTTCAACGCA 1126247 36 100.0 34 .................................... TCGGAGCCGTGCCCATATGCTCCGAGCCAGCGCA 1126317 36 100.0 39 .................................... GATATGTAGTCTTGAAACTTGTCTCTAAACATCATGCAC 1126392 36 100.0 36 .................................... GTACCAGCAGCGTGTGATGGTGATCGTGTCGCTGCC 1126464 36 100.0 38 .................................... CTGCCGTTGTTAAATCCACAGTAAACAGCGTTGAATGT 1126538 36 100.0 34 .................................... GCCTCAAAGATTGCGTGTGGGGTCAGGTTGATAA 1126608 36 97.2 34 .........................A.......... CAAAACGACTTTACCTCTCCACTAATTCCATAAA 1126678 36 100.0 34 .................................... CCTTCCAGTATATCCTGGGGACGAGTGCTGTAGT 1126748 36 100.0 35 .................................... ATCTGCTGTCTCCGTACCATCTTTTGGAGAGCCAC 1126819 36 100.0 37 .................................... ACGCGACGGTTGCCACGTTACTTTTTTGAATGGGTAC 1126892 36 100.0 35 .................................... TCAGGGTCAATAGTCGGCACGTTCATTTCAGTTAC 1126963 36 100.0 37 .................................... AGACTTGTTGATGCCCTTAATACCCTTAATCTCTTTC 1127036 36 100.0 38 .................................... CCCGAAGGCGATCTTCAGGGCAACCGCCTTGAGGCCGG 1127110 36 100.0 35 .................................... GCCTTTCCAAGTTCTATTGAAACGTGGCGTTTAGT 1127181 36 100.0 37 .................................... AAAGCCGTTGATGATAGCAGGATAATTCGCCATTGAC 1127254 36 100.0 34 .................................... ATGCTCAAGATATTCTTCGCACGAAACATATTCC 1127324 36 80.6 0 .............CT......AG........A.A.G | ========== ====== ====== ====== ==================================== ========================================= ================== 55 36 99.6 36 GACCGAAGACCTGTCGGAAACGACGGGGATTGAGAC # Left flank : TACTCTGTGCGGATGTAATCGTAGCCAGCAAGGCCGTAGGCATGGTAAAGAACACTGGTGAGCATGGTGCTTCTCCCGGAATTATTTGGTTGTAATCCCGATAAGTGGCACCATGCTCACTTTTTTGTCAATGTATCCTCAATACGGAAGAGCCCTCTTTTATTCCGGGCCTGTCGCCATCGCCATAATGCTTGGCGACATCTTTGCGAACTGCAAAAATATAATTGTCTACCACCATGATCGGGGCCGATATTATCGGAGTGCCGTAATTTAGCCCAGGGGTTACCGTTATTGTGACAATACACTGCCAGTGATTTTCAAAAAACGTCACATAAAGACTTCGTAGGCCGTTTTCCAGGGGTTTGCGAGTTTGTAACTTGTTCTTTAACAAAAGAATATAACTCACTCGGTTATTTTTATATATATTTTATTGCATTTCTGTCCATGTTTGCGAAAACAGCCTCTGGAATGCAGCCTGTAAAGGCATCGATGAAGGGGGT # Right flank : GTTGTTATTCCCGGCTGGCTTGCAAGTAGTGTAGAATGCTTGATTTGATGTGGAATTCCTCAGAACTGTGAATGGAGGTGTCATGGGAAAGTGCTGCATGGTGACCATGCTTGGTACAATTAAAGCTCCAGCTGATCTGAGCGAGCGAGCGAGTTATGCTTTGTCGGGTGAGCTGGCTAGCTGCTTTTCCCTGCATGGTTCTCAATATTCAAATACATTACCGATTATAGTTAGGCTATCGCAGGATATAGGATTCTCCTTGGTTCCCATTGCGACCAGGGAAGCTCTGCGAGTGCAAAGGGATGTTCTTGAAGCCGAGGGATTAGATTATTCATGCCTTGAAGAGGCTGTTATTATTGAAGAAGATGACTTCGAAGCCACTTTCGCGACTATTAATACCATTTTAGGGGCTGCGGATGAGGTCATTCTTGATGTCAGCCATGGTTTTCGTCACCTGCCGATTTTGGCAACTGTCAGTATGATTATTCATAATATTACGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACCGAAGACCTGTCGGAAACGACGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //