Array 1 911204-911477 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP075108.1 Salmonella enterica strain CFSAN060808 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 911204 29 100.0 32 ............................. GTGGATATGCTGGCCGAGAAGGTTGGAACAGA 911265 29 100.0 32 ............................. CCATCCTGGCGGAACTGTATGCAGAAACAGGC 911326 29 100.0 32 ............................. GACTACCCGGCATTTGTGGACGCATATCGGCA 911387 29 100.0 34 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTCGT 911450 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================== ================== 5 29 96.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 921704-923870 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP075108.1 Salmonella enterica strain CFSAN060808 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 921704 29 100.0 32 ............................. TGAACTATATCAATATAAAACTCACTAAAATA 921765 29 100.0 32 ............................. CCACACGTTGAGCGTAAACCTCTGCCGTTTCC 921826 29 100.0 32 ............................. ACTCCGCCACCCGCGTGGCGGGTAATAAAAAA 921887 29 100.0 32 ............................. TCAAACATCAGCGATTCATCGACAGCGTATGA 921948 29 100.0 32 ............................. TATTCACTAAGCATTTCATTTTTTATAATGAT 922009 29 100.0 32 ............................. CGACCCCCCATTTTTCCGAATCGTAAACGAAC 922070 29 100.0 32 ............................. GGAGGTGATAACCGCCTCGCTGAACGCTACGC 922131 29 100.0 33 ............................. AACATCCAACGGATTCGCTTTACTCAACCATGC 922193 29 100.0 32 ............................. TCGTTTCGTGTTGCTTCATCTGGCAGGTCCAA 922254 29 100.0 32 ............................. TCAGTTACCGATGTTAAAGCAAAATCCGCTAA 922315 29 100.0 32 ............................. CGTAAGAGCCAGGCGATGCCAGGCACTAACTC 922376 29 100.0 32 ............................. GCATGACAGGGCGTATTCATCCCACGTGCGTT 922437 29 100.0 32 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCG 922498 29 100.0 32 ............................. ACAAAAGAAATTGTGACACCTAACACGGCCGA 922559 29 96.6 32 ............................T GTAGTTATACTAATAATGTAGTTGAGTAAGAG 922620 29 100.0 32 ............................. GAACTGATGGGCGCCATTACCGGCGAATTAGC 922681 29 100.0 32 ............................. GACTGGTATATCAACAATCATGAGCAATTCTG 922742 29 100.0 33 ............................. GAATCCCAATCTATTACCGGCACGTAGCCGGGG 922804 29 100.0 32 ............................. GCAATATCAACCGGGCGACCTGTCGCCTGCTC 922865 29 100.0 32 ............................. CTCTACGCTCGTTGCCCACGGAAAAGTCTCGT 922926 29 100.0 32 ............................. TAACCGGCACCTTTACCCTTGCGGAGGCTGAG 922987 29 100.0 32 ............................. ACGATTTCGAACGCGTCAGCGGTCCTGACTAC 923048 29 100.0 32 ............................. CATGGCTGAGGGGATGGCGCTTAAAGACTGGC 923109 29 100.0 32 ............................. CGGGCGTTAACGTCCGAAGAGGTTCGCGAAAC 923170 29 100.0 32 ............................. TGGCACGCCCCCGGCTTCTCTATCCGCGCTTT 923231 29 100.0 32 ............................. GTCACGTTCTGGAGTGTTCACAGCGTGAATTG 923292 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 923353 29 100.0 32 ............................. TAACGCTTCAATGTCGCAAGCTTCAGTTCGTT 923414 29 100.0 32 ............................. GATTTACTAAGGTCAACGAGGGATTGAATTGG 923475 29 100.0 32 ............................. GCGAGGATCTTGTGTTGCAGGTTGGTCTCGCC 923536 29 100.0 32 ............................. CAGCGCCGTCCCGCTGCGCAGATGTTCGGTGA 923597 29 100.0 32 ............................. CAGGTCTATTGGACGATCGATAAAATCATTCA 923658 29 96.6 32 .............C............... ATAATAAGCTCAATAATGTAGATATTGAATCA 923719 29 96.6 32 .............C............... ACGACGGCACAAAAGAAATTTCCACCGTGGAT 923780 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 923841 29 96.6 0 .............C............... | A [923868] ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.5 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : CGCCAGTGCTGCGCATTCTTGCTCCGGAGTGGGATGACGCGCCGCGAGAGAACTGGTTATCCAGCGCCATGCGTAACAGCGCCTATGTCTATCCCGATCATGGGCGCATGTGGCTGACGCAGCGCATATTACGTGAGCAGGGGACGATTCGGATGCCGCAATCTGCCCGCTTGTTGATTGAGTCGGTCTACGGTGAGGATGTCAACATGCCGGTTGGATTTGCAAAAACCGAGCAATTGCAGGAAGGCAAATTTTATTGCGACCGGGCATTTGCCGGCCAGATGCTGCTTAACTTTGCGCCGGGCTACTGTGCTGAAATTAGCGATTCTTTACCGGAGAAAATGTCAACGCGGCTGGCGGAAGAGTCTGTCACGCTGTGGCTGGCGAAAATCGTGGATAGCGTCGTAACCCCTTATGCCAGCGGTGAACACGCCTGGGAGATGAGCGTGCTGCGAGTACGTCAGAGCTGGTGGAATAAACATAAAGACGAGTTTGAAAAA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCGATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //