Array 1 142962-142384 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAGJWM010000010.1 Escherichia coli strain IITD146 contig00010, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
    142961	    29	 100.0	    32	.............................	ACAATCAGATCACGATCGATGCCTCGCGTGAG	
    142900	    29	 100.0	    32	.............................	ATTTTCGCAGCGGGTAACCGCGCCCGGCGATC	
    142839	    29	 100.0	    32	.............................	TTTATGTGGAGTATCAGTGCCTGGGTGGAAAG	
    142778	    29	 100.0	    32	.............................	TGGGGCTGAGCATGGCTAAACAACCGAGGCGC	
    142717	    29	 100.0	    32	.............................	GTCAACTGGCACCACAGGATGATGGCGGCGAA	
    142656	    29	  96.6	    32	............C................	CAGGTCGACCGACTGGAGGCGGAGATTGTCGG	
    142595	    29	  96.6	    32	............C................	TGTTGTTTTTCTGCCGGATTAACGCGGTGCGA	
    142534	    29	  96.6	    32	............C................	TTGTCGGGCTTGTTCGGCGCGGGTTGTTAACT	
    142473	    29	  96.6	    32	............C................	CCAGCGAAGGACTTGCTCGTGTGGTTAAAGCC	
    142412	    29	 100.0	     0	.............................	|                               	
==========	======	======	======	=============================	================================	==================
        10	    29	  98.6	    32	GTGTTCCCCGCGTCAGCGGGGATAAACCG	                                	       

# Left flank :   GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT
# Right flank :  GACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCTTTCACCAGCGGTAGCATTATCCGTATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGTTGTTGATTATCAAGCCTGACATCGTGCCAGCTTGTTCCCGCAGGGAAGGCGGCGGTTTTTGCACGTTGCTGATAGCCATCCTTATTCCCAAGATTCCAGTTAGTTGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCAAAAACTTCCGCGTCGTTACAGCACCCGGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA

# Questionable array : NO	 Score: 6.19
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGTCAGCGGGGATAAACCG
# Alternate repeat :   GTGTTCCCCGCGCCAGCGGGGATAAACCG

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [5,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.14   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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