Array 1 88-4144 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHXV010000020.1 Endobacter medicaginis strain CECT 8088 Ga0372410_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 88 29 89.7 32 .A.GA........................ GGCTGCGCGCACATGATGCTGTGTCCGCGTTC 149 29 100.0 32 ............................. TCGCAACCGCGCTGATATTTCCGGGGCACGGC 210 29 100.0 32 ............................. GCAATCTTGCCGGCCGCCACTAGAGCGGATGG 271 29 100.0 32 ............................. CGGATTACCGCTTCTTGGGCATGTTGTGGGTG 332 29 100.0 32 ............................. GACGACTTCTACATCACCCCTCCGGAGGCTAC 393 29 100.0 32 ............................. GCGCAAACGTCTGGTCGCACGGCTGGCCGCAG 454 29 100.0 32 ............................. GTGTAGGTTCGATAATCGAACCTAGCGGATAC 515 29 100.0 32 ............................. CCCCACGCTCCCATGACACGCAGGCCATCGAC 576 29 100.0 32 ............................. GGCGGCAGGCCGCCGAAACGCATTGCCGACGC 637 29 100.0 32 ............................. CCGCCACCAATCCGACCACGACGGGTTGTGGT 698 29 100.0 32 ............................. CCGCACGTGGCGCACCGCCGTAGGGGCTGGTG 759 29 100.0 32 ............................. CAGCGGATTCATCGCAGATTGCGACTGGCATG 820 29 100.0 32 ............................. CTGCGGCCGCTGACTTTGCCACCGAATGCCAT 881 29 100.0 32 ............................. ACTGACATGACGACCCCCAAGGTGCAGGTTCA 942 29 100.0 32 ............................. TGTTTTGCCTGAAAACAGGATATGAGTGTTTC 1003 29 100.0 32 ............................. GAATACGTCCTAACGAAAGCCGGCCTCGCCGC 1064 29 100.0 32 ............................. CTCGATCGAGCGGCCATCGGCCGCATCTTCAT 1125 29 100.0 32 ............................. GTGACAGGGTTCTGGCGGACCGCCCGGCAGGC 1186 29 100.0 32 ............................. TCATGGGCAGCCGTTTGCCGCGCGCCTGGTCG 1247 29 100.0 32 ............................. GCCGCCCCGCCAGCATCGCTTGCACCGCCCAT 1308 29 100.0 32 ............................. ACGGCCAGTGTTCCGGTCACCGGATATGCGCC 1369 29 100.0 32 ............................. GATGCGGTCAACTGCGTCGCCGAGAGCGGCAC 1430 29 100.0 32 ............................. CCAGCGACAACGCGCACCTGACGGATGCATGT 1491 29 100.0 32 ............................. TGATGCGGCTCATGGGCATCCGCACCCGGTGA 1552 29 100.0 32 ............................. AACCCCTACACGATCGACAACGTGCAGGTGTC 1613 29 100.0 33 ............................. CCGCGAACCGGCTAATGGAGTTCCAGAAGCTGC 1675 29 100.0 32 ............................. TTGTGCAGCACCCACCACGGAGGCGCGTCGAA 1736 29 100.0 32 ............................. GCTGATGCGCAGACTGCAACGCAGAGCATCGC 1797 29 100.0 32 ............................. GTGATCGCCGACGTGACGCATCCGCCCGCCAC 1858 29 100.0 32 ............................. CTTTGCAGGGCGCGGGGATGCGGCGGACACGG 1919 29 100.0 32 ............................. GCCCGTGGCAGTTGGCGAGACGATGCCCCGCG 1980 29 100.0 32 ............................. GCCGTTCGAGACGTCGCCAATGAGCAGGGTAT 2041 29 100.0 32 ............................. GCGCCGAGGTCTATTGCGGCGCCACCAGCGAG 2102 29 100.0 32 ............................. GCAGCGGCGTTTGTCCGTGGCACAGACCAGGT 2163 29 100.0 32 ............................. GCTATAGCCGTGATCCGCAAATACAGCGCCAC 2224 29 100.0 32 ............................. GCGATGGAGGCTTACGCTTACGGTGTCGCGCA 2285 29 100.0 32 ............................. GTCCTCTACCTTCTCTCGGGGCGGGAGTTCAC 2346 29 100.0 32 ............................. GACGCCACATCTGACTCTGCGTTGTAAATCGG 2407 29 100.0 32 ............................. GCCCGCAATGACCTGCTGGCGCGCGGCGCCGA 2468 29 100.0 32 ............................. CTGAACCACGCGCCGCAAAAGCAGATGGCAGC 2529 29 100.0 32 ............................. GCTCACATGCTCTCGTTGGCGGAGAGTGCCGA 2590 29 100.0 32 ............................. GCGGCCGCCAGCTATGCGACAGGGCTCGCCGA 2651 29 100.0 32 ............................. GCGAATGCCGTAACCGCCCGCTTCCGGGCCAC 2712 29 100.0 32 ............................. GCGTCGCACAGCGCTACCAGCGCATCGTGAGG 2773 29 100.0 32 ............................. TCACGCCACCACCAATCGACCGCAAGTGGGTC 2834 29 100.0 32 ............................. GCCACACGGTCCCCGCACACAAGCTCAATCTG 2895 29 100.0 32 ............................. CGTTGATTGCGAAGCAGGCCGAGATCCTGCGT 2956 29 100.0 32 ............................. TTACCCAATCCAGCATTTCGGTGTCTGTTGGC 3017 29 100.0 32 ............................. CAGATCATCACGCACGACAGTAGTGCCACATG 3078 29 100.0 32 ............................. GTCACGGAGGCCGAGCGTACGACGATCCAGAC 3139 29 100.0 32 ............................. CACGCCATGTGCAACGTGTATTCATTCGGCAA 3200 29 100.0 32 ............................. GCGGTGCTCGGTTCGACGTGCTTGACCGTCGA 3261 29 100.0 32 ............................. GTCCATCGACGCGATCCTGCGGTCCCCACCTG 3322 29 100.0 32 ............................. GCTCACATGCTCTCGTTGGCGGAGAGTGCCGA 3383 29 100.0 33 ............................. GAGGACGTTCCCGCCATCGTGCCGGACGTTCCC 3445 29 100.0 32 ............................. CATCCGCGATTGACGCTGACGCCATCGTGCGT 3506 29 100.0 32 ............................. CGTGCCAGCGGCAAGCCCCGCGCCAAGACGCG 3567 29 100.0 32 ............................. GCCTGGCCTCCGCCGGGAGGCCGGAGATCACT 3628 29 100.0 32 ............................. TTGGATGAGGACGAAACCGACGATGCAGACAG 3689 29 100.0 32 ............................. GCACCGGATTTCATCGAGACACCGTCTGCGAA 3750 29 100.0 32 ............................. CCCATACCGTGCAGCGCACGCAGCGAGCTGCC 3811 29 100.0 32 ............................. ACGCCTTCTCGTTGGTGACGTTGATGTTGAGC 3872 29 100.0 32 ............................. TCCAGAACGCCGGTAATGGTGGCTGCACCCCA 3933 29 100.0 32 ............................. TCCTACGTCGACCCGATCGCCGAGATGGCCGG 3994 29 100.0 32 ............................. CCAACATCATGCAGGCGGCCGACCTGTCGGAA 4055 29 100.0 32 ............................. CGCAGGGGCATGTGGCGCATGCCTGCCGGCCA 4116 29 96.6 0 .........................G... | ========== ====== ====== ====== ============================= ================================= ================== 67 29 99.8 32 GCGTTCCCCGCACCCGCGGGGATGAACCG # Left flank : GCAATCGTTCCCGTGTTCGTCGTCATCGTCCTCACCCCTGAGGCGGAGACCGTCCGCTAACGGAGTGTCTCAAACAACCGTGGGGCGG # Right flank : GGATACTGACGGCAGGTGCACAGGATGCTCCGGGCCGCCTTCTTCAAGGCAATCGGCCCCGACAATGAGCGGTGTTGGCAGGATCGGGCACGCTCCTGTCTCATGTCGATCGCCGATCCGTCATCTTGGGGCATGGCCGACGCCGACAACCTGACCGAGCGATGCGGGGAATCCGAATCAGGCTTCCCGCGATGACCATGTCTCAAAGCCTGTCGTCGCAGGGCTGCCTCAGGGCAGCGCCGGTCCCTTGACCACCCGCGACATCGCCGCCGGCCGCAGCCAGGTCTTGAATGCGTTCCGCACCGCGTCGGGGGTCGCATCGTAATAGTGCTGTGCGCCGACATACGGCGTATCGAGCGGCATCCCCAGCCCGGCGAGGTAGAGATCCTCGTCGGCGATGTCGTCCACGCTCGCCCGCTGCATCGGCACCTGGCGCAACAGCGAGGCCTTCGCCAGCGTCAGCTCGCTGTCGGCGACCGGTGTGGTGGTCATCTCGCCCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 77956-78106 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHXV010000011.1 Endobacter medicaginis strain CECT 8088 Ga0372410_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 77956 29 100.0 32 ............................. ATGGTTCCACGGGGATACGGGCAGGATTGTTT 78017 29 100.0 32 ............................. CGGAGGGCCGCACGCAGCACGGCGACCTCATG 78078 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GCGTTCCCCGCACCCGCGGGGATGAACCG # Left flank : GTCCTCGCGCGGCTGATCCCGTTGATCGAGGAAGTGCTGTCGGCGGGTGGACTGCCGCTGCCCGAGGCGCCGGAGGAGGCGATGCCGGTTGCATTTTCCGACCCTGAGGGATTGGGTGATGCTGGTCATCGTGGTTGAGAATGCGCCGCCGCGGCTGCGGGGCCGACTGGCGGTCTGGCTGCTGGAGGTCCGGGCTGGTGTGTATGTCGGCCAATACGGCCGACGCGTGCGAGAGATGCTGTGGGAGCAAGTCCGCGAGGGCATTGGCGACGGTAATGGCGTGATTGCCTGGGCAGCTCCGACGGATGCGGGTTTCCGTTTCGAGACCTGCGGCGCCAACCGCCGTGTTCCTGTCGAATTCGACGGCTTCCATCTGGTCGCCTTCACCCCGGAGGCGGCTCACCCGACGGCATCATTGCTGACCACCAACGACAGGCGTAAAAAGCGGTAGGTTTTTTGACAAGAGAATCAGTAAGTTTTTACAATCACTTCCATGAAGA # Right flank : TAATTGTGAACGCTTGGACTTGTCATCCCACAGCGTTCCCCTGTACCGCCCGCAGATTGTGAGACACCGATCTGAAGCCTACGCGGCGACGGCCGCGAGTGGAAGCTGCGCGGCGCGGATTGCGGCCGGTGGCCG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //