Array 1 2313755-2310408 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJJY01000002.1 Micromonospora sp. Llam0 Ga0236288_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================================================== ================== 2313754 29 100.0 32 ............................. CCTGAGAGACACCCGACCCGCCCGAAAACTCG 2313693 29 100.0 32 ............................. AGGCCAGCGGCAGCACGATCCACTGCTGGTCG 2313632 29 100.0 32 ............................. CCGCAGTTGCCGATCGACGTCGGCAACAATCC 2313571 29 100.0 32 ............................. ACCTGGACCGGGTGCGCCGGGTGGACAGCTGC 2313510 29 100.0 32 ............................. CCGTAATTCCCACCCGTGCTGTAGGTGACCAC 2313449 29 100.0 32 ............................. TGGGCGCGCAGCTGCGTGTCGGTGCAGTAGCC 2313388 29 100.0 32 ............................. CCGTCGTACCTGGGGAAGGTTGTCGCGGGCGG 2313327 29 100.0 32 ............................. GGAGTGTGGCCCGGATGGTGGCCTTCTCCGCC 2313266 29 100.0 28 ............................. CTGGAGGAACCCGTCGCCCGGGAGTGGG 2313205 29 100.0 0 ............................. - Deletion [2313177] 2313184 29 93.1 32 G..A......................... TCGGCGACCGCGTCCCGGGCCTGCCCAGCGAT 2313123 29 100.0 32 ............................. ACCGCCAGCCAACCAAGAGCCGCCTGGCCCCG 2313062 29 100.0 32 ............................. TCGCCGCCGTCCAGCGGCGCGGCGGAGGTGGT 2313001 29 100.0 32 ............................. GTCAAGCTCACCTACGCCCGATGGGGGCAGCT 2312940 29 100.0 32 ............................. GTCGATAGGCTGTCCTTGACCGAATGTCGGCC 2312879 29 96.6 32 ............................T ATTGCTGCCGCGCCGCCGGTCGCGATGATCAC 2312818 29 96.6 32 ............................G GCGATGCCGCGTACCGCCGTGACGCTCGCGTA 2312757 29 100.0 32 ............................. GCGGCCGAGGTGGACGCCCAGGTCGAGGACGC 2312696 29 100.0 33 ............................. AGTCGAAGGTGTCCGGCCCGGCAGTAGCCCACC 2312634 29 100.0 32 ............................. GAATGGCCTCGGCATGACCTTCGTCTTGCCGT 2312573 29 100.0 32 ............................. TCGATCGGCAGCTGCACCGACCTCACCCAGTC 2312512 29 100.0 32 ............................. TCGCGTGACGCCCGGCTGCACTGCCCGCTCCC 2312451 29 100.0 32 ............................. ACCTCGGTCGGCGGATCGAAGATCGAGCCGTC 2312390 29 100.0 32 ............................. CGGCCGCGTACCGCGACACGCTGTACGTGTAC 2312329 29 100.0 32 ............................. CGGCTGCTGGCCGACATCCGGGACGGGCGCCG 2312268 29 100.0 32 ............................. CGCCGGCGCCGACGGGTGGCGGCAGGTCGCCG 2312207 29 100.0 32 ............................. ACCGAACACCGCTACCCGGCCGAACAGCAGGC 2312146 29 100.0 32 ............................. ATGTCGGTGATCGGGATCGACGGTTCGACGCC 2312085 29 100.0 32 ............................. GTGCTTCGTTCGGCCACCCTGTGCGACCCGAT 2312024 29 100.0 32 ............................. GGGGTGTCGGTCGGGGTGACGGCGAAAAGCTC 2311963 29 100.0 32 ............................. AGCTCCTCTCCATCCTCGCCGAGGCAGCCGAT 2311902 29 96.6 32 ............................G CAGCTCGGCGACACCTGCCACGGCACCATCGT 2311841 29 100.0 32 ............................. TCTGGCAGAGGATGCCGCGTATCAAGGCGGTC 2311780 29 100.0 32 ............................. TCTGGCAGAGGATGCCGCGTATCAAGGCGGTC 2311719 29 100.0 32 ............................. GGTTCCGGATTTGCTCGCGACCGGTTCCGCCG 2311658 29 100.0 32 ............................. TCTGGCAGAGGATGCCGCGTATCAAGGCGGTC 2311597 29 100.0 32 ............................. GGTTCCGGATTTGCTCGCGACCGGTTCCGCCG 2311536 29 100.0 32 ............................. TCGACCGCATCAGCGACACGATCGCGGCGATC 2311475 29 100.0 32 ............................. TGGCGAAAAACTGCAGGTCAGGGTCGACTACT 2311414 29 100.0 32 ............................. GCGGCGGCGTGGCCGACCAGCCGGACGCCGTC 2311353 29 100.0 32 ............................. TTCCCGTCCTCCCACCGCTGGATGGTGTTCCG 2311292 29 100.0 32 ............................. CGCCGCGAGCAGTGGGAGTCGATCTCCCTGCT 2311231 29 100.0 32 ............................. AGGTCCGGCCGCTCCTTGACCAGCGGGTGGTC 2311170 29 100.0 32 ............................. ACGGGCCGGGCGTCCGCGAACGCGCCCGTATC 2311109 29 100.0 32 ............................. ACGGCATCGATCTGGTCCCACGGCATCGGCAG 2311048 29 100.0 32 ............................. AGCTTCGCGCCGCTCGGGCAGGAGCAGGTCGG 2310987 29 100.0 32 ............................. TGACCAGCCGGATCCAGCGGGACGGGGCCACA 2310926 29 100.0 32 ............................. AACAAGCCGATCCAGGAGTGCCGGGTCACCGT 2310865 29 100.0 32 ............................. CCGGCGTCCAGGCGGTCCAGCAGACCCCGCAC 2310804 29 100.0 32 ............................. CTTGCTAGGCCTACCGGGTGTCTGTCACACTC 2310743 29 100.0 32 ............................. GCCAGCGACAACCTGAAGCGCGCCGTCCTCGG 2310682 29 100.0 32 ............................. GCCTTCGAGCGTTCGGTCCCGACGCTGCTGGT 2310621 29 100.0 32 ............................. TGGAAGGAACGAACGCCGCCGCCCATGAGCAG 2310560 29 100.0 95 ............................. TGACGCGGACGCTCGCGGTAGTCGCCCGCGTACTACTCGCTGCGTACGCGGGTGATCCCACGTCTCGGCTGTTCGCGATGCGGCTCGAGCAACGG 2310436 29 75.9 0 G.CG.......A.G.........CT.... | ========== ====== ====== ====== ============================= =============================================================================================== ================== 55 29 99.3 33 CTGCTCCCCGCGCACGCGGGGGTGATCCC # Left flank : TCGCGTGGCCACCCCAGAACAGATCGAGGCCGAGCTCGGACCGGGCACTCAACTGCTTCGCGTCGACACCACCCAGTTCGACCCATGGTTCGTCGCCGGCATCATTTCCCGCACCGACAACGTCCGCCTCGCCGGCCGAGTCGCCAGCACCACGGGCGCCCTGCGCATCGACATCAGGCGCCTCACCATCCCGGTCATGCCACCGGAACAGCAGCGAGCGTACGGACACGCCTTCCGCCAACTCGTCGAGTTCCGCATAACCCTCGACCGCGCCGCAACGACCGGCGCCACCCTGGCTCGCGAGATCACCGATGCTCTAACCAGCGGAACCCTTGGTCTCAGCCCTCGGCCGACGCTACAACGCTCAGCCGAGCCGTCGAAGGATACGCTGTACCCAGCCGTAGAGCCACAGCCCACAAACACCGGCTCGGAGAACCGCCCTACGAACCAAAGTGATTAAAAACCCTGCAGTTGATCTTTAGCGCCCCAGGTCAACAAGC # Right flank : GCTGCGCCCAGCCGACGGAGACCTCCACGCCGCCGTCCTGGCACTCGTATGTGCCGGGGGTACGTTGGGACAGGGGAGCACCCACGGAGCACCATGGATCCATGGTGGACCACCTTCAGTTGAACGCGGCCACGTTCCCGCAGGTCAGGCCGATTGCCAGGAGGGCCTGAACAGCCGGGGTGGCCGGTGATGCAAACTTTTAATCCTTAGGTTCTGGGTTCGAGTCCCAGGCGGCCCACTAAAGGTCTACGCTCGCGAACACCTCGCGAGCTGGGCTTTTGCGCCCCGTCCAGGTTTCTGGGCGGGGCGCTTGTTGCGTTGAGGGCCTCGGTAGCGCCGGGGTTTACCCGGAAGACGGGGGTTGCCGTGACGGCCTCGGTGTTGATCTTGATTTCTTCGATGAGTAGCTCGCAGAGTTGCTTGCGTTCGGGGTCGGTGCCGTGGGTGATGATGCGGGTGATGTCGGTGCCGAGGGTGTCGAGTTGGTCGGTGGTGACGGG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2329764-2336811 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJJY01000002.1 Micromonospora sp. Llam0 Ga0236288_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 2329764 29 100.0 33 ............................. TGTTTCAACTGGTGCGGGTGAGGGGGCCGGTCC 2329826 29 100.0 32 ............................. TCCTCGGCCGCCGACGTCTCACCCCGACGAAT 2329887 29 100.0 32 ............................. TTCTTCAAGCTCGCGGGCGTGACCAACGCGTA 2329948 29 100.0 32 ............................. GACCTTGAGAGGATCGCCGACGGACTCGGCGT 2330009 29 100.0 32 ............................. ACTTTCGGCGCTACAGCCAGGAACGATGCATG 2330070 29 100.0 33 ............................. TTCTCCTGGACGCACCGCGGCTGATCAGCGCCC 2330132 29 100.0 32 ............................. TCGTCTACCGCGAACCAGAACGCATCCGAGCC 2330193 29 100.0 32 ............................. GGGTCCACGGATTATATAGAGGGATTCGCTTT 2330254 29 100.0 31 ............................. GTGAAGAAGATGTTGCGCAACCCGTCGTACC 2330314 29 100.0 32 ............................. GATCGCGCTGCCCCAGTCGAACAAGTTGTACA 2330375 29 100.0 25 ............................. TCCCCTGTTCCCTGTTCCCTGCTCC Deletion [2330429] 2330429 29 100.0 32 ............................. GCACACCGGCAGCGGGCCGCCCGACAGGCAGT 2330490 29 100.0 32 ............................. GTTAACGTTCGCTGGGGGTCGCGTCAAGTCGA 2330551 29 100.0 32 ............................. CGGGAGCCGGAGGTACGCCGGTAGCGTGGCCA 2330612 29 100.0 32 ............................. GCCGGGCCTCACGTGGGAGGTGAAAAACGCCT 2330673 29 100.0 32 ............................. CATGGCGTCCTGGTAGGTGCGCCGGGTGAGTT 2330734 29 100.0 32 ............................. CAGAACCGGGCGACATCACGACGGACCAGGAA 2330795 29 96.6 32 ............................G CGCGGGACCAGGGCGACGACGGGGACCAGGAC 2330856 29 93.1 32 .................AA.......... CTGGACCCTCGCCCGCAGCCGCCACCACCTCG 2330917 29 100.0 33 ............................. CGGGCCGGGCAGACGGAAGCCGAAGAATGCCAT 2330979 29 100.0 32 ............................. ACCCGGCTACGGCCGATCAGGGCGACCACGAT 2331040 29 96.6 32 ............................G GGGCTGCGGTGGACGCGCTGACCGAGACAACT 2331101 29 96.6 36 ............................G CAGCTGCAGGAACTCCATGTTGATCAGGGTGGCGCC 2331166 29 100.0 32 ............................. GTCGCCCACGCCGAGTCGTCTGGCTGATCGGC 2331227 29 100.0 32 ............................. TCCCCGCCGGTAGTACGGGTCGGGCAGCGGGC 2331288 29 96.6 32 ............................A CGGCTAAGTGCGTGGGGTCACCCGTCTCAACC 2331349 29 100.0 32 ............................. CTCGCCCGGGATCCGGAGCTGCGGTTCACGCC 2331410 29 100.0 32 ............................. TGCTACCAGTTCGTCAACGACGCCAGCACCGA 2331471 29 100.0 32 ............................. GACCACGACGTGCGGAACGGCCGCGACGTTGT 2331532 29 100.0 32 ............................. AGTCTCCTGTTTTTTTAGATGGCCGGTCACCG 2331593 29 100.0 32 ............................. ACCTCAGCCGGCGTCGACGGCTTCGAGCGGTT 2331654 29 96.6 33 ............................G GTGGTGACCTGTGACGCTCGTTCTCGGCGAACT 2331716 29 96.6 32 ............................A GGGGGTCCCCTGTTATGAGGGCGAGTTATTAG 2331777 29 100.0 32 ............................. ACGGGCGGAACATCAACAGCACCATCCATGCC 2331838 29 96.6 32 ............................T GGCTCGTCGGTGGTCGGGTCGCGGCAGATCGC 2331899 29 100.0 32 ............................. CGTTCCCCTTTTCCCACACCAGATCCTGGCTG 2331960 29 100.0 32 ............................. GACGGAGACCAGTCGCAGCAGTCCCACTCCCA 2332021 29 100.0 32 ............................. GCGCCACCGGTGACGTTGGCCCAGCTGTCGGT 2332082 29 100.0 32 ............................. GTCCTGGAAATTAGCGGCGGCGTCCATTTGCA 2332143 29 100.0 32 ............................. ACGATGTTGCCGTCTCCGTCAACGGTCAACAA 2332204 29 100.0 32 ............................. TCGGTCTGCTGGACGTCCATGGTCGGCAGCCA 2332265 29 100.0 32 ............................. GTCTCCCATTCCCCGTCCAAGGAGACCCGGAA 2332326 29 100.0 32 ............................. CAGCTGCGTCAGCGCGGCGTCCAAGGCCTTCG 2332387 29 100.0 32 ............................. GCATAGGCGCTGTGGCCCAGCCCGAGCTCGGT 2332448 29 100.0 32 ............................. GCGACCGAGGCCAGCCTGCTCGGTGGTGACTG 2332509 29 100.0 32 ............................. CTGACGCTCCCGCTGTCCGGCGCGGTCAGTCG 2332570 29 96.6 32 ............................G GGGGATGGATTCAAGCAAGAGCGCGAGAAAGC 2332631 29 100.0 32 ............................. TCGCCGGCTCGGGCCTCAAGGCCGCGCAGCAG 2332692 29 100.0 32 ............................. GTCAAGGAGTCCCTGACCTTCCTGGATGCGCT 2332753 29 100.0 32 ............................. TCCTCGACCGACACCACTTCCACCGACCCGTC 2332814 29 96.6 33 ............................A CGACGAGACCGCCGCCGCACAGCGCCCGGACGG 2332876 29 100.0 32 ............................. CCCGGTCCCCTCCGACCACTCGGCAACAACGT 2332937 29 100.0 32 ............................. CGGCACCGGCGGCCGCCGTGGCGTCGACGGGG 2332998 29 100.0 32 ............................. GTCGACGGCGACGTCAGCGGCCGGGGACACCG 2333059 29 96.6 32 ............................G CTGCTCGGCACCACGCTGAACTCTCGGCGGGA 2333120 29 100.0 32 ............................. CGCCACCCATCAGCAGGATGCGCATCACGTCG 2333181 29 100.0 32 ............................. AGGCTGTGCGTGGCCCGCTCACCGCCGGACAG 2333242 29 100.0 32 ............................. GCCACCGAGTCGGGGGCGGTGATCGTCCAGGC 2333303 29 100.0 32 ............................. TCGGAGAAGTCCATGAAGTTTTTGCCGTCCCA 2333364 29 100.0 32 ............................. CAAGTCCTCGAACCGCCACCATGACGATTCGG 2333425 29 100.0 32 ............................. CAGTGGAAGCACCTGCTGTTCATCGACCGCCC 2333486 29 100.0 32 ............................. CGGTGGCGGCGGCCCTAATTGGAAATCTGGGG 2333547 29 96.6 32 ............................T GTCCTGCCTGCTCAGGGGCAGCGGTCGGTGAT 2333608 29 100.0 32 ............................. CAGTCCGGCGGACAGTGCGGTCTGCAGACACC 2333669 29 96.6 32 ............................T CGTCGCCGGCCGCGAGGTAGCCGGCGAGGGTG 2333730 29 100.0 32 ............................. GCCCTGGTTCTGCGACTGTCCAACCGGGGCTC 2333791 29 100.0 32 ............................. AGGTCGCGTGGGCTGGGCGGGTCGACCAGGTC 2333852 29 100.0 32 ............................. GCCAGCTGCCCCGACTCGCGATAGGTGGAGTC 2333913 29 96.6 33 ............................G GCCGCGATCGCCTTCTCTGCCATGTCGGCCAGG 2333975 28 96.6 32 .....................-....... CGGTCCCGGGCCTCGTTCAGGATCGGGATACC 2334035 29 100.0 33 ............................. CGCTGGTCACCGTCCCGCGCCGCCCACCTGTAC 2334097 29 100.0 32 ............................. AACGCCTCATAGCGGGCGAGCCGAGCAGGGAC 2334158 29 100.0 32 ............................. GCACCGCCGTGCACGTGTGGCACGACAAGCGC 2334219 29 100.0 32 ............................. CGGGCGGCGGTGAGCGTCACGGTGTGGCAGCC 2334280 29 100.0 32 ............................. ACGAGCCAGGGGTACATGCAGGTGACCTCTGA 2334341 29 100.0 32 ............................. GGCGGCAGCTCGCTCAAGGACCAGGTCAGCCG 2334402 29 100.0 32 ............................. GTGCGGGTAGTGCGGGGACAGCGGCCACAGCG 2334463 29 100.0 32 ............................. CAGCGCCGCTGCCCGCGTCGAGCAGAGCAAGC 2334524 29 100.0 32 ............................. GTGCTGCGGCATGTGCTGGACGTGTACCGCTC 2334585 29 100.0 32 ............................. GCCCGCTTCAGGATCCGATGCACCTGCAAGAT 2334646 29 100.0 32 ............................. AACGCCTCATAGCGGGCGAGCCGAGCAGGGAC 2334707 29 100.0 32 ............................. AAGAAGCACCTCTGCCGGCACGCACGACACGC 2334768 29 100.0 32 ............................. AGCGGCTACGACCTGCCACCGAACCCGCCCAC 2334829 29 100.0 32 ............................. ACCCGGCCGACCTGCCAGCTCTGCTGACATCC 2334890 29 100.0 32 ............................. CACATCCACATCAGCGGTCACCGCCCCGGTCC 2334951 29 100.0 32 ............................. CGGTCGACGCGCCCGAACCCGACCCGGAACCC 2335012 29 100.0 32 ............................. GCGCTGCGGGTGGCGGGGCATCTACTGTCCAG 2335073 29 96.6 32 ............................G GAGCAGGTCGAGTCGCGGACGTTCATGGTGCC 2335134 29 100.0 32 ............................. TGGTCCGATTACCCGGACGGCTGCAAACGCGG 2335195 29 100.0 32 ............................. GTTCTCGTGACCCTGTCCAACACCGGCCACCG 2335256 29 100.0 32 ............................. CGCCGTTGATGTCGAAGCTGGCGCGAGCCAGC 2335317 29 100.0 32 ............................. TGATGCCAGAGGAACCCGCTACCCGCCGGCAG 2335378 29 100.0 32 ............................. GACAGTGGTGTCTGCGCCAGCCGGGCCGCCGC 2335439 29 100.0 32 ............................. AAGCTTTCCCAGGCAGGGCAGGACGCCGGCTA 2335500 29 100.0 33 ............................. CACTCGACCGGGTGAATCCACACCAGCGCGGCG 2335562 29 100.0 32 ............................. CACTGCGGCGGCGCGGGCATTGGGCGGCCTGG 2335623 29 96.6 32 ............................T CGTCATCCCAGCCGGCGCGGTGCGCGAACCAC 2335684 29 100.0 32 ............................. TCCGCAGGCAGCCGCCGCGACGGAAACACGTC 2335745 29 96.6 32 ............................G GAAGCGGCACAGCCGGCAGCCGACCCGGTCAC 2335806 29 100.0 32 ............................. GCCGTGACCACGGTGGTCGGCATCGGCAGACC 2335867 29 100.0 32 ............................. GGTGACGGCGATCGTGCGGCCGGAGCCCGTCG 2335928 29 100.0 32 ............................. ATCTTCCAGTTGTTGGCGGTGTACCTCGCCAA 2335989 29 96.6 32 ............................G CGGCTGCGGTGGGGTCGCCGACTGTGGACGTG 2336050 29 100.0 32 ............................. CGTGTGGAACGTGCCCACCTCAAGATGCCCGG 2336111 29 100.0 32 ............................. TTTTGGAAGCCGCTTTCGGCCTGGCCGAGGCC 2336172 29 100.0 32 ............................. ATCACCAACGACGAGTGGCGGGGTGTGTCGTC 2336233 29 100.0 32 ............................. GCCAGCACCGGAACCGCCCCGCGTCGCCGACC 2336294 29 100.0 32 ............................. CGGATGTGCATCGTCTGCGTCATGCCGTAATT 2336355 29 96.6 33 ............................G TGCCGCACCAACCTCGCGCACATGGGCTGGCCG 2336417 29 100.0 32 ............................. GCGCTCACGAACCTACGACCCGCTCACCAGGG 2336478 29 100.0 32 ............................. ATCTAAGCAACGTCATCACCAATTTGACTGAC 2336539 29 100.0 32 ............................. GACGAGCCCGTGGCCCTCATGGAGGACACCAA 2336600 29 100.0 32 ............................. CTCCCTGGGAGTACTGCTGGAGCACGTCGCGG 2336661 29 100.0 32 ............................. AAGCCGAACCCGTTCTACACCCGGCAAGAGCT 2336722 29 100.0 32 ............................. CGCGCCCCCGTCCCCTACGTCGGACGCGGCGA 2336783 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ==================================== ================== 116 29 99.4 32 CTGCTCCCCGCGCACGCGGGGGTGATCCC # Left flank : TCTGGGACGAGGACGGATACGAACTCACCAGCGGACGCAATTACAGCACCGAAGTCGACTTCTGATGACCGTCATCATCCTCACCGCATGCCCGGAAGGACTACGCGGCCACCTCACCCAGTGGCTCCTCGAGATCTCCGCCGGCGTCTACGTCGGCCACGTCAACAGCCGAATCCGGCACCGACTCTGGACCAAGGTCATCGAGATGGCCGGACCAGGACGGGCACTGCTCGTCTACCAAAAGCCAAGCGAACAGCGGCTCAGCTTCGACGTGCACGACCACCACTGGAACCCAGTCGACTTCGACGGCATCACCCTGATACGCCGACCCACCGAGCGGAAGACCCACAACCCCGCCCTAGCTCAGGGATGGAGCAAAGCCTCAAAGCGCCGACGCTTCGGACGACGCGGCGCGGGACGCGGGGACCTCTCGGGCGGCAGCCCAAAACAAAGTGAACAAAATCGGGAAAGTTGATCTCTAAAACTGCAGGTCAAGAAGC # Right flank : TTTTCCAGCCTCGGCCCGGTCGAGGCGCGACGACGAGCTGACCGCGATGATCGAACAGGTCCACGCGGCCAACTACGGCGTCTACGGGGCCCGCAAGATCTGGCACGAGCTGCACCGCCGAGACGTGCCAGTGGCCCGGTGCACGGTCGAACGGCTGATGCGCGAGTCCGGACTGCGCGGGCTGCTACGCGACAAGTCGCCGCGTACGACCCGGCCCGCTGCCGAGACCAGCAGGCCCGCTGACCTGGTCAACCGCGACTTCACCGCGGTGCGGCCGAACCAGCTGTGGGTAGCCGACCTGACCTACGTGCGCACCGCCGTGGGCTGGGTGTACGCCGCGTTCGTCCTCGACGTGTACTCCCGGATGATCGTCGGCTGGCAGGTCTCCACGTCGCTCTACACGGATCTGGCCCTCGACGCGCTGAAGATGGCGATCTGGCGCCGTACCGCCCAGGACGCTGATCTGGGCGGACTCGTGCACCACTCCGACCGGGGAGTCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [7-6] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2337660-2338115 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJJY01000002.1 Micromonospora sp. Llam0 Ga0236288_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2337660 29 96.6 32 ....A........................ ACCCGCGCGGTGGTGCGCATGACGACCGTGCC 2337721 29 100.0 32 ............................. AGGATGCAGTCGGCCGGGATGGTCGGCTCACC 2337782 29 100.0 32 ............................. GTGTCGCCCAGCAGGGTGACCTCGTCGTCGGT 2337843 29 96.6 32 ........................G.... TGTCCACCGCGAACCGGCACATCCGCGCTCTC 2337904 29 100.0 32 ............................. AGCTCGAAAGCTTGCGGGCCCTCGAATCCGAT 2337965 29 100.0 32 ............................. GGATGGGCCTTCCCTCCCGGCGCCGTCCAGTG 2338026 29 89.7 32 ............A.............GT. GGCTGGCCCTGCGGCTGCGGCGGCTGGTTGAG 2338087 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.9 32 CTGCTCCCCGCGCACGCGGGGGTGATCCC # Left flank : GACGTGTACTCCCGGATGATCGTCGGCTGGCAGGTCTCCACGTCGCTCTACACGGATCTGGCCCTCGACGCGCTGAAGATGGCGATCTGGCGCCGTACCGCCCAGGACGCTGATCTGGGCGGACTCGTGCACCACTCCGACCGGGGAGTCCAATATCGAGCGATCCGCTACAGCCAGCGGCTCGCCGAGGCCGGCGCGGTTGCCTCGGTCGGTTCCAAGGGCGACTCGTACGACAACGCGATGGCCGAGGCGTTCAACTCCCTGTACAAGGCCGAACTCGTCCGCAACAGGGGTCCGTGGCGCGGCCTCGACGACCTGGAGATGGCCACCGTCGAGTACATCGACTGGTACAACAACCGGAGGTTGCACGGCGAACTCGGACATGTCCCGCCCGCCGAGTACGAAGCGCTACACGCGATGACCCAACCGGTCACCACACCCCTGAAAACCAGATAACCGACTCTCCATCAAACCCGGGGCTTGACAACTGGGTGGAGTGG # Right flank : CGAACGGCCTAGTGTCCCGTGATCCTGATGTGTTTACTTGGCGTTGTTGTCGACGAGTTGCTTGATGCTGGCCTGTACGAGTTGGACTTTGGCGAGGATCTCGTCGGCGGTGGCGGTCCATTGGAACGGGCGGGGGTTGGCGTTCCAGGTGGTGATGTAGTCGCGGATGGAGCGGATCAGGACCTGGACGGACGAGAAGGTCCCGCGGCGGATGGCCTGTCGGGTGATGATGCCGAACCAGGTCTCGTCGGGTAGCCCCGGCGCATTGCTGCGCCGGGGCCCCCTCAGAACCGGCCGTGCCCGCTTTCCGGGCAACCGGCTCAAGCAAGCCCTGGAGGCTCGCGGGTGGGCGGAAGTGCTGGGCTGCCGTTGCTGGTGGTCCGGCGGTGGCAGTGGGTGTGTATGAGGCGGTTGGCGACGCGTTCGTCCGGTGTTCCCGCTCCCCAGACGGTGACCGCGTGTCTGCGGACCGCTCTGCGGGTGGCGGTGAGCCATTGTTC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 2558732-2560077 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJJY01000002.1 Micromonospora sp. Llam0 Ga0236288_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 2558732 36 100.0 37 .................................... TGCGGGCTGCGATGGGAAGAGATGGGCGGCCTCGACC 2558805 36 100.0 37 .................................... TCATCGCACCCACGGCAGCCCGCGAACCGGACGTCCC 2558878 36 100.0 37 .................................... GCCGCCCCCATCGTCGTCGGCTGCACCGCCGACCTGA 2558951 36 100.0 34 .................................... GCCAGGCGCGTTGGCACCGATCATCTGCCGTTCG 2559021 36 100.0 38 .................................... AGCTTGCGACGAAGGTCGGGGCTGCCATTGTTGACTCC 2559095 36 100.0 34 .................................... TCGATCGTGTCTCCGCCCCGAAATTCGTCGCCTT 2559165 36 100.0 38 .................................... TCCCACGGGTCCGGGTCGGGCTCGGTGGTGGTGTCGTT 2559239 36 100.0 35 .................................... TTGCGTGCTGCCGACTTGATGGACTTGAGTCGGAT 2559310 36 100.0 44 .................................... GGGCTACGACACCGGACACCGAACCGTCGAACTGCGCATGAAGG 2559390 36 100.0 35 .................................... CCGACGCCCCGGGAGACCACCACGGTCGCCCGGGG 2559461 36 100.0 37 .................................... ACAGAACGATTAGGCCCGGCCGGTTCAGGTTGACGTG 2559534 36 100.0 37 .................................... GACCTGGTGCCGGTCGAGGCCGAGGACCTGCAGTTCC 2559607 36 100.0 37 .................................... TGATCGGACTCAAGGTCCGGGAACTGCTCAAACTCCA 2559680 36 100.0 37 .................................... GTCACGACCAGCACCGGCACACCGTCCGGCAGATCAT 2559753 36 100.0 33 .................................... GGGGCGACCCGCTCACTGGTGATGCCGGCCGAC 2559822 36 100.0 38 .................................... TTCCTGGCGTGATCCGCACGGGACTCTCAGTGCGTGTC 2559896 36 100.0 36 .................................... CCCGTGCTGCGCTGCCTGCGGGGTAGTGCGCCGCCG 2559968 36 100.0 37 .................................... ATGCCGCTGCCCTGGATCACGGTGATCAGGCCCTCGT 2560041 36 86.1 0 ..........C.................GG...AA. | C [2560073] ========== ====== ====== ====== ==================================== ============================================ ================== 19 36 99.3 37 GTCGCAGCTCTCTCGGGAGCTGCCCTTCATTGAGGC # Left flank : TCCGCGTGGCACTCCTTCGTCGAACTGGCCAAGCAGCGTCACTGACCACTGACGCCTACCCCGGAGAGACAGCCAACGAGCGCCGACCCCGCCTCAGCAGGGTCGGCGCTCCAGGTCTGCGTCCGGGATGTAACCCAGGCCGGCCTGGTTTTAGACTGCCCTTCTGTCAAGAGTGCGTGCGCTGGCTCGACGGTCCGGCCCGGGCCGTCGAGGTGGGGCCTACGCCGGTTGAGGCGACCAGGAGGGTCCGCACTGCTCGCCTGACAGTGGGGGACCAGGGCCGCCTGATTGCCGGCCGGCCCGGCGGTTCAGCTCCCCGCCGCGAAGGCTCTGTCATGACGGCCGTGAGCGCGGACCCTTCGCGGAGCCATTTCCCCTGCTCAGGTATCGTTCTGTAGTGGACAATGGTGGCGTTTGCGTTGTCGCAGCGCCCTCTGCTGGCGGACCTCTCGCGGACCCCGTGCTCCGCAGCAGGTCAGGAGGGGTAGAATTCCGACCCA # Right flank : CCGCTCTCCGGCTCTAGCGAGCCCGGAAGGTGGCTGCGTCGAGGTGAGGATTACGCACGTTATTCATGCGTTTTAACGTGCGTAATCCTCACCTCGAAGTGGGCGGAGTATGGCAGTAATCGGACGACAGTGCCGTTGGTGAGGACGCGCCTACACCGGCGGCGAGGCCTTGGCTTGATCGCCCTCTCGTTGACGGAAGGCAAGCAGGTCAGCCGCATGGGTAGCCGGATCGCCGGAGTCAGCTCCCGCATGGCTAGGAGCGCCGCGATCGGGCCGCGACTCAGGGCCGCGTCCACGGTCTGCCGGTCACCAACCGACAACGACTGCTAGACCTGACCGGCCGTGCACATGCTGCAGAGCCCACCGATGTGCTCAGCGTCAGCGACCGAACATCGCGCCGTGCAGTCGGGACAAGTGAAGTGGAACATGACCGGATCATGCAGCGGACGAATCCGAGCCAGCAACCGTGTCGACGACATGTGAAATTGGCTCTGGTGACG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGCTCTCTCGGGAGCTGCCCTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 1525900-1526245 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJJY01000001.1 Micromonospora sp. Llam0 Ga0236288_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ============================================ ================== 1525900 38 100.0 44 ...................................... CCGTCCTAGCTCGATTCGTGCGATCCGGTTGGGGGCACTCGCCA 1525982 38 100.0 39 ...................................... CTCAACGCCATGCCGTCGACGTAGGCCGTAACGCTGGCC 1526059 38 100.0 35 ...................................... GAGGGTGAAGACACTAAGCTCTCGGCTACCGAACG 1526132 38 97.4 40 A..................................... TCGGAAAGGTGTCCGGTCAGGGGGGACTCGGCTTGCTCGA 1526210 36 84.2 0 A...........................-A..-.CC.. | ========== ====== ====== ====== ====================================== ============================================ ================== 5 38 96.3 40 GGTCAGAAACCACGTCACGCCCAAGGGCGTATAGAAAC # Left flank : AGTGGCGTTGACGACGGTGCTGGTGTGCTACGACATCTCGCGGGACAGCCGCCGGCTGCGGGTGGCGGCGGCGCTGCACCAGTGGGGCGAACGGATTCAGCGCAGCGTCTTCCTCTGCCAGCTCGACCGGGCAAGGTTGCCTCGACTTGCCGCCCGGTTGGAGGCGATGATCGACGTGGAGACGGATACGATTCACATCGTGCCGATCTGCGCTGGCTGTCAGGATCAGCTGGTGGTGATCGGTCAGCACCGGATCGACCCGGAGCCGCCCTACTGGGTGGTGCTGTGATGAAAGGTACGGAGGGTGCAAGGTAGGTCGGATGGCGGACGAGTCGGGCCTGGTTAGGCGATCATGAAAATCGGCGGTACGCCGTGCAAGCCCCTGAGCTGCGGAAACGTTCAGGAACGTGACCGGCGTCACCCGTCGAATGTGGAGCTCTGGAGGTCGCCGTGCAGAGGGCGTGCATCTGTGCTGGTCACGGCCCCGCCAGAGCGGGTAG # Right flank : CGTAGCCTAGGTTGATCTTGATGGTGGCTGGACCCGATGGATGTGGATGGTCGGTGGACGCTGGTGGCGGATGCTGGCCGGTTCGTGGGGTTTCTTGACCCGGTACTGGTTGTGGCGGGCGCGTTTGACCGCGCGGGGGCAGGTGCGTTCGCGTCGGGTGGGGATCAGGAGAGCGGCGATCCGGGCGAGGTGGGTCGGTAGCTGGTCAGCCCAGTCCTGAGCCTCGATCCACCGATGAAGGTTTGACCGGCAGGACCCCGGCTACAGAAAGTGCCCTCTGAACTGGAAGGATAGGAGTTCTGACGCTTCTATCACTCGGTTCGAGAGGGCACCTCGCAGGTGAGAATACGCCAGGACGCGCCGGTGGTGCGCGCGACGTTCGACGATCCGAATCTGGTGTCGTGTGCCGGTCTCGTTCCGGTGATGCGCCTTGCCGAGCAGGCCGGTCTGCACGACGCGGTCGCAGACCGGGTCAGGCTACCGACGGACAAGGGCGCGAA # Questionable array : NO Score: 2.87 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCAGAAACCACGTCACGCCCAAGGGCGTATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.30,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 1529652-1530463 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJJY01000001.1 Micromonospora sp. Llam0 Ga0236288_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 1529652 37 100.0 38 ..................................... GTGTTGACCGGCCGCCACGGCTCATCCGGCACCGCCAT 1529727 37 100.0 42 ..................................... CGGTTACCTCCACATTCTTACCTGCGTGGCGGGCGAGGGTGT 1529806 37 100.0 38 ..................................... AACTCGGCCAGGACCGGAACCGGGTGCGCACCAACTGC 1529881 37 100.0 40 ..................................... TCGGGGTTCAGTCGGAGGGAAACGGCGTCGCTCATTTCGG 1529958 37 100.0 41 ..................................... CGGCGTCGATGGCCTTTTCGGCCCAGTCGTCGCCGGCGCGG 1530036 37 97.3 43 ..........................T.......... TCGGTTGCACTTGGAGCTGATCGACCACCGGCGCGGCACACGC 1530116 37 100.0 40 ..................................... CGCTCGATGGCGGCGGCGGTGGTGTTGGCGGCTTCGACGA 1530193 37 97.3 44 ...................................G. ACGAGGTCGGTCGGCGGCACACGGCACAGCGCTTGGCGCAGCTT 1530274 37 100.0 41 ..................................... GGCGACGGTTGGTCCGCCGTCTGGTCCACGGGGGCGGTGAC 1530352 36 94.6 39 .....G........-...................... CTGTTGCGGTGGACGGTGACCCAGGTGTCGTGGTCGGCG 1530427 37 81.1 0 C..G.......A......G.......T..G....G.. | ========== ====== ====== ====== ===================================== ============================================ ================== 11 37 97.3 41 GTCAGAAACCACGTCACGCCCAAGGGCGTATAGAAAC # Left flank : ACCCGGCGGCCCAACCGTTTCCGCGCCTGGCTGATGGCACTCGAGGTCGGCACGCTCCACGCCGCGTCCCAGCACCCGAACCGGTCCAACGACCCGGTGACCCTGGTCGCGACCTCGGTGTAGTCATCGTCGGGGAACAACGCCAACCCCAACGTCAGGTAGGTGCTCACGTGCGCCGGCAGTTTCCCGTCCGACCGCTGCTCCCGCACCCCGCACACCTCGATCGCGGCGTCGACCTCCTCCCGCGACACCTGCGAGATCAGCACCCCGAGCGTCACCTGATCCGGCCGTACCACTGGACGGTCCACCACATCCACCGACATGACCCGTGATCAAAACAGTCAGCCGAGCCGTGGTCGTCCCGCCACGCCGCACCGCCCAGGAGTCCACATCAAACCCGCAGGTCAAACCCAAGATCAACTTAGGCTACGTGGCATTGCGCCCAAGGGCGTATAGAAACTACATCCGGGACAGTGCCGGATCGACGGTCAGCTCAATCT # Right flank : CTCGTCAACGATGATCGTGGATGCTGTGGCTGAGTCTCGCTGACCGGGTCAGAAGCCGTCTGGCGGCTCGGTGTTGCCCGATGCACGAGGAGCGCCCGCGCTCGCGGCACGGTAAGGTCCGGCGGCATGTACCCGGACAATCGGCGCGTTGCGCTCGTCGCTGTGGTCGGCGGCTTCCTGCTGGGGTTCGTCGACTTCGTATGGATCAAGTTCATGCCCTGGTGGCCCCTTGCCGACCTGGGCAACTCGTCTGCGGTGTGGGCGGTCGCTGCGTTCTTCTTCGGCTACTGGATCCGTACCGGGTGGCTGCGGGCTGCTGCCGGTGCCGCCGCCGGACTGGTGATCGCCGTCCCCGCCTACTACGTGGCGGCGGCGCTGATCCAGGGCGACGACTGGTCGCTGCTGTGGGCGCCGACGTCGCTGCTCTGGATGGCCTTCGGGGTCCTCGCCGGAGTGGTCTTCGGCGTAGGCGGTGTCTGGGCACGCGGCTCGGGCTGGCG # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAACCACGTCACGCCCAAGGGCGTATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.30,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 3 2345046-2342180 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJJY01000001.1 Micromonospora sp. Llam0 Ga0236288_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 2345045 37 100.0 37 ..................................... TGAGTGACGGTGTGCCCGGCGGCCACAGCAGCGTGGT 2344971 37 100.0 37 ..................................... GCCTCGGTCCTTGATTACGGCCTCGGCGTCGGCCAGG 2344897 37 100.0 39 ..................................... GACCAGCCTTTTGGTGTAGTAGATCTCCCACTCAAGGAG 2344821 37 100.0 37 ..................................... GGCGGCGGTGGCCGGCCGATCGTTACGATGTACGGAG 2344747 37 100.0 37 ..................................... ACCCTGCCGGCCGGCTACCAGCCGGCGTCCCGCCGCG 2344673 37 100.0 40 ..................................... GCCGAGCGGGTGCGCACCTCAGGGCACGGCGCCCTGAAAG 2344596 37 100.0 40 ..................................... GACCTGCACCTGCGCCGGGTCGGCCAGATGCAGGGCTTCG 2344519 37 100.0 41 ..................................... TCGCCCCCGTCCGGGCCTGCCTGTCACGCGGCGCCCGACCG 2344441 37 100.0 36 ..................................... GCCTCAAGCTCGGCCAGCGCGGACTGGACCAACTCG 2344368 37 100.0 37 ..................................... AAGAAGACCGTCGCCATGGTCGGGAAGCTGGCGGCGA 2344294 37 100.0 38 ..................................... CCCGGCGAGGTGACGGTTCGTCTGGGCATCGTCGCCTG 2344219 37 100.0 34 ..................................... CCGTCCGCGACGGCGCCGGCAACGTGACCTGGCT 2344148 37 100.0 37 ..................................... CGCCTCCTGCAGTTGCGGCTTCAACCTGCGGTTGATG 2344074 37 100.0 38 ..................................... ATCGCGGCGAGCTCGGAGGGCGACGTCGCGTCGGCGCG 2343999 37 100.0 38 ..................................... TCCCATCCGAGCCGCGTCATCTCCAGCCCGAACCGCGT 2343924 37 100.0 35 ..................................... GCCGCGCAGCTGCACGTCTCACCGGCATGGCTGAA 2343852 37 100.0 36 ..................................... CCTGCGCCCATCGGGGTGATCAACAACGGCAGGATC 2343779 37 100.0 39 ..................................... GCGGGCGGCCGTCCAGAAGTCGTCGGCGTCGTCGTCGAT 2343703 37 100.0 37 ..................................... CAGGAGACCTCGTCGACCTTGGGTCCGTCGTGCAGCA 2343629 37 100.0 40 ..................................... GACGCTCACCCAGTCGGGGGCGATGTCGCGGCGGGTGATG 2343552 37 100.0 38 ..................................... CCGATTGCCTGAAACCCAACCGGCAACCCGGTGTCGGC 2343477 37 100.0 37 ..................................... TTGTCCCGGCCGCCACCAGGGCCGCCAGCGGACCGGG 2343403 37 100.0 37 ..................................... GCCTGGTGGTGGCGCTGGAAGTGTTACAGCAGCTACG 2343329 37 100.0 37 ..................................... GACCACGCCGCGCTCGATGTGCACCGAGGCGATCGAC 2343255 37 100.0 38 ..................................... AAGGATGGTGGGGTGCACCGAATGCCAGACGGTCTATC 2343180 37 100.0 37 ..................................... CTCATGTCTCCCCATCGGCCCCCATCGAGACGAGCAG 2343106 37 100.0 37 ..................................... CGCTCGCGGCGACCGGCGTCGCCTGGACGCACGACCA 2343032 37 100.0 38 ..................................... GCCGCGGCGACGTCGCCCGTCTCGGTCAGGTTGGTCTT 2342957 37 100.0 37 ..................................... ATCTTGGTGTTGTTGGCTTGGGTTTGGATGACCGTCG 2342883 37 100.0 36 ..................................... ACCAGCTGCATGAGTCGCAGTGCGCGTACATCCAAA 2342810 37 100.0 38 ..................................... CCCCGCCACCGCCACCCGATGAGTCGACGTACGCCTTC 2342735 37 100.0 34 ..................................... GGGTGGCTAAGCCGCAACTCAGACTGGGTAGGGC 2342664 37 100.0 37 ..................................... CGAGACAGGCCGCTGGGTCGCCGAATCGCCAGAACTC 2342590 37 100.0 38 ..................................... TTCAGGTTGACGCGAACCGCCGAGGTGGTCGCGCTGGT 2342515 37 100.0 37 ..................................... GAGGAGTAGAGGAGAACAGCGGTGGCTGTACTGACCG 2342441 37 100.0 38 ..................................... TACCTGTAGCCAACTCGTTACGCATGTTACGCGGCGGA 2342366 37 100.0 38 ..................................... TCCTGAGCCGTGACCAGATCCTCGGCGCGACTGACCGC 2342291 37 97.3 38 .................C................... GAGACAACCGGCGCACAGCGGTCAAAAGTTGCCATAAC 2342216 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 39 37 99.9 37 GCTGCACCGGGTCCCCGGACCCGGTGAGGATCGCAAC # Left flank : GCTGCCGCTCGTACAGGCACGGCTGCTCGCCCGGCACCTTCGCGGGGACCTGGCCGCGTACCAGCCGTGGACGGTCGCCTGAAATGGACCTGCTCGTGACGTACGACGTCGAGACGACCACCCCGGCTGGGGCCCGCCGGCTGCGCAAGGTGGCGAAGATCTGCGAGGGGTACGGGCACCGCGTCCAGAAGTCGGTCTTCGAGGTGGTGTGCCGGGACGCGGACAAGGTCAAGCTGGTCGCGGCCATCGAGGCGGTTATCGACCCGACCCGCGACAGCGTACGGATCTATCGTCTTCCCGCGATGGCTCTCGACGACGTCGAACACCTTGGACGTCCCCGTGGAATCGACCCACGCGGCCCGTTCGTGATCTAGGAACCTCCGGTGAACACGAAATCCCGGGAGGTTCCGAACCACTACATCGGGCAAAAAGCCCGTATCGGCTCGCCTGCTGACCGGGAGTCAAGTGATTGCCTTCTATTTTCGCAGCTCGCGAGCCGG # Right flank : GCCGTGCAGTTGCCGCCGCGTCGACGCCCGCACGGCCGGCGACGGCCCCGGACGCGGCACGCAGTCGGGCTGTCCTGTCTCAACGAATGTGGTCCAAGGCTGCGGACCGCCGAGCAGGGGGAGACCAGATCCAGTGAGACGCTGCTATCCGGCCGGGTCTCGTCGAATCTGGTCTGTGCTGGCGGTTTGCGCCAGATCGTCTCGCTGAATCTGGTCTGTGGTTGCGAAAGTGTCCCTGTTGTCGGATCAGAGTCTTTGGAACCAGTCACGTGCGGCTTTGACTCCGCCGTCTGGGCCGAGGGCGACCATCAGGGCGCTGCGTGCCTTGCCGGGGGCGAGGCTGCGGGCTCCGATCGCACCGACATTGACGGCAAGGCCGCTGCCCAGGGGCAGCTCCGCCAGGTCGATGTCGCGGGTGCGGCATCGGGAGGCAATGACCACGGGGATGTCCCATTCGGTCAGGTCGCTGATGGTGGTGAGGAGACTGACCGGGACGTTGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCACCGGGTCCCCGGACCCGGTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-14.60,-14.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 4 2358774-2357465 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJJY01000001.1 Micromonospora sp. Llam0 Ga0236288_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 2358773 37 100.0 37 ..................................... GCCCCAGTGTCGTCGGTGCTCGCGGTGCCTGACCTGC 2358699 37 97.3 37 ........................T............ CGGCCCTTGTGCGGGTCGTCGATGATCATCACATCGG 2358625 37 100.0 35 ..................................... CGCATCTCTGTCTCCTGTCTCGGTTGGAAGGTGCC 2358553 37 100.0 39 ..................................... GCCGGCGACAGGTCGATCGGCGTACCGGCCAGGGTCGGC 2358477 37 100.0 41 ..................................... GACGTCGGTGCCGCCGCCCGATGCCCGGGTGTACCACAGAT 2358399 37 100.0 38 ..................................... GGGGGCCGATCCTGGCGGCGATCCGTCAGGGGGTGTCG 2358324 37 100.0 38 ..................................... GACACGAAGAACATCGGCCGGGACGCCTACTCGGGCAC 2358249 37 100.0 35 ..................................... ATCTCTGCGCGGTGCTACCGGATTAACACGCAGTA 2358177 37 100.0 37 ..................................... AAGATCAGCATTACAACGGCGTGCACGTGCATTGCGA 2358103 37 100.0 38 ..................................... GTCTGCGCGCTGATCTGATTTCGACGATGCCCGTGGAC 2358028 37 100.0 38 ..................................... GCGTCGGCGACGGGGGTCGCATCGACGTGGTGACCAGC 2357953 37 100.0 38 ..................................... CGGCATTGATGATCATCCGGCGGCCGGACTCCGCTAGT 2357878 37 100.0 37 ..................................... CGCAGCCAGGTGATCAGGTCGCTCACGGCGTCACTCC 2357804 37 100.0 38 ..................................... TGCGTCGGCGTGACCACCGTGCCGCCGCCGTCGTTGCG 2357729 37 100.0 39 ..................................... TGTGACAGCGTCCGGAACTTGTACGCGTACCCGATGATC 2357653 37 100.0 38 ..................................... TCCGAAATCGGCGGCGTCGATCCGGATGTGGTGTCGGA 2357578 37 100.0 40 ..................................... ACGTCGTCGACTACGCACCCCAGGCGCTCATCCTGCGCGC 2357501 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== ========================================= ================== 18 37 99.7 38 GCTGCGCCGGACCTCCGGGTCCGGCGAGGATCGCAAC # Left flank : GGCCGCAGGCGCGGGCGACCGCGACCGGCAGCGCGCCGATCGAGGCGGGCTGGTCGACCACGGCCAGGATCCGGCCGTGCCGGGCGAGTTTGTCGAACAGTTTCCGCAGCCCGGCTTCGGTGTTGGGCAGGGTCGCGTCGTGCAGCCTCTTGCCCTCGCGGTTCAACGCGACCGCGTGGTGTCCTTCCTTACCGACGTCGAGTCCGATGAAGACGCCGAACCCGTCGTGCACAGCTTGCCTCCTCACGGCGATGGCCTGGCTCGGCCGCTGGTCACGGCGCCGGACTGCCGGCATCCACGTTACGGAGAGACCTACCCCGCGACGGGGTGGCCGGGTCCCTATCAGCGGTCCGCCGACGCCACCCGGCCCGGCGACAACACCCCCCGGATCATGCGTACGACAGGGGCATTCAGTCATACCGAGCCGGGCGACCGAGCCGTCCCCGGCTGGGGACGATCAAAAAGGTAACGGGGGCGTTTGACATTCACCTCGCCCAGTA # Right flank : GCCGGACGTGTCCGTCGACTATTCGGTCGGTGGACCGACGAGCTGGCGGATCTTGTCCAGCGTCTCCTGCGCGTTGTTGTCGGCAAGCTGGCGCAACACCTTGGCCGTGCTCCTGCTGGGGTTGAGAACCGCGTTGACTACGGCAGCTATAGGACCAGAGGCCAGGTACACGACCACCTCCTGCTCCTGGTATTGGGGCAGATCAGCCGGAAGATGCCGCAGTCCGTACGCTTCAAGCTTCTGACTGATCTCGGCACGTACGGTCGAGCCGAGTCGCCCAGCGCCCTCGATGTCCCGCAGCACCTGTGCAGTCGTACCGAGGACCCCGCCCTCATCAGCCACCCGCCGACGCAGTTCCTCATAGCTCGTGGGGCTCATCCTGCTGGCTGGTTCCGGCGAGAGCATGGCGTCCGGCGGGTCTACTCCAGGTCGAACTCGGCGGTGGCGACATCCTTGTCCAGCCGCAGCAGCCAGGACGCGTCGATCACTCCGGCTCCGGC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCGCCGGACCTCCGGGTCCGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-16.80,-19.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 5 2366326-2360273 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJJY01000001.1 Micromonospora sp. Llam0 Ga0236288_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 2366325 37 100.0 38 ..................................... TGCTGGAGTTCGTTCCAGTCGAGGCTCATCGGTTCGGC 2366250 37 100.0 38 ..................................... CAGGCGGGTGCGGACACCTGCGGTACGGCCACGGGAGT 2366175 37 100.0 38 ..................................... GCCGAACCGGACCCGAGTAGACCCGAGACGGTTATGTC 2366100 37 100.0 38 ..................................... CGGACGAGCATCTGGGGCAACGTCCAGTGTTGTTGCAG 2366025 37 100.0 37 ..................................... CATTCGGTGCTGCCGCCGACGAACACGGCGTCGATCT 2365951 37 100.0 38 ..................................... ATGTACGCGGCACCGCGCGGGGTGAGTTGGCCGCCGTC 2365876 37 100.0 36 ..................................... GGTTCAACGCCGGTGACTAGATACGTGCTGATGTTG 2365803 37 100.0 36 ..................................... AACGGGGAGAGTAGTGTTTTGGTTGTTGGAACACCA 2365730 37 100.0 35 ..................................... CTTGGTGTTGTAGGTCGTGATGGTGGCGATCGACC 2365658 37 100.0 37 ..................................... CACTGTTAATGGGCGGGTTGCGGGTTCGAGTCCCGTC 2365584 37 100.0 37 ..................................... GGCCGCGACGTGCCTAATCGACGGGTTGCAACTGTCG 2365510 37 100.0 38 ..................................... CGCTGGGACCTGGTCACCGGTTTGGATGTGCGCGCCGA 2365435 37 100.0 35 ..................................... GTCGCGGATACCGCCAGTGCGGCGGTGCGGCAGTC 2365363 37 100.0 36 ..................................... ATCCACCAAGGCGGCCCGCAGCAACTCCGGATCGTT 2365290 37 100.0 37 ..................................... GTTGCGGTCCGGCGGCCCCTCAACCCCGGCCACATCC 2365216 37 100.0 37 ..................................... TCGGGTCAGGGGTGACCAGCGATGAGAGGACTCCGAC 2365142 37 100.0 38 ..................................... GCGCACGCTCTCGACCGCCGACACAACCGCGACAACCC 2365067 37 100.0 37 ..................................... TTCAACCAGCGGGTGCTATTCCATGCCGGCGACCCCG 2364993 37 100.0 37 ..................................... GAGTGAGCCTCAGTCGTTACTTGCAGCGCACATTCGA 2364919 37 100.0 37 ..................................... GTGGAGCACGCCAAGCAGTTGGGCCTCGACGAGGACG 2364845 37 100.0 37 ..................................... CAGCGGCGCGCGCGCAGGATGGCTGGAACCGCGCTCT 2364771 37 100.0 39 ..................................... GCCGTGCGTCCGTCGTCGTGGCGCAGGTTCATCGACTCA 2364695 37 100.0 40 ..................................... TTGGTCGTCGCCGTCGGTCGCGGTCCAGATGGCGTAGTAG 2364618 37 100.0 34 ..................................... GGGGAAGCGGTTGCCGCACTGCATCAGCGCCTCC 2364547 37 100.0 36 ..................................... GCTGCGCAGCTCACCGTGCCCCGGGCTGACCGGTGG 2364474 37 100.0 38 ..................................... CTCATCCCGGAAACCCTGCGCGCCGAGCTGCTACGCGT 2364399 37 100.0 39 ..................................... CTCGTGCGGTGCGAGCGGCGACGACACCTGCAGCAGGTG 2364323 37 100.0 39 ..................................... ATGCTGGGGTGGCCTCCTCGGGCGTGGTGGGTGGGTTGT 2364247 37 100.0 39 ..................................... CGGTTGGCGGCGACAAGCCAGCCCAGAGCAACGGAGACG 2364171 37 100.0 38 ..................................... GTTTCCACCGCCTGCGCGGCGCACCCAGTTGCACAGCG 2364096 37 100.0 35 ..................................... GGGCGGCAGCCGCCGCGCTGCCCCACAGCTGCAGA 2364024 37 100.0 39 ..................................... GCCGACCAGATCGCTGGCGGTCGGCAACTGCCGCAGGGC 2363948 37 100.0 38 ..................................... GGACCTTCGTGCAGGGCGTCGGCGTCGACGTCGCCCTG 2363873 37 100.0 38 ..................................... ATCAGCACCTGAACCCGGTTGTCCTGGAGATCGGGGCG 2363798 37 100.0 39 ..................................... CCGCAGTGACAGGCCAGCCTGCTCGCGCAGCGCCCGCAG 2363722 37 100.0 37 ..................................... GGACGGCGGCACCGGCCAGCCGAGTTCGAAACACAGG 2363648 37 100.0 38 ..................................... AACCAGGACGGCGCGGGCGACGAATCGTAGGAGGGGCG 2363573 37 100.0 36 ..................................... CCTCCCGAAGGAGAAGCAAACATTATGAACCGTGTC 2363500 37 100.0 38 ..................................... GCCCGCACAGCACCTCGTCGATCTGGCCGCGCAGCGCT 2363425 37 100.0 41 ..................................... GTGGTCGGTCAACGGGACCACCATGCCCAGCTCCTCGGCCG 2363347 37 100.0 37 ..................................... GCCGATCGTGAAGCCGGACCGGCGCGGCGCCGCCCCG 2363273 37 100.0 39 ..................................... CCTGCCTTCTTGGCAGGTGCCCGTCGACGGCGGCGGGCC 2363197 37 100.0 32 ..................................... CCCTACCCCTACCCCTGCGATATCCGGGACAT 2363128 37 100.0 39 ..................................... CCCTTTGAACATCTCCGCGTACCGCTCGGCCACGCGGGT 2363052 37 100.0 40 ..................................... TCGGTCGAGCTGGTCATCGACGTCGCCCGGATGGACGCGG 2362975 37 100.0 36 ..................................... TGCTTTCGGTGGACCATTGGTCAGTGATCGAAAGCT 2362902 37 100.0 35 ..................................... TGCACAGTGGTTCCTCTCGTCAGTGGTCGGCCGCA 2362830 37 100.0 34 ..................................... CGGGCTGCGGTGGTCTGAGTGCGCCGGGTTGAAG 2362759 37 100.0 37 ..................................... ATCGCGACCGTCTACGCCTCGCAGACCTGATCGGAGC 2362685 37 100.0 39 ..................................... GCCGATGGTGAAGCCGGACCGGCGTGCTGCCGCGCCGGT 2362609 37 100.0 35 ..................................... AGGCCCGTGCCCGCGCTCGTGACGCCGGTCGACGT 2362537 37 100.0 39 ..................................... CGCGTGCAGCTCCACCAAGACGGCCTACCCAGCATCGTG 2362461 37 97.3 39 ........................T............ GCGTTGGCGAAGATCCGAGGATCGCCGATGCCCGAACCG 2362385 37 100.0 36 ..................................... CCGGCGGATGTCGCGGACCGCCTGGTCGCCGCCGCT 2362312 37 100.0 36 ..................................... TCGCGCTTGGCGTCTTCTCGGGCCTTACCGAGGGCG 2362239 37 100.0 38 ..................................... GGCATCCCGGCCGACTCGGAACATCCCTGGCACGAGGC 2362164 37 100.0 37 ..................................... TTAGTCCACTCAACGATTTGATCCCAGTACTTGATGA 2362090 37 100.0 38 ..................................... GCGCAGGTCGACTACAGGATCGAGGCGTCGTGGGGGCC 2362015 37 100.0 35 ..................................... CGGTCGTGGCGACGGGCGACGCGATCCACCACCAC 2361943 37 100.0 37 ..................................... GACGGCATCGCCATCATGAACGCCCTCCGGTCGCACC 2361869 37 100.0 37 ..................................... GGCGGCTCCGTCGCCGAGTCCTTGGGCATGCCGCCAG 2361795 37 100.0 39 ..................................... GCGGATGCCGTCGTCGACCTGTCGGGCCAGGCCGTGCCA 2361719 37 100.0 35 ..................................... CTGCATCCGCTGCCGCCAGGCGCGGGCGGTGCCGT 2361647 37 100.0 38 ..................................... AGGCAGGAATGGCGCGGCTCTTGGACCTGCAGCCCGAC 2361572 37 100.0 38 ..................................... AGTTGACCACCAGCGGTGATCAAGGGCAACTGACCCGC 2361497 37 100.0 35 ..................................... GCCATGGTGGCGAACACTGGCGCTGATCGGCGCTG 2361425 37 100.0 38 ..................................... CACTGCGGTGGCCCGCCAGTCGACGTCACCGCCGGAGG 2361350 37 100.0 38 ..................................... ACAGCAGCAGGTGTTCCCCCAACCCAAAGGAGCAGAGA 2361275 37 100.0 37 ..................................... CAGAAACAGCCGTCGGAGTGGTGGTCAGATTCATATT 2361201 37 100.0 37 ..................................... GTCATCGTTCCCCCGTGGTGCTGGTCAGGTGGTGGCG 2361127 37 100.0 38 ..................................... ACGATGTCGGCCGCCCGGCGCGCGGCGTCCGGCAGATT 2361052 37 100.0 39 ..................................... GCAGCCCTGCACCTGTCGCAGCGGCACCGGTAGTAGGTG 2360976 37 100.0 35 ..................................... CCGGGGCAGCACGGTGCTGCCCTACCGTCCACCGG 2360904 37 100.0 41 ..................................... GACGTCGGTGCCGCCGCCCGATGCCCGGGTGTACCACAGAT 2360826 37 100.0 37 ..................................... GAGCGCGGCGAAGGCACGCGCTTCCGCTCCGACGGTC 2360752 37 100.0 39 ..................................... GCGAGGTGCCCTATCTGATGTCGTGGGCACTCTGACGTG 2360676 37 100.0 38 ..................................... ATCTGGAACGCAAGCTGCTCGGTGGCCCGCTGGTACGC 2360601 37 100.0 37 ..................................... GTCGTCGGGGTCGGCGGCTTGCCGGTAGGCCTTGGTG 2360527 37 100.0 38 ..................................... GCTGAGGCGCGGCTGACGTGGCAGGCGATGCAGCGTGG 2360452 37 100.0 35 ..................................... TGGTGGCGCGGCTAGGGCTGCGGAGTCGGAGCCGC 2360380 37 100.0 34 ..................................... GAGCCCACGACAGCGCCCGGGTACGGGCTGACGG 2360309 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 82 37 100.0 37 GCTGCGCCGGACCTCCGGGTCCGGCGAGGATCGCAAC # Left flank : AATTCGAGCCTACGATCTGGTCTGGAGCGACCTCGAAAGCCGTGCCCTCGACGAAGCCTCGTCCAGGGAAATGATAGAGAATGCATTGGAGGCACTGACCAGTGGTCGACCTGACCAGCGCGACGTGGCGCAAGAGTAGCCGCAGCGGCAACGCCGGAGCCTGCGTTGAAGTGGCGACGAACCTGCCCGACGTCATCGCCGTACGGGACAGCAAGGACACGACCGGCCCGGTCCTGACCTTCGCGCCCGCCCAGTGGGCCACCTTCACCACCCACCTGCCCACGCCTGACGCCCGCTGAGACTGTTGGTGGCGGCTGGCCGTACCCGGCCAGCCGCCACCAATACGTACATTCCGCCGTATGAAGTTGATCTAGGAACCTCCGGTGACCACGCTCCAAGCGTGAGGTTCCGAACCGCCAAACCCCTACGATTGGGACATAAACTGCTCGTGAGCGACGTCAAGTCAATCGTGATTGATGAATACTTGCAGCTCGCGAGCC # Right flank : CAGACGGGTGTCCCTATGGGTTGTGTCAAGCGGCGAGGCGGGGTTCGTCCGCCGGTGTGGGCTGGTATGGCCGTTGGGTGCGGAGCATGGCGTGGAGGACGTCGACGCGGCGGCGGGCGAGGCAGATGAGGGCGGCGTTGTGCTTCTTGCCCTCAGCGCGTTTGCGGTCGTAGTAGGCGCGGCTGAGCGGGTCGGCGAGAGCGGCGAACGCGGACAGGAAGAACGCGCGTTTCAGCTGCTTGTTGCCGCCCTTGGGCGGGTGTTCACCACGGATGCTGGTGCCGGAGCGGCGGGTGACCGGAGCCAGGCCGGCGTAGGCGGCCAGGTGCCCGGGAGTGGGGAACGAGCTGCCGTCGCCGACTTCGAGCAGGATGCGGGCCGCGGTCCTGACGCCGATGCCGGGCATCGAGGTCAGGACCGGGGCGAGAGGGTGCGCATCAAGCATCCCCTCGACCTGTTCGGCGACCTGGTCGCGTTGTCGCAGCAGGTCACGCAGGCTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCGCCGGACCTCCGGGTCCGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-16.80,-19.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 6 3173669-3175603 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJJY01000001.1 Micromonospora sp. Llam0 Ga0236288_11, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 3173669 36 100.0 37 .................................... CGACAACAAGATCCGGCCGCCACCGCATCGGCGTGGA 3173742 36 100.0 37 .................................... CGTCGCCGTCAGACAACCTGGCCTACCTGACCCTCAC 3173815 36 100.0 38 .................................... CTGTCGAACAAGCTCTCGGCGCTGGCCAAGAAGGTCAA 3173889 36 100.0 40 .................................... TGGACGTCCGCCACACCAACTGGCTTGGCCGGCTCCTCAT 3173965 36 100.0 35 .................................... CTTGTCGTCCGGGGTCTCCGCCCGTTCCAGCACGG 3174036 36 100.0 35 .................................... CTTGTCGTCCGGGGTCTCCGCCCGTTCCAGCACGG 3174107 36 100.0 39 .................................... CATCGCCGCTGTTGCCCTGGTCGCATTCTTGGTCATCAA 3174182 36 100.0 37 .................................... CATCGGGATCCAGCGTCGGCACGTCGCCCGGGTCGAA 3174255 36 100.0 35 .................................... CCATCGGTGCCACCACCCACCGGCGGCTTGGTCCG 3174326 36 100.0 35 .................................... CAAGACGAAGGTGATGCCACGGCCGTTCGTGGCAG 3174397 36 100.0 36 .................................... CAGGTGCCGCCGAGCATGGCGTTGATCCAGGCGTGC 3174469 36 100.0 34 .................................... ACGTGGCGCGCGTGGCGAGGCTGACCGAACAACA 3174539 36 100.0 40 .................................... GGACTAGCGGCCCGCCTCGGCACATCGCGCGCCAGCCCGG 3174615 36 100.0 40 .................................... TCCGGCCCAACCAGTGAGGAATCAGATGAACCCCCGACAA 3174691 36 100.0 36 .................................... CAAGAGCCTGCAGGCGCCGCTGGTGACCGGGGACGA 3174763 36 100.0 38 .................................... CTCGAAGAGCGAATGCAGCGCCGCCACGACGTGGGCTA 3174837 36 100.0 36 .................................... CGTGACGAGCATGTCGATGTGCGTCTTGCTGACGAT 3174909 36 100.0 37 .................................... CGTACACCCCTAGTAGCGCCTCGTTGACCTGGCCCGT 3174982 36 100.0 33 .................................... CTCAGCCTCGTTCAGCCCGCCGGTGGTCACCTG 3175051 36 100.0 38 .................................... GTACGGGGTTCGTGACTCCCACCGCGCCAGGTGGGGCA 3175125 36 100.0 34 .................................... AAACCCGCCAAGCACTCGTCGCCGAGGTGCAGAC 3175195 36 100.0 41 .................................... TCGACGATCGACCGGGCGGTCGACGTTTTGCCGGTGCCGGC 3175272 36 100.0 36 .................................... GATCGGCGGCGACGGCAAGACGTACGGGCCGAAGCA 3175344 36 100.0 39 .................................... ATTGAGCGCTACGGCGAGCAGATTCAGGCCCGACTGGGT 3175419 36 100.0 40 .................................... TCCGGCCCGCCTGCCGGGTCGGCGACCGCCGACCTGATGC 3175495 36 100.0 37 .................................... TCTATACTCCGCCTACCGGAAATCGCAGAGAAAAGAA 3175568 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 27 36 100.0 37 GCCTCAATGAAGGGCAGCTCCCGAGGGAGCTGCGAC # Left flank : TGGTCGCCGGGACAGCAGCCCCGCGAGGACGACGCCAGCGCCTGACGAACTCTTGCGCGTCGGAGACAACCTCCGTCTCGGCAAAGCCGACTGGGTGTACGGCGACCGCGCCATACGGGTCCGCGTCTCCGACATCCGGTACGGCCACGACGACCCGAACTCCCCCGTCATCGGCATCCTGGCGACCGTCACCGGAGCCGGCCGCGACGGCCGGATGGTGTCGATCGCCGTCTACAAGAGCACGCTCACCCGACCAGGTGTCCGCGAACCCCACCGTCGGTCCGCCAACAGTGTCGATCCCGAAATTTGAGCCGCCCGGCACACGTAGGACCCGACCGCCCGGGGCGGGCTGGCCGTCGCAGGTCCCTGCGATGGCCAGCCCGCTCCGGTAGCGACCACCCTGCAAACCACCAGGCGGCTTCACCATCGACCCAGCCTCGGCAAAGAGCAGTTTCTCAAGCTGCGACCCGCATCTACGAGCCGCTGACGCACTCCCCGCT # Right flank : CAGGGTCAAAATTTTACCCCTCCTGACCTGCGCCGGAGCGACCGGTCCGCGAAGGGTCCGCCGGCAGAGGGTCTTGCGACGGCCCCACAGCCATCATCGTCCACTACGGAACAGGTGCTGAGCAGGGAAAACAGCTCCGCGAAGGGTCCGCGCTCACGGCCGTCATGACGGACCCTTCGCGGCGGGCGGCGATTGGGCTACCGGATTTGCCAGAGCACGGCTGGCGATCGAGCCACTACAGCCGATCACATCGAGAGACCGACTGGTGCCCTTCCGGTAGCGTACCGAGGTTGCCGGACAAGGATGATCCCTGCCGCCCGCTGTCGTCAGCCCCCGCCACTGCCGAGGTACGGCAGCCGTTGCTCGAGGTCGCGTACATGCGGCAACGCCCATCCCTCCACGACCGCCTTCTTCTCCAGCCGTTCGTTCGCGACGAACCACTCGTAGCTTTCGGCCTGCGGCCGGCGGGTCATCCGGGGGTAGTGCACCTGCTCGGTGAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGAAGGGCAGCTCCCGAGGGAGCTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.90,-11.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 7 3197287-3195500 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJJY01000001.1 Micromonospora sp. Llam0 Ga0236288_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 3197286 36 100.0 34 .................................... TGCCACAGTCGACGGCGCCGGAATGCTCAACCTA 3197216 36 100.0 35 .................................... CTGCTGCTGGCAACCCAGCCGAACATCTCGGCGTC 3197145 36 100.0 38 .................................... ACCGCCGGCAGCGGTGGGGTGTCGCTGTGGACCTACGG 3197071 36 100.0 38 .................................... TCAACGCGAGCTGGCCGAGCGTGCCGGCATGCGCCCTA 3196997 36 100.0 40 .................................... ATCGGCCGCTGGCGCACCCTCGCCGCCCGAGCCCGAGCCG 3196921 36 100.0 36 .................................... CTCGCGAAGTTTGTTTCCACCGCAGGTCACAGCGGG 3196849 36 100.0 39 .................................... GTGGTCGAGTCCGGCCGTGACGATGGCCGCGCCTACGGG 3196774 36 100.0 37 .................................... ATAGGCCCGAGCAAAGTGAAGGATGAAACTGGATTTG 3196701 36 100.0 37 .................................... TTCACTCTCCGGATTCTGTGCGCTTCGGCGCGTGGTA 3196628 36 100.0 39 .................................... GCCATGATGTCGATTGCGAGATTGCTCATTTGGCTCACA 3196553 36 100.0 33 .................................... CCGATGCAGATCACGATCCCGGATATCTTCTTC 3196484 36 100.0 38 .................................... TTCGGGGGTTCTCCCGGCCTGGTGCCCACATTCGACAC 3196410 36 100.0 35 .................................... GGTAAGGCCGGGAGGTCACCGGGACATGATGTCCA 3196339 36 100.0 38 .................................... TCGATACCGCGCCGGATGAACAGCTCTTGACCGTACGG 3196265 36 100.0 37 .................................... CACACATTCTGCGGCGGCGCAATCGGTCGGACAGCCG 3196192 36 100.0 37 .................................... GCACTGGCGCATCCGAGACCTGGTTGCCGGGCGGAAG 3196119 36 100.0 33 .................................... ATATGCCGCCGCGGTCCGCCGGTACCGGCAGGG 3196050 36 100.0 39 .................................... TCTCACCATCGGCGGTAGGCGCGAATGTGGCGACGCGAA 3195975 36 100.0 35 .................................... GCCGCCTCTCGGATTCTCCAGCCCTCCGGGAACGA 3195904 36 100.0 36 .................................... GGAAGGGGGCCGCCCGTGATGCCGACCGAGGACGAG 3195832 36 100.0 40 .................................... TTGCCGAACGCGTTGTGAACCTCTGTGACGTGGTGGGCGG 3195756 36 97.2 35 ..............................G..... TGGCCGCTGGAGGGCGGGGTGCTGGCGGATGCCGG 3195685 36 100.0 38 .................................... CACGGCGCCATCCGCTCCTGGTTCGTGTGGGCCACCCA 3195611 36 100.0 40 .................................... TTCACCAGAGCCGACTCGCCGGCCGGGTCATGGTGAAGGG 3195535 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 25 36 99.9 37 GTCGCAGCTCTCTCGGGAGCTGCCCTTCATTGAGGC # Left flank : ATGAGCCTGGACGACGTACGGCGTTATTTGATCGCCTACGACGTTTCCGACGACGTCCGCCGCACGCGGGTGGCCAAGAAGCTCGAATCGTACGGCGACCGCGTCCAGTACAGCGTGTTTGTCGTGGATGCCCGTCCGGCGAAGATCCTGCGGCTACGGGCCGAGCTGACCGACATGATCAACCAGGGTACGGATTCGATCCTGTTCTGCGACCTGGGTACGCTGCGAGAGCGCGCCAGCCGATCCCTCGACGTGATCGGCCAGGGTCGGCCGATCACCGGCCACGGCCCCGCGATTCTGTAGCCCCGCCCGTCACCCGCCGCGAAGGGTCCGTCGTGACGGCCGTGAGCGCGGACCCTTCGCGGAGCTGTTTTACCTGTTCAGATGCCATTCTATAGTGGATAAAAGCGGCTGTCGGGGCGTCGCGAGGCCCTCCGTCGACGGACCCTTCGCGGACCCCTCGCTCCACCGCAGGTCGGGAGGGGTAAGATTCGGACCCA # Right flank : CAGTCGGGATACCGCTCCAGGTCGGCAGGGCGGTGGGGGCTGCCTCGTGTACCGAGGCAGCCCCCACCGCCGTGGGTTGGGTTGTCAGTGGGGGAGGGCGCAGGTCTGCAGGGCGGTGGTGAAGGTGCCCCACTGGGCGGTGCTGAAGGTCAGGGTGGGGCCGGTGCGGTCCTTGCTGTCGCGTACCTCGGCTCGGCCGGCGTAACGGCGGGCCTCGACGCACGCTCCGCCGTTGCCGCCGCTGCGGCTGGAGGTGAACCAGGGGGTGTCGGGCTTCATCGCAGGTGCTCCTCGATCGGGATCGACTGCTCGCGGACCTCTCGGAAAATCCGACGGTACTCCGCTAACTCTTCGGGACGCTCCAGGTAACGAGCACCCACATGGGACTCGACGTAGGCGATGTCGGGGTCGTCCGGGTCGGCGAAGTCGAGCAGAATGAACGGGCTGACCATGGCGGCGTGGGCACCGGCGGACCAGGGGAGAACCCGGATCTCCACCCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGCTCTCTCGGGAGCTGCCCTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.70,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 8 5087913-5086609 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJJY01000001.1 Micromonospora sp. Llam0 Ga0236288_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 5087912 37 97.3 38 .............T....................... AGCAGCGTCGCCGCAGATACTGCGGGCTGCCGCTGCCG 5087837 37 97.3 36 .............T....................... GCCGCAGCCCAGTACGCCGTCACCTCGTGCGACGCC 5087764 37 97.3 38 .............T....................... ACCTCGCTGGGCCTGCTCGGCTACCTGCTGAGCTACCC 5087689 37 97.3 37 .............T....................... ACCGCCAGCGGCTCCAACGCCTGCGACAGCTCTCGGT 5087615 37 97.3 39 .............T....................... CGACTGGATCGACCCGCGCGACGGTTCCGGGTTGACCGT 5087539 37 97.3 37 .............T....................... TAGCCGGCGCGGTTTCCAGCAGATTGTCACGCACCGA 5087465 37 100.0 38 ..................................... AAGGATGAAATCCATGAACCGGCTGCTGTCCGCGTGCA 5087390 37 100.0 38 ..................................... GACGAGGTGATCTTGTGCGCCAGTCGCCAGTCGGCGAC 5087315 37 100.0 37 ..................................... GCGCTGGTCAGAACGGCAATCCGTCGTCCTGTCCGTC 5087241 37 97.3 38 .............G....................... ACGGGTCACTCCGACCCTGCCGCCGACGGTGCGGCCAC 5087166 37 100.0 37 ..................................... GTGATGCTGCCGGCTCACGCCCCGGGCGGCACCGGCA 5087092 37 100.0 38 ..................................... ACCACCCTCAGCGTTGCCTCGGTGTGATGGAAGCCGGC 5087017 37 100.0 38 ..................................... CATCTCGGCAACTCGTCGGGCACCGCTGACTGCATCCG 5086942 37 100.0 37 ..................................... ACCGAGGGCGAGCCCGGCGACGTCACCTACGCGGTCG 5086868 37 100.0 38 ..................................... GCGATCGACCTGGGCAACACGTTCCTGCCTGCGCTCGG 5086793 37 97.3 38 ...............C..................... GTCGGGGGGCAGGTCGGCCGGGTATCCGGCGTGCGCGA 5086718 37 97.3 36 ..................................A.. GCCTCCGAGCGGATCTCCCAGACGACGATGCCGAGC 5086645 37 94.6 0 ...............CG.................... | ========== ====== ====== ====== ===================================== ======================================= ================== 18 37 98.3 38 CCGTCACCGGCCCACGCGGGCCGGTCTCCATTGCGAC # Left flank : ACTGTGGCGGCAACCCTTGGAACGGCACGCCGTGACCGCTCTGCTGGAGCACCGCGAGCTGCGGCCGGGCGAGGGCGTCACCATCAACTCGGCCAGGTGGGCGCCGCTCGGCGTCTTCACCGTGGCCGCCGCCGCCCGCCAACCCGTCGAAGGCCGCAAATCAGCCGGCGTGCTCGCCCCGACCCCGGTCACCATCAACGGCCCGACACCCACAAAACCGTGACAACCGGCGTCCGGGTCACCAGCCACCACAGCGACGCCAGCGATTGCGTCGGTGCCGCCGAGTACGCTGCCCCCACTTCCGCCGCGCCGACGGTCACGGAGTCGTTTGATTGATAAATGAACAGATGCGCCCGATACGTCCACCGACCTCGGAACCCCCGGCGGACACGTCTCACGCGGGAGGTTCCGAACCCGGATATGCAGCCAAACCGGACCAACCCGACCGGCAACTCGATTGAACTCCATCGCGAACTGCCTATATGGCCAGTTCGCGAGCC # Right flank : CGCCAGCATGATGTGGAGCTCTCCGTCTACGACCTGGCCCTTCACCGACTCGAGAAGTCGGTCTTCATTGGGGTGCAGGGCGGCTGCTGTTGGTGCCGGACGACGCGCACCCATGGACAGCGGAATTCGGTTCCTGGGCCAATCAAGTCAGAAGGGCTCAAGCCGCGAGCGCCGGTCGCCTCGCGGGCGGGTGGCGAGGCGACCGGCTGCGGGCGTAGCGGCAGGGCCGGTCAGCGGGCGGGGGTGTGGGTGAGGAAGGTGGTCCAGGCGGTGGGGGAGAAGGCGAGGGTGCCGCCGTCCCGGTCCTTCGAGTCGCGGACCAGGACCCGGCCAGGCAGGTTGCCTGCCACCTCGACGCAGTCGCCCCCTGTGTCACCGGAGCGGCTGGACTTGCGCCACGCGGCGGCGACCTCGACACAGTCGCCGCCGGTATCGGTCGACCGGCTGGACTTGCGCCACTGCAGACCATCGGTAGTCGTCATGGGGTTAGCCTATATTTC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTCACCGGCCCACGCGGGCCGGTCTCCATTGCGAC # Alternate repeat : CCGTCACCGGCCCTCGCGGGCCGGTCTCCATTGCGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-17.30,-17.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 9 6080734-6080335 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJJY01000001.1 Micromonospora sp. Llam0 Ga0236288_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 6080733 36 100.0 36 .................................... ACGGTGGTGCCGGCGGGGATGGTGATGGCGACGGCC 6080661 36 100.0 37 .................................... GTCGCCGCCGGCTGGATCGGCTGGCTCGTCGTGCACC 6080588 36 100.0 40 .................................... AGCAGATCCCGGCACGCTCGGGACGGATAGGTCCGCGCGG 6080512 36 100.0 38 .................................... TGAAGGTCGATCATGTCATCGAAGTCGAGCGCCGCGAG 6080438 36 100.0 34 .................................... CTTTCGGGCTAGAGTTTCAATTTGAAATCGCGGT 6080368 34 83.3 0 .........-...T...-............AAG... | ========== ====== ====== ====== ==================================== ======================================== ================== 6 36 97.2 37 GTCGCAGCTCTCTCGGGAGCTGCCCTTCATTGAGGC # Left flank : TGGCGACATTTCAGCGGCTCGTTGGTTCAAGTCGAGCCGTAGCAACGGACAGAACAACTGCGTCGAGGTTGCCGACAACCTTCCGGGCGGCGTTTTGGTCCGGGACACCAAGGACCGCGACGGCGGTATCCTGGCCTTCGGCCCGTCCGCGTGGCGTTCGTTCGTCGAGCTGGCCAAGCAGCACCACTGACGGCTATCTCGGCGAGACAGTCGGAGAGCGCCGACCCTGCCTCGGTAGGGTCGGCGCTCTGTATCGTTTGCCGGACGCAGCGAGTCGGGGTCGCGTGTTCGCCGGCCGGCTCGGTCGGTTCGCTCTCCGCCGCGAAGGCTCCGTCGTGACGTCCGTGAGCGCGGACCCCTCGCGGAGCTGTTTGCGCTGTTCAACTGCTATTCGAGAGTGGACGTTGGTGGCGCTTGGGCTGTTGTCGTGCTCTCTCCGGGCGGACCCTTCGCGGACCGCCCGCTCCACCGCAGTTCAGGAGGGGTAGAATCTGTACCCT # Right flank : TTGGTCTGGCAGTTGGTTGGGAACATCCTGCGGCGCTGGCTCGGTGGGCGGGACTGCCGGCTGCCGGGCTGACAGCGGTTGAACGGTTCGTACTCGCTGGCCAGCGCCGCCAGGTCCGGGCCAAGGTAGTGGATCCACCAGATAACATGCCGGTGTGGGGTCTGCGCGGGGACTGCCCACGAGTTACCAAGATTGGCCGGCGCTCGCCGCTGGTGTCAGTCCAGCTGGGTCACGACGTTGCCGTCGGCGTCGTGGCCGACGACGGCGGTGATGTCGGAGAGGTTCATCCCGTCGCGCTGACCCCCGTCGCGAGGAAGCCAGACCGCGTACGCGCCGATCTGGCGACCGCCGGTGGCGGGGAGTTGCTGTACGGCGGCCGTGGCGGTCTGGCCGAACATGGTCACGGACACGCTGGTCACCGCACCGCGTACGGACCCGACCAGGATGATCTCCCGCTGCTGCGGGTCAAGCGGGGCGACGTACGGCATCGGCTTGGTGGG # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGCTCTCTCGGGAGCTGCCCTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.70,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //