Array 1 1347431-1346863 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009290.1 Pseudomonas chlororaphis subsp. aurantiaca strain JD37 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1347430 28 100.0 32 ............................ AGAACGCGAGACGCGAAGTCGAAGCGGTGGTC 1347370 28 100.0 32 ............................ CAAACACGCAGAACCCGTAGCGGGGGTCACGC 1347310 28 100.0 32 ............................ AACTTGATCCATGACGGCAGCCCTGAGGTGCT 1347250 28 100.0 32 ............................ GGACGCTGGTTGTGTGTATGGACCCAAAAGAA 1347190 28 100.0 32 ............................ TCAGCGACAAAGGGAACGCCTTCGGATGCTTT 1347130 28 100.0 32 ............................ GCCATCGCCGCGTCTGCTTACACCGCCGATGG 1347070 28 100.0 32 ............................ ATGACAGGACAAGGCAGACGGTTCTCTTCGCT 1347010 28 100.0 32 ............................ AAATGACTCGATGGTAGGATCAAGGAACGAAA 1346950 28 100.0 32 ............................ CTTCGGGCGCTAAGCCCCGGATAAATCGCCCC 1346890 28 96.4 0 ............A............... | ========== ====== ====== ====== ============================ ================================ ================== 10 28 99.6 32 CTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : AGCACTGGCAAGCCTGTTGGCGCTGAACTGGCTGACGGGCATGCGCGATCACGTACAACCGAGCGAACTCCGCGCAGTACCAAGCCCAGTGCAATACCGGCATGTCAGCCGCGTGCAGACAGACAGCAACCCCGAACGCGCTCGCCGACGCCTGATCAAGCGTCACGGGATTACCGAAGAAGAAGCCCGCCAACGGATTCCCGACCACGCCGCAAAACGCTGCGACCTGCCCTTCGCCAACCTGCGCAGCCACAGCAACGGCCAGACCTTCCGCCTGTTCGTCCGTCATGGTCCATTGCTCGACACACCACAGCCAGGCAGTTTTGGCAGTTATGGTTTGAGCACGACGGCAACCATCCCCTGGTTCTGACCCTCTTTTTTCCGCCTGACAAAGCCCCTTGTAAAATCAATGAGTTACAGGGGGCCACGGAAAAAGCCTATAAACCCGGTTTTGAAGGGTTTTCTCTTTAAGAACGTGGGGTTATGGAGGGAGGGGTCTA # Right flank : TGTCCGCAGCCTTCCAATTCGATAATTCATTTTTTCACTGCCGCGTAGGCAACCCGTTCCCTTCTCTACGGCTCAAAAACGCACCCTCAACACACTCCCCAACCACCTCCCCCCGACATCCAGAATTTTCATACTGACCCCCGCACTTTATTTCGTTTGCGACGCGGCCTCGCTCTTGGCTTAGATAGCCGCCATGTTCCAGGTAGTCAGAGCCCTTAGCCCATGAGCAGCGAAAGCATCAGCCAGTCGATTTCCATCGTTCACCCCATCCGCCTGAGCCACGGCAAGAATGCCGAGGTGTGGGACGAGAACGGCAAGCGCTACATCGATTTCGTCGGCGGGATCGGCGTGCTCAACCTGGGGCATTGTCATCCGCGGGTGGTGGCGGCGATTCAGCAGCAGGCCACCCGGCTGACCCACTACGCGTTCAATGCGGCGCCCCACGGGCCCTATGTCAAGTTCATGGAGCGGCTGGCGCGTTTCATGCCCTTGAGTTACCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 5676246-5675798 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009290.1 Pseudomonas chlororaphis subsp. aurantiaca strain JD37 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5676245 28 96.4 32 ...........G................ GGAACGTTTTGTGAGTATGTCGCGACCGGAAT 5676185 28 96.4 32 ...........G................ AGTGACGCGGCGATTCTCGACACCACTGGCAA 5676125 28 96.4 32 ...........G................ AGGCTGTAGACCTCGACGAGTCATGCTGTGGG 5676065 28 100.0 32 ............................ AATGGTGGCACCCGGATTTCGGGATGCAGTAC 5676005 28 100.0 32 ............................ ATACTGGGCCGCCTGCAGGGCCAGCTGCGTGG 5675945 28 100.0 32 ............................ ATCTGCGCTTCGCGGCCAGCGTTGTAGGACTG 5675885 28 96.4 32 ......................C..... AGCCGGGCTTTTTGGTTTCTGCAATTTGGCTA 5675825 28 67.9 0 .C.........C.C.......CC.AGCG | ========== ====== ====== ====== ============================ ================================ ================== 8 28 94.2 32 GTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : AAGGCTCGTTGCTCGCTGCCTTGAAACCCACCGCCGCAGGTCCTGCGGGTAACGATTCGCTCTTCACCGTCCGCCCCGGCATCAGCGCCGAAGAAGCGTTGCTTCACGTTTCCATGCTGCTCAAGTCCGCCGAGGAGGTCTCCGACGAAATCACCGAACACGCCAGCGGTATCGAGCGTGGCCTGATCTGGTCGCTGGTGCATTCCGTGGAGATGGCGCGCGGTGTGGTGGATGCCTTGCTCGACGGTAATCGTCTCTGATCGACAACGGCCCGCTGGCCGCGATCCTCCTTGAGATTCGCGGCTGGGCGGGCCAGCCAAAACGGATTCATGGCGCTAGTCTGAGCGCTGGTGTTCTGTCCCTGACGCTGACCCTTTTTTCCGAACGGATTCCGGCCCTATGTAAATCAAACACTTACAAAGGTCTCTAGAAAGAGGAGTAAATATGGTGTCCAGCATGATTTCTCTTTGAAATCATGGCGCTATTGGGATATCTGTCTA # Right flank : TTAATCCATAGCATCAGTCCGCGTTGGGAGATAACACCGCGACCCAGTTCCCAATCTCACTCCACAACCATGCCACCTACCAATCCCACCCCTTGTCATATCCCCTTCATCGCCGCCTACTAAGGTTTGCTTTTGACATTAAGTCAGGGAGCAACCATGAGCGATTTCACTCTCGGTCGGCGGCGTTTGATTCAGGTGGCGGGGGTAGGGTTGTTGCTGCCGGGGTTGGCGCCGGCGGTGATTGCCTCGGGCAAGGACCGGCCGAAGATGGTCGATGGCGTGCAGTCCGGGGATCTGCTGGGCGACCGGGCGATGGTCTGGAGCCGCACCGACCGGCCGGCGCGGATGGTGGTGGAGTGGGATACCCGCAGCCTGTTCAGCAATCCGCGCAAGTTTGTCTCACCCCTGGCCGATGCCCGCACCGACTTCACCGCGCGGGTCGAGTTGGGCGGGTTGCCCACCGACCAGGCGATTTTTTATCGGGTGTATTTCGAGGACGC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGGATAGGCAGCTTAGAAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //