Array 1 938256-938491 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRTN01000001.1 Paenibacillus peoriae strain FSL J3-0120 NODE_1_length_938544_cov_1.6031_ID_7477, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 938256 32 100.0 37 ................................ TCCGATCGGTTCCGATAATTTCGCATACACTTCGAAC 938325 32 100.0 36 ................................ TTGTTTGATTCAAGGAAACGGACGTTATCTGCCACA 938393 32 100.0 35 ................................ TTGTCCAGAAAGGAGGACAGAGAGGATGCTAGAAA 938460 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 4 32 100.0 36 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : AGTTTCGTATTCGTGTGAATGTCATCTATCCGGGTGCCATTTCGACGAATATTGATGAAACCACGGAGAAATCGGAAGGGTTAAAGCAAATTGCCATCCCCGTCAAGTTTCCCGAAGGAGGACAACCATTGGCAGATGGACCGGGTCAACCCGAGCAGGTAGCTGATTTGGTGACATTTTTGGCCTCAGATCATTCGCGTCACATTACTGGCGCACAAATTGTCATTGATGGAGCAGAGTCGTTATTGTTTTAGAAAATAGAGCATTCTCTGGGATAGAGAAATGTTTTGTGATATCCTGAATGTATTGTCTTGGTTACGGTGCGAATGTGAAGCTCACATAAAAACCCCGGATCCTTCGCACCTCGAAATTTGTCGAAATGGATTCGGATTAGCTTTCTTCGTTAGAAGTCAATAGTCGATTCAAGCTTTTTTAGCATCGTTTTTTTCGAAAATGTATGGAATTGATATTATTAGGGTATTAATTCCTTCATTTTCGCA # Right flank : TGTTTAAGCGTCAATGCCACAACAGTTCAGCTCCGTCGCACTCTATATGAGTG # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 186679-186442 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRTN01000012.1 Paenibacillus peoriae strain FSL J3-0120 NODE_12_length_208322_cov_1.22909_ID_7501, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 186678 32 100.0 35 ................................ TTTCTACTGGAACCCGCCTTGGACTTGGCCGTTTT 186611 32 100.0 36 ................................ TCCACATCTACGCTGTCTATGCCTTGTTTGGGATCA 186543 32 100.0 37 ................................ CTCCTGCTCTTTTACGTACTCAATAATATCGTTTGGC 186474 32 96.9 0 ..........G..................... | G [186459] ========== ====== ====== ====== ================================ ===================================== ================== 4 32 99.2 36 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : ATTCGCTGCTCATATGCAGCCTCGCTCGTCGATTTGGAGAAGTCGCTGGAACGGATGGGAAGGTTTATGCAGGTAATGCAGCCGGTATGATGAACAGGGTTAATAACTCAACTTTTGCCGAACGTCTTCATAAAATATTTTACAATACCTTTATGATTTTCGAAGACATAAAGGTATTTTTCTGATCAATGTAGTGGATATTTCCGGATGTATTTACCCAAAGCCAGAACGTTCAGCTTTGGAGTTAACTGGCAGAACTGGCAGAGGTGAAATAAGTTCAGGCAGGTATTTGTTGCTAAGCCAAAAAGCGAGTCTGTCCAGGTGCGAATGTGAAGCTCACATGAATTCTCCGAGAGATTCGCACCTCAGATTTTGTCGAATTATATCGAATGTGAACAAATTTTAAACGATCGCAAGAGGATGAGGTAATATTAGATGCGTTTTTGCCAAAATAACGTTAGAATGTTACTTAAATAGGGGGCATTTGACCCATTTTCGCT # Right flank : TAAAGCGCTATGCAGTGATTTTGTTGGGCTACGCAATAGGTATAGGGTTATTTTACGCTTTGGGATATAAGATGAGCGCAATGGGAATCTATGCAATTTTGACAGGAATTGTGACTGGAGAAATAATCAACTTCGTAATATCAAAGCGAGAGAAATGAACCTAGGTATCCCCTGATTGCATCAACATCAGGGGATTTTTCATGTAATTAAAAGGTCCAACAGAGTTTCTGCATGGGACCTCTATATCATTACTGGTGAGAATCCACATGGGGAAATGAATTAGTCATGTCAACTCTGTGAAACCTTTTACTTGGATCAACCCAATCATTTCAGGATGCCACTCGTCCAACATGTCCCAATATGTGTAAGTTATGCTGAATTTTCGCTATAAACATTAGTTGCATAATATATTGACAGATGGTTAATTATGGAGAAGAATAGAGGGTGATTTTTAAAATAATGGAATTTTTATGTGAAGGGTGGTTATGACTTGAAGCATA # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 192268-191162 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRTN01000012.1 Paenibacillus peoriae strain FSL J3-0120 NODE_12_length_208322_cov_1.22909_ID_7501, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 192267 32 100.0 36 ................................ TGGAACTTGCATCTTGGCGTACATACTCCATATCAC 192199 32 100.0 37 ................................ TGGAAGGGAGGTGAAAACACATGATGAAAACATTCGG 192130 32 100.0 36 ................................ ATATTGAAGGGTGACGATCCCACAGTATTAGCCAAC 192062 32 100.0 34 ................................ GACCATAACATAGACAAACCATCCAAACGAAGCA 191996 32 100.0 34 ................................ TGGACTGGCTCCTGGGCTAGACGGTGAGATTCCC 191930 32 100.0 34 ................................ ACTACAGCAGCGTAAAGGGAGGGCTGAACCTTGA 191864 32 100.0 33 ................................ TCCGTTTCGACCGTGTAAAACGTCTTAGCTGTC 191799 32 100.0 33 ................................ TGCGTGGGAAGCGTACCAAGCATCCATTTATGA 191734 32 100.0 36 ................................ AGTTTCCGGTTCATTCATACCATACGGATCTTGCCC 191666 32 100.0 37 ................................ TTTGAACTCCTCCTTGGTGATCCGTCCCAGCCCCATC 191597 32 100.0 36 ................................ GGTACACGTGTTGATATCGAAGGCGTCGGAGTTCGA 191529 32 100.0 35 ................................ TGATCACGATCCCAACCCTCTATGATTACGATATG 191462 32 100.0 33 ................................ ACATCAGTCCTGGACCAAAGCCAGTACACTTTA 191397 32 100.0 35 ................................ TTTGAGATTGTTTAGTTCACTCAACTGTATCCCTC 191330 32 100.0 36 ................................ TAATTCCTTTTGCAAAGCGGCTATACCATTGCTTTG 191262 32 100.0 37 ................................ GACAAATGATTAACGGTAGCTGCACCGATTTTATTGG 191193 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 17 32 100.0 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : GTCCTGATTTTGATTAACAAGAAAATGATTAGATAAAGGATTTTACAAAAAAAGAAAATGGGATGTCATGATGAAACGATGATATAAGGAAAATCGTAATGAAGGCATGGTACAATGAAACAGGATAGGATTATGTATCTCTATTTGAATGTATTTTGGATTTGACCCAATTTAGACGTTTAAAGTATGAACTAGAAGAATTAATAGACGAAAGAGAACTTAGCCTGCATTTCTACAATTTGGGTGATAGCTATAAAAAGAAGAAGAGCATATAGGGGCTAAGGAAGCTTCCAATGTGGAAAGCTCACTGATTTTATAAGGTGCGAATGTGAAGCTCACATGAAAACCCCGGGTCCTTCGCACCTCGGAATTTGTCGAAAAGTATAGAAAATGCTATCAGTGAGAAAAAGTCAATGGTTAATTTAAGCCTTTTAGACATTGCTTTTTTCGAAAATGCATGGAAATGATATCATTAGATAATCAATTACTGCATTTTCGCT # Right flank : ATGATGAATGGAGGACGTCCTCAAGAAAGAAATAGGCGCACTCCATGTGACAATTGACGATGCGGCAGGATTCACGGTCAGTCGTTACGGCATATGGTTTTGTTTGACTGGTATGCTTTGCATAGTTCTCAGGGCTTCAGCTGCAGAAGGAAGAAAATAAAATCGAAGTGAAACGATCTTTGTGATATGTACAATGCTGGCGATGGGCGCGATGAGAGGCAATGATGCGGGGGAATGAGGCAAGAATATGAGGGCGTACAGGGGATAAAATGCGGAAGAACCACCGAAGGATGAAAAATCCAGTGCGGTGGTTCTTTTTTTTCACTCGTCTTGTATGCCATCATTATAGGGGGAGGGGATGAAGGATGTTCCAGGATTTCAAGCTCGTCAGTGACCGCCCGTTCTCGATACAAGTAAAAGAATACGTCAATCGTTTAATTATAAAAGGGGCGCTTCAGGCGGATCAGAAGCTGCCTTCCACACGAGAAATGAGCGTTCTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 198855-196971 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRTN01000012.1 Paenibacillus peoriae strain FSL J3-0120 NODE_12_length_208322_cov_1.22909_ID_7501, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================= ================== 198854 33 100.0 35 ................................. TACGATCGTCGGCGGCGATGCTCGCTTAGGTATAT 198786 33 100.0 35 ................................. ATAGATGTTGCCGATGACCTCAACATTATTTTCAT 198718 33 100.0 35 ................................. TTGACCTTGGAGAAGCTCATTACGCATTCGCCCAG 198650 33 100.0 35 ................................. GTTTGTCTGTCTCTTTATGGCCTACAATATACCAC 198582 33 100.0 34 ................................. TTACAGGAGGTTGAGCGCCTTACTGGAGTACGTC 198515 33 100.0 34 ................................. TATAATATATGGAATACTTAACCATCATACCACA 198448 33 100.0 36 ................................. AATTGATACTGGACCAACTTCTCAGCTACTTCCGGC 198379 33 100.0 39 ................................. GTTAAGCATTCGCATCGCATCTAGCGAGTCCCATACGCA 198307 33 100.0 36 ................................. AGCCTTCGTTAAATCATCATTCCAGCCCATTGCAGC 198238 33 100.0 35 ................................. CATACGCGTATAAGTACTTGTATGGACGTCTAATT 198170 33 100.0 36 ................................. AGCCAATATTGGAGCAGACATCTCCCTCGGGAGACA 198101 33 100.0 33 ................................. AAACCGCGCTTTGATCTTTCTGCGTGGGAAGCG 198035 33 100.0 35 ................................. ACCTTAATCGTGTTCAACCCGGCTATAACAATGGC 197967 33 100.0 36 ................................. AGGCCCACTTTCTGCTTGTACTCTGCAATTCTCGTA 197898 33 100.0 34 ................................. GAGCGTTCAAGCGCTCCAGTCGTTCCCGAATGTG 197831 33 100.0 38 ................................. TGGCAATAGGCAAGGTATGAAGCTTCACTGTTTTTACC 197760 33 100.0 35 ................................. GAATCAATCATGACACGTTTCAAGGCCAAGAAATC 197692 33 100.0 36 ................................. TTGTGTCGTAGAGGAGTTTTGCGATACGTAGTGATC 197623 33 100.0 37 ................................. TTACCCAACTTGACGGAGGTGGTTACTGACGAACACA 197553 33 100.0 34 ................................. AGTCATTAGCGCACATCCTTCACAATTTTATAAG 197486 33 100.0 33 ................................. CTAGGCACCCATATATAGCCCACGGCAATATTG 197420 33 100.0 37 ................................. AATCCAAACAAATGAAAATTTGCCCCATGAACTGCCC 197350 33 93.9 37 ..................A......G....... ATGTTTATTGGCATCAATGGTCCTGATGAACCGGCAC 197280 33 100.0 37 ................................. CTCTATCCCCTCTCCTTGGGTAGCTATTAGAGCTGCT 197210 33 97.0 37 .....................A........... GTAAAGAAAATGCTTCGTGCAGAAAATACACGCTATG 197140 32 87.9 37 .........CA.G..-................. AGGTAACAGAGATGAACCAGTATAGTGTACCGAAGGA 197071 33 93.9 36 ............G.........C.......... TTGCTAGGACTTGAAGAATTAACAGTAGAAGCTAAA 197002 32 90.9 0 ......T...A.....-................ | ========== ====== ====== ====== ================================= ======================================= ================== 28 33 98.7 36 GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Left flank : TCCATTTTTGTGGAAGTAGGTGTGAACACTTGCTCATTTTGATCACGTATGATGTAAGCACAGTAGACAGAGAAGGTAGAAAAAGACTGGCAAAGGTTGCGAAAAAGTGCGTAGATCACGGACAAAGGGTGCAAAATTCTGTGTTTGAATGTATTTTGGACTCGACCCAGTTTCGCAGCTTAAAGTATGAACTCGAAGAATTAATAGACCCAAAAGAAGACAGCTTGCGCTTCTACAACTTAGGAGATAACTACAAGAAGAAAGTAGATCATATAGGGGCAAAGGAAGCTTACGATATGGAAAGCCCACTAATTTTATAAGGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGAAATTTGTCGAAAAGCATTAGAATGCTGTCTATGAGAAAAAGTCAATAGTTGATACAAGCCTTTTTGACATCAGTTTTTGCGATAATGTGTGGAATTGATATCATTAGGGTATGAATTCCTGCATTTTCGCT # Right flank : TTGAAGATACTGGTGAAAAGGGACAGCCTCGTACGTCGCACTCCATGTGAGTGCGTATTGGAGAGGTAGCATATTTCATAAGGAGGTTTTGTATTGGCTCCGGCGCATTATCGCTACTTTTTGGAGTAAGGAAGAAGACAATGACGCTTTTGAGGCAGGTGTTCAATCTCTTCTAATGAAAATCTCAGAACAATACAAACTAACGTATGGCGAAAAAACACAGCTGCTTGCTTCAATGATACTAGAGTATTCGAAATACGTAATAAGATGGGAACGTCACAGTACAATGGATGAAGAAGGAATGTGGGAGTAATTGAGACAAATGCGGCACTGGAGTTGAACGAACTGGACTTGATAGAGGAGAGATTGAAATCTTCTGTATGGCTACATAATTATACTCAATTCACAGCCCTAGGACCTATTAGCACATTTGTCTGAAAAGGCACATATAAGTTATTACCTGCCAGTCATTATTTATATTTTTCTAATACACTTTTCTT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 4 208278-207974 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRTN01000012.1 Paenibacillus peoriae strain FSL J3-0120 NODE_12_length_208322_cov_1.22909_ID_7501, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 208277 32 100.0 36 ................................ ATCCGCGTTGTCGTCACGTCATGATGCCCGTACGAA 208209 32 100.0 37 ................................ ATGTTGTAATTATGTTCCAGTTCCGCTCGGTTATGAT 208140 32 100.0 35 ................................ CGGTCTATCGCAGAAAACGCGCCGAAGGATTTTAC 208073 32 100.0 36 ................................ GACTACTCAGGCAAAGCTGTCGGAAAATTCGACTAC 208005 32 87.5 0 .............C....AT..........G. | ========== ====== ====== ====== ================================ ===================================== ================== 5 32 97.5 36 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : GTGGATTGAAATTACGTTAACGGCGAACTTAAGCGATTTATTAA # Right flank : ATCTATAGTGTTCGCAACCTTGCATAACAACTCTCAGCAGAATTTACATGATTGGAGCCAATATATAATTTGTTTTATGAACTTTAAGATTATTAGTTTGGTTCTCTCTAAAAATACTATTTCCACATGACTATAAATAATATTTGTTTACATAACGAGAATAGATCTAATATGATTAGTAAGTAGAAGAGAATCTAGTATTTTAAGCGGAATACAAGTCTCTTCACAATAACCACCTAAAAGTCATAAAATGAATATAGAGCTATGGGTGTGAAACCGAAATCCTTGAATTAAGTAGATAAGAGAGGAAAGGAAGAGAAATTACAACGCGAGGACAATTATATTAGCATTATCTATGAATTCACTTAACAACGGGAAATATCCAAGTGGGGATTGTAGATGCTGTCGCTATTTACCTTAAGGCACGATTATACAGATTAAGTATTTGCTTAAAGGAGGAAAATAGATGAATTTATTATTCATTCCTGGTCTATATTTTT # Questionable array : NO Score: 8.94 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //