Array 1 2369247-2372456 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016870.1 Legionella pneumophila subsp. pneumophila strain FFI103 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2369247 28 100.0 32 ............................ TTTTAAAAAACTTTAAGTTCTTTTCTGAAACA 2369307 28 100.0 32 ............................ CGATGAATCAACTATCAATAGATGGCGTTTAC 2369367 28 100.0 32 ............................ AATAAACAAAATTTGGAGTTAAATGTGAATGA 2369427 28 100.0 32 ............................ TTCAGCACATCATATGCGCAGTTAATCAACTT 2369487 28 100.0 32 ............................ ATACCGACACATTTTAATGGGATGGGGTGTCT 2369547 28 100.0 32 ............................ ACTTAATATTACCGAGCTAACATCAGCTAAAA 2369607 28 100.0 32 ............................ TATCGCAAGGCGTGTTCTTTGTATCATCCAGA 2369667 28 100.0 32 ............................ TGAAAAAACATTACACAATGATTCTACTATAC 2369727 28 100.0 32 ............................ ATTACACATATGACACTTAATCATTATCAATC 2369787 28 100.0 32 ............................ ATCCTAAGCACAAGCTCGCGCACTGTAGCCGT 2369847 28 100.0 32 ............................ TGTATCCACTGGAGACTCTCTTCTAATTCTTA 2369907 28 100.0 32 ............................ TGCTGAATCAAATTGACGCCTATAAGTTAAAT 2369967 28 100.0 32 ............................ TCTTTAACTTCTCTAATTATAGTACTGTTATC 2370027 28 100.0 32 ............................ AGCAAAAAAACGAATCGTCGTCAAGCGCAAGT 2370087 28 100.0 32 ............................ ATCTGCTTCATAAATTAAAAATGGAGAACTAG 2370147 28 100.0 33 ............................ CACCATTAACAGTTCCTGCGAGTACCGGCACCA 2370208 28 100.0 32 ............................ ATAACAGCGCAAGAGATTAAGGGATAGATAAA 2370268 28 100.0 32 ............................ TTCTCAACACAGTCTTTTTTGCCATCTCTTCA 2370328 28 100.0 32 ............................ TATACCGACTGCGCTTCCGGTGGTTCTTTGTG 2370388 28 100.0 32 ............................ AAAAGCCAACCGAGACAGCCAAAAAGAGCTTA 2370448 28 100.0 32 ............................ ATTGTGCCCAAGCCAAGGTTGGTTCTTGCGTC 2370508 28 100.0 32 ............................ ATAGTGAAAGTAACATAACCACGAGCAAAAAG 2370568 28 100.0 32 ............................ TGATTGGTTTCTTTTTCTTGACTGTTCTTTGA 2370628 28 100.0 32 ............................ TCTGATAGCGCAACGGCACTGGCCACCCAGCA 2370688 28 100.0 32 ............................ AGACAAGACTGGAACAATATCTCCAGCCTGTA 2370748 28 100.0 32 ............................ ATGAGCCAGTCGTATTTCATCTTGTTTTAGTA 2370808 28 100.0 32 ............................ AGGCAGTCGGAGAGCAGGAAAACACGGAAATC 2370868 28 100.0 32 ............................ GCTTGCTGTTGCTTTGCTTGTGCGTATTGCAC 2370928 28 100.0 32 ............................ ATTTGAAAAATCTATCCCTAAATCTTATGTAC 2370988 28 100.0 32 ............................ TCTTTGAAATGACAAAAAGGTATTATGAGTAC 2371048 28 100.0 32 ............................ ACAAGAAAGCGTGGACTTAATAGAGTTACTAG 2371108 28 100.0 32 ............................ TTCCCACGATGCCAGCGAGCAAGAAACAGAGG 2371168 28 100.0 32 ............................ GTCCATCCTTGCGTTTCCTTCCTTGTCGTATG 2371228 28 100.0 32 ............................ ATTTCGCCTTCAACGTCATGCGATAAATTTTT 2371288 28 100.0 32 ............................ GCTTGAACTTCTGCGACTGCTCTATCGGATTG 2371348 28 100.0 32 ............................ TTTGGCTTCCAATGGCGTTGTATTAACAAAAA 2371408 28 100.0 32 ............................ AGTCGCAACATTCCCGATTGACAAGTAAAGAC 2371468 28 100.0 32 ............................ ATATTCTGTTTGACCAAAGCAATCATTTGAAT 2371528 28 100.0 32 ............................ TACAAGTCAAAATTTTCTATTTCTTTGACAGC 2371588 28 100.0 32 ............................ ATAGATGTTACGTTAGACCAAAGTCATTTGGG 2371648 28 100.0 32 ............................ TTGCAGCGAAGGAGAAGTGCCATAATGTACAA 2371708 28 100.0 32 ............................ TTCACAACGCCTGGGTTAGTGCTAGGAGCAGA 2371768 28 100.0 32 ............................ TTCGCGTCTTTAATCTGTATATTCGGGTGTTA 2371828 28 100.0 33 ............................ AATAAGGTCGAACTGCTACACTAAGTTTACACC 2371889 28 100.0 32 ............................ ACTACATTCTTTAATACTTGTGCCATTTCTTA 2371949 28 100.0 32 ............................ AAATAACCGGATTGAACCTTCCCGAATAACAC 2372009 28 100.0 32 ............................ TAATGCAATTATCATGAATAATACTATGCACT 2372069 28 100.0 32 ............................ TCCTGATTATGTTTTATCCAAATGTAAATTAT 2372129 28 100.0 32 ............................ ATTACGACAACATAGAAGGCATAACCACAAGG 2372189 28 100.0 32 ............................ TGTGCAGCTATTGGAGGCTTAGGGGCTAAGTT 2372249 28 100.0 32 ............................ GCTGCTTATATTGGCGGCGACCTTTAAGATTT 2372309 28 100.0 32 ............................ TTACAAAGCCTGCTGTATGCGTCTTTTAATAA 2372369 28 100.0 32 ............................ TTGATGTTCGTGCGCCCTATTCGCAGTTATTA 2372429 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 54 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGGTGTCTCGTAAACAGCCTACAATGAGCCAATCAAAATTGAGGCGGTTAATTAAACGTAACACCTTGACAGAGGATGAAATCAGGCAATACAAGGCAAAGATGTTTTCCAAGGGTCTGGATAATCCATATATTGAACTTGTGAGCGTATCAAATGGGCAAAGACACCGACGCTATATTGAGTTTGGCGAATTGTTCAATGAGCCAAGTCCTGGCCTCTTTGATCAGTTCGGCCTTTCTAACAGTGCTACTGTTCCATGGTTTGATTAAATTTTAAAACAAGGTAAATTCCTTGAATTCGATAGGTTAAAGTAAGGAGATATAGTTTGGTCAAATGCTTCAATACTTGATTATTTCGATACTTCTAACGACCAATAAATTTAGTTCTTTAAAAATTTGTCTTAAAATCAATTGGTTATAAATTAGCTGAAAGATATTGGGTAAATCGATTTTTTTCAGCTAACTTTCTGTTGTAACTATTTTTTTAAGATTTATATTACA # Right flank : ATTCAGAAGATTTGCCTTCATCGAATTCTGGAAGTTGTCAAATTGATGCAAAATGAAGCGGAATTAACAAAACAGCTATACCGTTACGCAGCAAACCGAACTCAGTATGGCAAATTTATTCGTGAGCGAGAAGCTATAGATAAGGCCAATATATTTTTAAATCATGGCAATTACCTTGCCTATGGTTTAGCGGCAACAACGCTGTGGGTTCTTGGGATTCCTCACGGCTTTGCTGTTATGCACGGCAAGACACGTCGCGGTGCATTGGTATTTGATGTAGCGGATTTAATCAAGGACGCCCTTATTCTGCCTTGGGCATTTATCTGCGCCAAGGAAAATAGTAGCGAACAAGAGTTTCGCCAGCTAAGTTCACTGCCGCACAGGCAGCTTAGAAAAGTACCACGGCACAAACACCGCCTGAAAGTTGGTTCACTGCCGCACAGGCAGCTTAGAAATACTACGTCCTTAGCTCTTAAGTCTTTTGTGCGTTCACTGCCGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2372823-2373572 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016870.1 Legionella pneumophila subsp. pneumophila strain FFI103 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2372823 28 100.0 32 ............................ AGTACCACGGCACAAACACCGCCTGAAAGTTG 2372883 28 100.0 32 ............................ TACTACGTCCTTAGCTCTTAAGTCTTTTGTGC 2372943 28 100.0 32 ............................ TCTTGCGGCGCGTCTTTGTCTTCCATTAATTC 2373003 28 100.0 33 ............................ CAACAGACACGACAGGGTAGGGTTGCCCACAAA 2373064 28 100.0 32 ............................ GCCATCATGATTACTAAAGTCGATTGTGACCC 2373124 28 100.0 32 ............................ CAAAGTGTACGGAGATAGACCGCAAGACGACA 2373184 28 100.0 32 ............................ AATATAAAGCATCGGGAAAATGTAGACAAAAT 2373244 28 100.0 32 ............................ AAATGCACGGCGCAAAAGTCAGAAAACAGCCT 2373304 28 100.0 32 ............................ AGACAGAAATCCGGCTGGGCTAGAAATGATGA 2373364 28 100.0 32 ............................ TCTTGCCTGCTCTTAACTACAACTCCAGACCA 2373424 28 100.0 32 ............................ AAACAACCACACCTCCCTTTTTAGTTAATCTA 2373484 28 100.0 33 ............................ GATTCGATACATTTTTTAACTCGTCGCCCCAGT 2373545 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGGCAGCTTAGAAATTACAAAGCCTGCTGTATGCGTCTTTTAATAAGTTCACTGCCGCACAGGCAGCTTAGAAATTGATGTTCGTGCGCCCTATTCGCAGTTATTAGTTCACTGCCGCACAGGCAGCTTAGAAATTCAGAAGATTTGCCTTCATCGAATTCTGGAAGTTGTCAAATTGATGCAAAATGAAGCGGAATTAACAAAACAGCTATACCGTTACGCAGCAAACCGAACTCAGTATGGCAAATTTATTCGTGAGCGAGAAGCTATAGATAAGGCCAATATATTTTTAAATCATGGCAATTACCTTGCCTATGGTTTAGCGGCAACAACGCTGTGGGTTCTTGGGATTCCTCACGGCTTTGCTGTTATGCACGGCAAGACACGTCGCGGTGCATTGGTATTTGATGTAGCGGATTTAATCAAGGACGCCCTTATTCTGCCTTGGGCATTTATCTGCGCCAAGGAAAATAGTAGCGAACAAGAGTTTCGCCAGCTAA # Right flank : GTTATTATGTTAAAGGTATTGGCACGCTACGTAGCAAGGTCAGGCCTTGGTACGACCTTGTTTTGATTAGGAAAGTCTAATTATGACTATAATCTCCATTTCTCTTTATGGAGTATAGCAACCGTTAGTCAAATCTATACATAACCTAAACACATAAAAATAAACTCCCTAATTCCATGGAAATGAGTGTAATTGGATCGCAGTCAAAATAAATTGTGAAGTATGATTACTGAGAAAATTAAATTTAGTTGATGAGTATCTATTGGATCATGAGAATAGTCTAATGATGTGCGTTAATTATGCATATATGCTAAAAATTACTACCTGATAAGCTAGACAGTGTCGTCAAATTAACTTCCCCATAGTTCAATACACCTGATTTGTACTGCAGCAAGAAAAGAAGAGGTGTTTTTTGCATATCTTGTGGCAATCCCCTCCAACGTTTGAGATGGGGGAAGGCATTCTCCACCAGATGACGAAGTTTATAGATCGCTTTATCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //