Array 1 416802-414481 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQKO01000001.1 Neisseria bergeri strain M40553 M40553_CHA5855A70_cleaned_ctg_4320, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 416801 32 100.0 32 ................................ TACTTTTTCAGAATAACCGGGATAGCCGGTTG 416737 32 96.9 34 C............................... ACGAGATACTGTGCGAATACAGAAGAAGGCGGCA 416671 32 96.9 37 A............................... GAAACATCAGTGGCATGCCGAACTCAACGGTTCGTTC 416602 32 100.0 33 ................................ TGCCAAAACCAAATCGAAGCGTGGGAACGCGTC 416537 32 96.9 33 C............................... AGTACCTTTAGGGATTTGTTTTATTTCGCTCCC 416472 32 96.9 33 C............................... AGCAAAAACCCAAGCATTTATGCCTCGCTTTTA 416407 32 96.9 34 C............................... ATCGGCAAGCTCCTTGAACGTATCCAGCTCTTCG 416341 32 100.0 34 ................................ CGAATAGTTAAAGAAATGGTGTTTTCTTCACAAG 416275 32 96.9 33 C............................... AGCTCTAAGGCATGTGAAGATTTTTTGTACGAG 416210 32 100.0 34 ................................ TTAACCAACCTCTTAAAAAAACCGTTTCGCCCCA 416144 32 100.0 33 ................................ ATGGCTGGTGTAATGACTAGATATTCATGCAAG 416079 32 100.0 33 ................................ ACCAGTTGCTACACCTCAAGCAAAAAAGGTATC 416014 32 96.9 32 C............................... GCGCGATATATCCTGTATCTGTTTTTTTGCCA 415950 32 100.0 33 ................................ TTTGATATACTGGTTTCATTGTGAATCTAACTT 415885 32 96.9 33 T............................... GTCTATGATGACGACCGAACCGTTATTTTCGGG 415820 32 96.9 33 A............................... TTCGTAATATGTGCCTGTTGCTTCTGAACAGCA 415755 32 100.0 32 ................................ TATACAGCCTGCTATATATTCAAAAGTTCTTA 415691 32 96.9 33 C............................... CCGTCTTTGCCGTCCCTGCCGTTTGTGCGCCCC 415626 32 100.0 32 ................................ CAAAGGATGCTGAATGTGATCACGTCGTTCCG 415562 32 96.9 34 T............................... TCAAGCAGTTGCGCTTGGTGGATGTGCCGGGCGA 415496 32 100.0 34 ................................ TCAAGCAGTTGCGCTTGGTGGATGTGCCGGGCGA 415430 32 100.0 34 ................................ CGTCCTTATTACCCAGCCCCAATAATAGCTTGTA 415364 32 100.0 33 ................................ AGCATGAAGTCTTTGGGATTCGGGTCAGTTAAT 415299 32 96.9 34 A............................... TAAACCGAAGTGAAAGGAAAAACATCATGTCTCA 415233 32 96.9 33 A............................... TTTTAAATTTCATATCATCCTCCTACTTGAAAA 415168 32 96.9 34 A............................... CAACGATTGACCAGGCTATGGACTATTCTGTGTC 415102 32 96.9 34 C............................... ATTCAAAATGTTATCTTTGGATGACAGACACCGG 415036 32 96.9 33 A............................... AAATGGGCTTTATATGCGATTTCTTGAAAAAGA 414971 32 96.9 33 T............................... TGCTGCTGGGCGTTGTCGTTCCTCATGCTCAAG 414906 32 96.9 33 T............................... TGCTGCTGGGCGTTGTCGTTCCTCATGCTCAAG 414841 32 96.9 33 T............................... CCCGTTCCGACCTCGTGCCGAACAGCCCACAAG 414776 32 96.9 33 C............................... AGCCCATTACGTCAATAATTATTTTAAAATTAT 414711 32 96.9 36 T............................... CCTGTTGGGAATAGCATGTGCAATCTGTCTTCCCAC 414643 32 96.9 33 T............................... AAGGCAGAAATTGATTTTGATTTCGTCACCAAC 414578 32 96.9 34 T............................... AGTTACGGTTAAATACGCTTGCCATTTTCTACCA 414512 32 87.5 0 T.........TC......T............. | ========== ====== ====== ====== ================================ ===================================== ================== 36 32 97.7 33 GCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Left flank : GCATGGAGGGATAAGAAAATGCTGATGTTGATAACTTATGATATTTCGCTGGAAAATGCCGAAGGGCAGGCAAGGCTGCGGCGCGTAGCGAAACTGTGCCAAGACTACGGCGTGCGCGTGCAGTATTCCGTGTTCGAATGCGACATCTCACCCGACCAATGGGTAGTTTTAAAAGACAAACTTTTAAAAACCTACAACCCCGAAACAGACAGCCTGCGCTTTTACCACTTGGGCAGCAAATGGCGGCGCAAAGTGGAACATCACGGCGCAAAACCGACGGTCGATATATTCAAGGACACGCTGATTGTGTGAATCGCCAACCTGTTGTTCCCATAAAAATGCGGCAGGGTTGGCGAATTTGGATTGTTCTTTAACAATCAGGATATTGCAAATGTGGATATGGCGGATAAGGCTGTGCTATACTCATGCTTGTGCTTTTTTCGGGAGTTTGGCGAAGTCGGGGCTGCAAAGCCTGATGTAGTAAGGCTTTCGGAAGAGGC # Right flank : GGCGCGGACGACATCCGCTTCCTGCGCGAGCTGGGTTTGTAAACCCTTAAAGGACAATCCGATTTCCCTACGGCTTCAAACTCTGTCGGGGTCGAAGCAAAAATGCCGTCTGAACTTGGTTTCAGACGGCATTTTTTAATAAAAAAAGGCTATGTTTTAGTAATCTGTTGATTTCAATTCTTTGCAAGGGAAAAGACAATTATTTTCCGGTTAGGAATAAACCTATCCTGTTGAATACCTTAAAGCCAAGTACGCCTATCAACACTATATTAAAACACAGCCTAAAAAATAATTTATATTATATCCATATATAAGTATAATGACACTTATTATCAACTTATAAGTGAAGTAGAAATGCGTAAACTGAATTATTTCAGCATTGCCTTGCTGCCGTTGATACTGGCAGCCTGTGGCGGCAATTTCGGCGTGCAGCCTGTTGCCAAACCAACGCCGACCGCGCAAACCCCGTCAGATTCCAAACCTTCCAAACCTGAGGACGT # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //