Array 1 62823-61189 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTGF01000001.1 Moraxella catarrhalis strain CDPH_C53 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 62822 28 100.0 32 ............................ ATAAGGCCAATACCTGCACCGATGAGTGCCGC 62762 28 100.0 32 ............................ TTGCTCTAATGCACGGATTTGCCCATCTAATT 62702 28 100.0 32 ............................ GCATCATTGTAGAGGGGTACTAATATGCACTA 62642 28 100.0 33 ............................ TGATCAGCTTTCGTAGTGATTTGTTCAGACAGC 62581 28 100.0 32 ............................ TTAAGTCCCATTTGTCATCGAGCATCATTGAT 62521 28 100.0 33 ............................ CTTTATCATCGACACAGACAGTGATGATGATAT 62460 28 100.0 32 ............................ CAATACAATGACTTCACCATTTCCAGATAGAA 62400 28 100.0 33 ............................ AAGGCGTTCCAAAGCTATCAAAATTACCATTAT 62339 28 100.0 32 ............................ TTTTTAGTTTTTGCGTGGTCTGCCCCGTTTGA 62279 28 100.0 32 ............................ GCCATCGCTTATGAGCAGACAAGAAGCGACCC 62219 28 100.0 32 ............................ AAATGATGGCGAAAACTGGACAATCATTGATG 62159 28 100.0 32 ............................ TTAAAATCTACGCCATCCAAATGCTCAATGAA 62099 28 100.0 32 ............................ ACGCTCTAGCTTGATCTTATCAATGCGACTTT 62039 28 100.0 0 ............................ - Deletion [62012] 62011 20 71.4 32 --------.................... TGTCCAATCGCTTGTATTGCCTAGCTTATCCA 61959 28 100.0 32 ............................ GCTGATGTTGCTTTCAATCGTGCCAATTTTGC 61899 28 100.0 32 ............................ ACAGGGAGATTATCGCAAAAATACAGCCAAAT 61839 28 100.0 32 ............................ AATATAAGTTATCATCAACTGTGTGTAGCTTT 61779 28 100.0 32 ............................ TACTTTAAATAATTGATTGTTCATAGTTTTAA 61719 28 100.0 32 ............................ ATATTAGATGAAAAGCGATTGGCGGAGTTGGT 61659 28 85.7 0 .......................CTTC. - Deletion [61632] 61631 23 82.1 32 -----....................... GTGCTGAATGTGAAAGCATTGCATGGTCGGCT 61576 28 100.0 32 ............................ ATCTTTGCACATAGAGACCAAAACCTTATCAA 61516 28 100.0 32 ............................ AGTATTTGTATTGATTGATGGTGATTGAGTGC 61456 28 96.4 32 ...................A........ TCTCCAGTTGGCAACGAAAATCCATTTTTCTC 61396 28 100.0 32 ............................ ATGCCTGACACCACACCGCCTGACTGCACTTT 61336 28 96.4 32 ..........A................. TAGCACCGCCCAGCCGCCCACACACGCACATT 61276 28 100.0 32 ............................ AAGCGATTAATCCGCTCACCAATTGTTCTGTT 61216 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ ================================= ================== 29 28 97.5 30 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTAGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACTCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAAATTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //