Array 1 84859-83244 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIEK01000146.1 Escherichia coli strain 80-C117-A entry146, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 84858 29 100.0 32 ............................. CTCCGACTTACCGTAGTGATGGCGCGCTGCCA 84797 29 100.0 32 ............................. AATTTCTGGAAAAAAACAAATTCAAAAAATTG 84736 29 100.0 32 ............................. TGACTGCGGTTCAAAATCTCCGGCACACGTCC 84675 29 100.0 32 ............................. GCCGCGCCGCACTGGCGCTGGCACGGTATGCA 84614 29 100.0 32 ............................. CCCTCACGGGCTATTTGGTTAATCGAAAATTA 84553 29 100.0 32 ............................. CCAGCCCTTGTTAACGTCTTCGCCGTTCGGGT 84492 29 100.0 32 ............................. GTTATTTTTTCACTAATTTCGGTTAGAGGGAT 84431 29 100.0 32 ............................. GGGGATTCGCGTACCTGCGCGCCAGTTCCCCG 84370 29 100.0 32 ............................. ATCACTATCGTGATGCTGACGGCGCACAGCTC 84309 29 100.0 32 ............................. CCACCACCGCCCCGACACCACATATAGTAGCG 84248 29 100.0 32 ............................. GAAGTCATGAAGACTTCGACTATTTCTTGATA 84187 29 100.0 32 ............................. GAGAAAAATGCTACAAAAATGAGCTACGAAAC 84126 29 100.0 32 ............................. CCATAATCAAAAGCGGCCAGAACTGCCATTTC 84065 29 100.0 32 ............................. ACAAAACGCGATCAATACAGTTTTGTTTTGCA 84004 29 100.0 32 ............................. ATACCCCAGCGTTTCGTTATATGACGGAAGAT 83943 29 100.0 32 ............................. GGATTTGCATTAACGCGGCGTGAACATTATTT 83882 29 100.0 32 ............................. CTGCAATCACCAGCGGCGCGGCGTGGTTTGGT 83821 29 100.0 32 ............................. CGTCACCACGCGCGCTACAGGTAATGCAGCTC 83760 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 83699 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 83638 29 100.0 32 ............................. GTCTGTGATGGTCTGCTCGTGAGTCCGCGGCG 83577 29 100.0 32 ............................. TAAACACAAGAAAAGGGCGGCACGGAGCCGCC 83516 29 100.0 32 ............................. GATTTTTCGCGAACTATCCCGGCGTAATGCGG 83455 29 100.0 32 ............................. AAAATTCCATTTTATTACTGTCGGCAATTTCG 83394 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 83333 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 83272 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 27 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 100-1897 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIEK01000132.1 Escherichia coli strain 80-C117-A entry132, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 100 29 100.0 32 ............................. CCTCCCCGCTCACGCCAACGTTAAACGTTATC 161 29 100.0 32 ............................. CCTCCCCGCTCACGCCAACGTTAAACGTTATC 222 29 100.0 32 ............................. ATCCCCCGGTTATTGACCCCAAAACTGGTGAG 283 29 100.0 32 ............................. GAACGGCGGCTATACGGATTCGACAGGTCAGC 344 29 100.0 32 ............................. TAACCCGGATAACTGGCAGAGTGCGAATAAAC 405 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 466 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 527 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 588 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 649 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 710 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 771 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 832 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 893 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 954 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 1015 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 1076 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 1137 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 1198 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 1259 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 1320 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 1381 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 1442 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 1503 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 1564 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 1625 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 1686 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 1747 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 1808 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 1869 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGAG # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //