Array 1 62350-60400 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOXQ01000020.1 Vibrio cholerae strain MGL788 NODE_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 62349 28 100.0 32 ............................ CATCCCCGCTAGACCTGTTAATAACCCGCCCG 62289 28 100.0 32 ............................ GAGTGGATATAGTAGGGATGTGCACATAAATA 62229 28 100.0 32 ............................ ACGGCATACATCAGAACAAGCGCCGCTTGCTT 62169 28 100.0 32 ............................ AATTAGTGCACTCAGTGGCAATGGCCTACTAA 62109 28 100.0 32 ............................ TCACAAGCGAACGTCCACCACAACCATTTTAG 62049 28 100.0 32 ............................ ACATCAGGTGTGTGGATTACGGCGACACAAGT 61989 28 100.0 32 ............................ AGAAGATGTATTACTCACCACCCCTTGATAGT 61929 28 100.0 32 ............................ ACAAAAGGGAAGTGGATCCATATTCGTACATG 61869 28 100.0 32 ............................ TCAGCAACAGGTTCAGGCGGTGGTTTGGTGGC 61809 28 100.0 32 ............................ ATTAGAACAACAAGTAGAAACACTGCAATTTA 61749 28 100.0 33 ............................ CAAAAATCACAGGCGCCATTGACAAAATCATTA 61688 28 100.0 32 ............................ CTACAGCGATGAGGTGATTCATGCGGGCATTG 61628 28 100.0 32 ............................ TTACATACTTGGAATTTGGCTCGGTGACGGGA 61568 28 100.0 32 ............................ ATTCTTGCGCGCGGAATATTTGTCAACTGCAC 61508 28 100.0 32 ............................ ATACGGATTAGGTCACGCATCGACGGTCCGAT 61448 28 100.0 32 ............................ GCATTCGGGGTCACAGCACGCACAATACAAAT 61388 28 100.0 32 ............................ CTATACCGTAATGGAGCAAGGTGGGCGGGGTA 61328 28 100.0 32 ............................ TGAACGGATCAGCGCGATCGCTTGTTCTTCAA 61268 28 100.0 32 ............................ TTACCTGTTTGGCCGGTTTTAGGGTCAAAATA 61208 28 100.0 32 ............................ AAGCCGATCACAGCGGACTTGACGGTTTGAAT 61148 28 100.0 32 ............................ GTTTACAATGCGTTCACCTTCGATTAGTAAAT 61088 28 100.0 32 ............................ ACCTACTAATGGTATAATTTTTCGACTCATAA 61028 28 100.0 32 ............................ AGTTCGCAGAGCACCACCGACTGACCTCAGAA 60968 28 100.0 32 ............................ TTCCCCAATGCAACAAAGCCTGTTCATTATCT 60908 28 96.4 33 ........T................... ATATACGCGGGGAGACAAACGTGAAACCGTGCG 60847 28 100.0 32 ............................ GAACCACAATGCCGCGGCAATTCCATTGAGGA 60787 28 100.0 32 ............................ TTCCGCTTTGCCTTGCCTCCGCACATGGTCAC 60727 28 100.0 32 ............................ TGCTGATTATGAAATCGCCGTTGATATTTACG 60667 28 100.0 32 ............................ TGTATATTTGGCATCACCATAGCAGCGGTCAG 60607 28 100.0 32 ............................ GTATCGCTTACGTCGATAACGTCTGAGACTTC 60547 28 100.0 32 ............................ GATCAAATCGCATTAGCTAAGCGCGGCGTGTT 60487 28 100.0 32 ............................ CATAAATTCAAGTTGCCGCGCTTTGTCTGGTA 60427 28 89.3 0 ...........C.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 33 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGTAACTTACGTAAGCTTTGTACGCAAGCATGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAATCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCTCCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGTTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGCAAAGCACATCTCAAGATGGGGGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCTACTGTACCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTAACCCTTTATTTTTGATCTTTAAAAATACGCTTTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACAGCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATTG # Right flank : GAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGTATATTTATTAGGGTTTTCTTAAATGGTCTTTTCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGTATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAGAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGTC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //