Array 1 407845-408483 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAGHRP010000003.1 Shimia sp. R9_3 NODE_3_length_523503_cov_45.325600, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
    407845	    29	 100.0	    32	.............................	CGCGACGAACTCCCCCGCAATCTGCGCTATTA	
    407906	    29	 100.0	    32	.............................	TGGCCGTTTTGGGAGCAATTACAATGAGTTCC	
    407967	    29	 100.0	    32	.............................	GAGCCATGCGCGTTGGCAGCAGGCGTGTAAAC	
    408028	    29	 100.0	    32	.............................	GACCGTGTGTCCTACACCATTCCGCGCGCTTA	
    408089	    29	 100.0	    32	.............................	ATCAAAGCGTGGCCGTCGATGTGACCGGCAAC	
    408150	    29	 100.0	    32	.............................	ACGCACCAGCAGATCGCGGCACTTAGGAGGGA	
    408211	    29	 100.0	    32	.............................	GTGATAGAAACCTTGTAGTCAATTTTTGGTAA	
    408272	    29	 100.0	    32	.............................	GGGAAACCGTCGTTGCCGCCGGACGCGCCGCC	
    408333	    29	 100.0	    32	.............................	GGGATGAGGGGTCCGGCCACGGATGCGGATGC	
    408394	    29	  96.6	    32	.......................A.....	ATACCAGCCGTAGGCGCTAACTGGCTATGGCA	
    408455	    29	  79.3	     0	.C...........G...A.....A.GG..	|                               	
==========	======	======	======	=============================	================================	==================
        11	    29	  97.8	    32	GTGTTCCCCGCACACGCGGGGATGAACCG	                                	       

# Left flank :   GCAGGCGATCTGCCCAAACCCGATCCCGCCCCGGAAGGGCAGGCCCCGGCACTTCCAGAACCCAAGGCAGGTGGTGATGCTGGTCATCGTGGTTAGCAATGCCCCACCGCGCCTGCGCGGTCGGCTGGGGGTCTGGCTGCTTGAGATTCGAGCCGGTGTCTATGTGGGGCGCTACTCGGCGCGCACCCGCGAACGGATCTGGGAACAGCTGGAGGCAGGCATCGACGAAGGGGACGCCGTTATGGCCTGGGCTGCGCCCAATGATCAGGGCTACAGCTTCCGCACCGTTGGCCAGAACCGCCGCATGCCTGTTGAGTTCGACGGCATGACCTTGGTGCAATTCGCCGCCCCGAAAGGTGAAAATCCCGAAAACGGTTAATCCCGCAGGCGCCTGTTTAAAGGTGTTTAGGGCCGAGGGTTTCTCGGGTGTTTACAGCACAAAAAAGTTGGTAGATTTTTGACCGAGGGTGAAGTTTAACAATATCAATGACTTTCAGCCA
# Right flank :  GATCGCTCCGCCGGAGCAGACATATAGGTCGACATTGCCAAGTAGATAGCGTATGTTATTTCGCCCAATGTCATTCGGTTGTAGGTGACACGATCTGGACCTAGATGGCATTTACTGATCCATCTTCTAGAAAGTGTAGTCTTCAGAGCCACAACATCCCCACACTAGGGATTGTCTATTTCAGGCGATCACAAGCAATTCTAAGCTAGCGATGACAGATTGGGCGCATGAAATTCGAAGTGCATCGTGTGCTTGACTGGCCGCATGCCGCATAATCAAGCCAAACAAATGAACTGATCCTCTATCTCGGTTTGGTCTGTCACTAAGTCCGAAAGCTCTACCGCAGGAGTACTCTGAGTGGTACCTTATGTGGTATGAAATACTTGAAATTCAATTTAATTGATTGTTATCAGGGGTATGGTGTATTTGTTTTTCGGACACCTCCTCCGCCACTTGGGTGGTTTTCCCGCTCTAGCGCTGAAGTTTGCCTCCCATTCATG

# Questionable array : NO	 Score: 6.15
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCACACGCGGGGATGAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [5,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-12.70,-12.10] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-7] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.92,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//