Array 1 187-935 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMOA01000002.1 Pseudomonas sp. Leaf127 contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 187 28 100.0 32 ............................ ACCACGGCCTGGTGCAGCTGCTGGCTACGCAT 247 28 96.4 32 ......................T..... TGGGTGCGCGCCGCCCTCCGCTGAGCAGTGGT 307 28 100.0 32 ............................ TGCTCGAAGCGGCGCCAGGCCCTACATGCGCA 367 28 100.0 32 ............................ AGAACGAAAACCAAGGCACTGCGGCTATCCCG 427 28 100.0 32 ............................ AGCTCACAGCTTGGGCGAACGAAAACCGGGAA 487 28 100.0 32 ............................ TGTGAACGCAGCATGAAGTCCAGCATCTGGTC 547 28 100.0 33 ............................ GGCATGGAGCCGGATCAAGGAGAGAGCATGAGT 608 28 100.0 32 ............................ AGCAGTCGATCAGTCGATACCGCGCCAGGCGC 668 28 100.0 32 ............................ TGAACGGCAAGCAGCTCACCAACGCTGAAAAG 728 28 100.0 32 ............................ AATTGACGCGGCTTCCTACGAAGTACATAGCG 788 28 100.0 32 ............................ TCGATCAAGGTCAAGTACAGATCCTCGGCAAT 848 28 92.9 32 ..................C...T..... AGACTCTGTGCTTCTGGAGTGAATCGCCCCTT 908 28 78.6 0 T..G.......CA.G...T......... | ========== ====== ====== ====== ============================ ================================= ================== 13 28 97.5 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : GGTGAAGGTTAAGTCCGCAAACTCAACATTAGCCAAGAACCACGATGACCCTCCTCTTTCGCCCACAGGGCGCCTTCGGCTGGTTCAGTTACACCACTTCTCGGGACACGATCAAAAAAAAGGATGAAATGCTTGTTAGCGGGATATTTTTCTTTAGAAACGAGAGGTTATCCAGCAAAGTGTCTAC # Right flank : ATGCAAGACGGTCCCGGCGTGGTTGCCTGTGCTCGACACTATCTTGCAGGTAGCAAAAATCTTGGCGAGCTTCCAGGTGCAATCGATTTTCTTAAGCAGACAAATGCTCAAACAGAATCGTCGCCCCCACGATCATCAACACCACCCCACCGACAATCTCCGCCCGCTTGCCAACAACCGTCCCGAGCACCCGCCCCAGCATCACCCCGATCGTCACCATGATCATCGTGGCCAAACCAATAGCCGCTGCCGCTACCAGAATATTCACATCGACAAACGCAAGACCCACACCGACGGCCAGCGCATCGATACTCGTCGCAAAGGCCGTGACGGCCAGCACCAGAAACGAATGCTGGCGGGTCTTCTCTTCTTGTTCATCCTCGTCTTTCACGCCGTTGTAGATCATGTGCAGGCCCAGGGCGATCAGCAGTGTGAAGGCGATCCAGTGGTCCCAGTCGGCGACCCAGGCGGTGGCAGCCTGGCCGATTGCCCAGCCGACA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2195-1986 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMOA01000024.1 Pseudomonas sp. Leaf127 contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2194 28 100.0 32 ............................ GTGAATGGCGCCGCAATATCCACGCCGCTCTG 2134 28 100.0 32 ............................ AGGAGCTGGTGAATAACCGCCTCAAAAAGGGC 2074 28 96.4 33 ...............C............ ATGAAGTCGCAGCGAGCAGGGCCGCAAGCAAAA 2013 28 75.0 0 ..C........C.C........T..GGT | ========== ====== ====== ====== ============================ ================================= ================== 4 28 92.8 33 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : GGGGTTTGACGTCGTAACGCACCCCGGTGACCTTTACGCCCTGCGCGCGGCACGGCTCGCTTGAGCACAGAAACTCAAAGCGGGCGCGGGGTGGTTCCTGGGAGAAGTATTCACGCCGCGCAGCGACAATCGACAGCTCCTGCTGCAGTTCGACACAAAAGGCGCGGGTGATGGGCTTTGTGGGTTTCATACGATACATCCCTGATGCCGTGTGCGTTGACAGCTTACTGGTTCTCGATATGGGACAAGTGATTTCAAGAGATGATGCATTGAGAGCGAGGGGAGGATAGGCGTTTGATTACCGGTGCCTGTATCAGGCGTCTTGGGCCTCTGGAGTGAGTGGGTTGGTCAACGGCATTTTTGGCGGGTAAGACCCTCTTTTTGGGGTGAAAGCCTGGCCCATATAAATCAAAGGGTTAGGCGTGTGAAAGAAAAATGGTTAATTAGATGAAAAGGAGTATTTTTCTTTTAAAACGAGAGGTTGTCGAGCAAAGTGTCTA # Right flank : GTGCCGACCGGATGAAGGTGGCAGCGTATGAAGCAATATTCATACACCGCCCCATCCTTTACTGAATCACACCACATGCCGCACGATCGCCGCCACCACCCAAGGGTTTGGGGTGGTCCGAGTGGTTATCGCCGCCTGCATGAATCATCAGTGCGTGTCCCTTGATTTGCGAAAGCTCTTTAATGCGGGGTGCCAGCACCGGGTAGTCGGCCGTGCCGTCTGCGTTCACGTAGATTGCCGGCAAGTCGCCCAAGTGGCCGTCCTTGTCATAAGGTCCCAGATGCTTTCCGGTCTTCTCTGGATCGAAGTGACCGCCTGCTGCCAGCGCGGCAACTTTGGCGCCGTCTTTAGTGCCAGCATCGCAACTGCCATTTTCGTGCACGTGAAAGCCATGCACTCCAGGCGGCAGCCCGGTCAGTTTTGGCGTGAAAACCAAGCCATAAGCCGTTTCTTCGATATTGACGCTACCAATCGATTTCGGCGCTCCGTCGGCACTGACC # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //