Array 1 2904837-2903039 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043541.1 Escherichia coli strain 15RDA-Livestock feces-ECO087 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2904836 29 96.6 32 ............C................ CGGGTAAAGTCTCGGCTGAGCGCGTATTGATG 2904775 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 2904714 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 2904653 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 2904592 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 2904531 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 2904470 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 2904409 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 2904348 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 2904287 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 2904226 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 2904165 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 2904104 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 2904043 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 2903982 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 2903921 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 2903860 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 2903799 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 2903738 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 2903677 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 2903616 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 2903555 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 2903494 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 2903433 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 2903372 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 2903311 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 2903250 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 2903189 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 2903128 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 2903067 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 30 29 98.4 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2931480-2930536 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043541.1 Escherichia coli strain 15RDA-Livestock feces-ECO087 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2931479 29 100.0 32 ............................. AGATTTGCCAAATTACGGACCTGATGCTGGGT 2931418 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 2931357 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 2931296 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 2931235 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 2931174 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 2931113 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 2931052 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 2930991 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 2930930 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 2930869 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 2930808 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 2930747 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 2930686 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 2930625 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 2930564 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACATTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //