Array 1 20400-19110 **** Predicted by CRISPRDetect 2.4 *** >NZ_APTT01000122.1 Neisseria meningitidis 81858 gnm81858.contig.121, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 20399 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 20333 36 100.0 30 .................................... TCAGGGCTATCGGGGCTGACCGGTTTATTG 20267 36 100.0 30 .................................... GGCGGATGGCATACGGCGTGCCTTTTCGGT 20201 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG 20135 36 100.0 30 .................................... CACCCTGATATTCCGCAACTCGATATACTG 20069 36 100.0 30 .................................... TTGGGAGGTGGAAAACCGAATCCTGCACGA 20003 36 100.0 30 .................................... AAGCAAATCATTTTCATAGTCAGCAGCTTC 19937 36 97.2 30 ......................T............. ACGTGAGTTTGTCTATGAGTTCGACGGCGT 19871 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 19805 36 100.0 30 .................................... TCAGCCTCAAATACATCCGCCAAATCGTTG 19739 36 100.0 30 .................................... CTTTCACTTCAGTAATGGCTTCGGCATATA 19673 36 100.0 30 .................................... GTGGGAGTTCGTCTATGAATTCGATGGCGT 19607 36 100.0 30 .................................... TAAATTTTTGATTTTGATTTTTTCTGTACG 19541 36 100.0 30 .................................... CTTCCGCACTTCCAGGGGTTAAATCGGGAC 19475 36 100.0 30 .................................... ACGCTTACCATCAACACGAAAATCGGTAAC 19409 36 100.0 30 .................................... ATCATGACATCCTCAGATTTAGTATTCAGA 19343 36 100.0 30 .................................... ATTATTTTTGATTTTGATTTTTTTCGTACA 19277 36 100.0 30 .................................... TTTTCGTTTCAACGACGGCAATGCCGAAGT 19211 36 100.0 30 .................................... CTCCGCCGACAAATATGATTCCGGCTGCGG 19145 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.6 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGATATTGTGCTAGAAGAAACAGAAAACGAGCAGAACAATGATTTCAGGCTGCCTGAAAATTTAGAACACTTTGATATTCAAATAGAAAATGTTTCTTTTCGCTATGCTGAAAATGAACCATACATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //