Array 1 324359-322739 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031332.1 Neisseria meningitidis strain M22814 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 324358 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 324292 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 324226 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 324160 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 324094 36 100.0 30 .................................... ACAAAGCCGCAAATCGTCCGCCGCGTATCA 324028 36 100.0 30 .................................... TTGCCGGATGAAGAGGTGGCGTTTGTTGCC 323962 36 100.0 30 .................................... TCAATGATAAAACTAAAGTTTAAACAGAAC 323896 36 100.0 30 .................................... ACTCCCTGTTTATCGGTTTTTCAGCTTAAA 323830 36 100.0 30 .................................... GTCAAGCATACTAAACGATTAATAGCTTAG 323764 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 323698 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 323632 36 100.0 30 .................................... TCATAATTGTATAGGTAAATGTCATCAACA 323566 36 100.0 30 .................................... CTGATGAGTTCTCTACGCATGGGACGTAGG 323500 36 100.0 30 .................................... TGAAGTTGCGCCGATTGCACCAACTGATGC 323434 36 100.0 30 .................................... ATCCGTTTGAGGCTAACAAGCCAGCCACTA 323368 36 100.0 30 .................................... AAATTCGAGCAAAGATAGAAGCAACTTGTT 323302 36 100.0 30 .................................... TGAGTTGTAGTTGTAGCTAGCATCAATAGA 323236 36 100.0 30 .................................... AAATGACGATGCGGAACGATTCAGGCAGAG 323170 36 100.0 30 .................................... GTGTGCCTCACTGTGCGCATTAAGTTGGTC 323104 36 100.0 30 .................................... AATGACGAGGCTTTGGATTGCGAGGATTTA 323038 36 100.0 30 .................................... TTGAGAGCAATATTTGTTCTCTCAGCATCG 322972 36 100.0 30 .................................... GCATTCTCCAACACTCGCGATACGGTGTTC 322906 36 100.0 30 .................................... TCATCAGACCTTTACTGTTCAGACGAGACA 322840 36 100.0 30 .................................... CAGACGCGGCATCAAATGGGGCATCATCAC 322774 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAGCGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGCCGGAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCAGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //